Guide to the Human Genome
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Name: LOC100291357 Sequence: fasta or formatted (203aa) NCBI GI: 239749744
Description:

PREDICTED: hypothetical protein XP_002347155

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         25           3
 C cysteine            2.0          4           1
 D aspartate           2.0          4           1
 E glutamate           4.4          9           1
 F phenylalanine       3.0          6           2
 G glycine             8.4         17           1
 H histidine           2.0          4           1
 I isoleucine          1.5          3           1
 K lysine              2.5          5           1
 L leucine             6.4         13           1
 M methionine          3.0          6           1
 N asparagine          1.0          2           1
 P proline             9.9         20           2
 Q glutamine           6.9         14           3
 R arginine            9.9         20           2
 S serine              9.4         19           2
 T threonine           8.9         18           1
 V valine              3.9          8           1
 W tryptophan          3.0          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347155 
LOC100292320          1.000   PREDICTED: hypothetical protein 
LOC100287543          1.000   PREDICTED: hypothetical protein XP_002343003 
ASXL2                 0.043   additional sex combs like 2 
EP400                 0.035   E1A binding protein p400 
LRRN4                 0.033   leucine rich repeat neuronal 4 
MLL4                  0.033   myeloid/lymphoid or mixed-lineage leukemia 4 
C9orf79               0.033   chromosome 9 open reading frame 79 
LOC100133915          0.030   PREDICTED: hypothetical protein 
LOC728965             0.030   PREDICTED: hypothetical protein 
LOC100294010          0.028   PREDICTED: hypothetical protein 
LOC100291514          0.028   PREDICTED: hypothetical protein XP_002347163 
LOC100289311          0.028   PREDICTED: hypothetical protein XP_002343026 
KAT2A                 0.028   general control of amino acid synthesis 5-like 2 [H...
MCTP1                 0.028   multiple C2 domains, transmembrane 1 isoform L [Hom...
PACS1                 0.028   phosphofurin acidic cluster sorting protein 1 
CHD6                  0.025   chromodomain helicase DNA binding protein 6 
SYNPO                 0.025   synaptopodin isoform A 
DLGAP3                0.025   discs, large (Drosophila) homolog-associated protei...
SYN1                  0.025   synapsin I isoform Ia 
SYN1                  0.025   synapsin I isoform Ib 
GJD4                  0.025   connexin40.1 
LOC100287063          0.023   PREDICTED: hypothetical protein 
LOC100287063          0.023   PREDICTED: hypothetical protein XP_002342368 
SGIP1                 0.023   SH3-domain GRB2-like (endophilin) interacting prote...
LOC100132848          0.023   PREDICTED: hypothetical protein 
CBX2                  0.023   chromobox homolog 2 isoform 1 
TRIO                  0.023   triple functional domain (PTPRF interacting) 
SRRM2                 0.023   splicing coactivator subunit SRm300 
LOC100288686          0.020   PREDICTED: hypothetical protein XP_002342615 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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