Guide to the Human Genome
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Name: LOC728965 Sequence: fasta or formatted (236aa) NCBI GI: 239751337
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         20           3
 C cysteine            2.5          6           1
 D aspartate           1.7          4           1
 E glutamate           6.4         15           2
 F phenylalanine       1.3          3           1
 G glycine            10.6         25           2
 H histidine           1.7          4           1
 I isoleucine          1.3          3           1
 K lysine              4.7         11           1
 L leucine            10.6         25           2
 M methionine          0.4          1           1
 N asparagine          2.1          5           1
 P proline            10.2         24           4
 Q glutamine           3.8          9           1
 R arginine           12.3         29           2
 S serine              9.3         22           2
 T threonine           4.2         10           2
 V valine              5.5         13           2
 W tryptophan          1.7          4           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128392          0.033   PREDICTED: hypothetical protein 
LOC100128392          0.033   PREDICTED: hypothetical protein 
LOC100128392          0.033   PREDICTED: hypothetical protein 
SASH1                 0.030   SAM and SH3 domain containing 1 
LOC100292378          0.026   PREDICTED: hypothetical protein 
LOC100292320          0.026   PREDICTED: hypothetical protein 
LOC100291357          0.026   PREDICTED: hypothetical protein XP_002347155 
LOC100287543          0.026   PREDICTED: hypothetical protein XP_002343003 
SAMD1                 0.026   sterile alpha motif domain containing 1 
LOC100128398          0.024   PREDICTED: hypothetical protein 
LOC100128398          0.024   PREDICTED: hypothetical protein 
LOC731282             0.024   PREDICTED: hypothetical protein 
LOC100128398          0.024   PREDICTED: hypothetical protein 
LOC100131098          0.022   PREDICTED: hypothetical protein 
LOC100131098          0.022   PREDICTED: hypothetical protein 
LOC100287104          0.022   PREDICTED: hypothetical protein XP_002343630 
LOC100292723          0.022   PREDICTED: hypothetical protein 
LOC100287063          0.022   PREDICTED: hypothetical protein 
SRRM2                 0.022   splicing coactivator subunit SRm300 
EMID2                 0.022   EMI domain containing 2 
GGN                   0.022   gametogenetin 
ANKRD36               0.022   PREDICTED: ankyrin repeat domain 36 
C1QL2                 0.020   complement component 1, q subcomponent-like 2 [Homo...
COL1A2                0.020   alpha 2 type I collagen 
RIMBP3B               0.020   RIMS binding protein 3B 
RIMBP3C               0.020   RIMS binding protein 3C 
LOC100292934          0.020   PREDICTED: hypothetical protein 
LOC729370             0.020   PREDICTED: hypothetical protein 
RIMBP3                0.020   DKFZP434H0735 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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