Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100132848 Sequence: fasta or formatted (141aa) NCBI GI: 169167405
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {45aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         18           2
 C cysteine            0.7          1           1
 D aspartate           2.8          4           1
 E glutamate           4.3          6           2
 F phenylalanine       0.0          0           0
 G glycine            13.5         19           2
 H histidine           0.7          1           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             6.4          9           1
 M methionine          0.7          1           1
 N asparagine          0.7          1           1
 P proline            13.5         19           2
 Q glutamine           5.0          7           2
 R arginine           17.7         25           2
 S serine              9.9         14           3
 T threonine           5.7          8           1
 V valine              3.5          5           1
 W tryptophan          1.4          2           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132848          0.200   PREDICTED: hypothetical protein 
LOC100292934          0.064   PREDICTED: hypothetical protein 
LOC100289408          0.064   PREDICTED: hypothetical protein 
LOC100290359          0.064   PREDICTED: hypothetical protein XP_002346414 
LOC100289408          0.064   PREDICTED: hypothetical protein XP_002344217 
LOC100287202          0.064   PREDICTED: hypothetical protein XP_002342114 
LOC100291551          0.064   PREDICTED: hypothetical protein XP_002346445 
LOC100293319          0.064   PREDICTED: hypothetical protein 
LOC100292589          0.053   PREDICTED: hypothetical protein 
LOC100291533          0.053   PREDICTED: hypothetical protein XP_002347080 
LOC100290121          0.053   PREDICTED: hypothetical protein XP_002346879 
LOC100288002          0.053   PREDICTED: hypothetical protein XP_002342946 
LOC100289406          0.053   PREDICTED: hypothetical protein XP_002342721 
FAM171A2              0.049   family with sequence similarity 171, member A2 [Hom...
DCAF10                0.049   WD repeat domain 32 
FLJ22184              0.049   PREDICTED: hypothetical protein FLJ22184 
LOC100288606          0.049   PREDICTED: hypothetical protein XP_002342652 
LOC100127891          0.045   PREDICTED: similar to hCG2042508 
LOC100290372          0.045   PREDICTED: hypothetical protein XP_002346788 
LOC100127891          0.045   PREDICTED: similar to hCG2042508 
LOC100127891          0.045   PREDICTED: similar to hCG2042508 
BBC3                  0.045   BCL2 binding component 3 isoform 1 
ISM2                  0.045   isthmin 2 homolog isoform 3 
ISM2                  0.045   isthmin 2 homolog isoform 1 
OBSCN                 0.042   obscurin, cytoskeletal calmodulin and titin-interac...
LOC100290691          0.042   PREDICTED: hypothetical protein XP_002347934 
LOC100131102          0.042   PREDICTED: hypothetical protein 
LOC100288156          0.042   PREDICTED: hypothetical protein XP_002344202 
LOC100131102          0.042   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press