Guide to the Human Genome
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Name: LOC100288686 Sequence: fasta or formatted (159aa) NCBI GI: 239742740
Description:

PREDICTED: hypothetical protein XP_002342615

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.4         26           4
 C cysteine            0.0          0           0
 D aspartate           0.6          1           1
 E glutamate           1.9          3           2
 F phenylalanine       0.6          1           1
 G glycine             8.2         13           1
 H histidine           2.5          4           1
 I isoleucine          0.6          1           1
 K lysine              1.9          3           1
 L leucine             9.4         15           2
 M methionine          1.3          2           1
 N asparagine          0.0          0           0
 P proline            17.0         27           3
 Q glutamine           3.8          6           1
 R arginine           12.6         20           2
 S serine              9.4         15           2
 T threonine           6.3         10           1
 V valine              7.5         12           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342615 
LOC100292536          0.607   PREDICTED: similar to zinc finger protein 607 [Homo...
LOC100291157          0.607   PREDICTED: hypothetical protein XP_002348259 
LOC100287475          0.607   PREDICTED: hypothetical protein XP_002342249 
TAF4                  0.079   TBP-associated factor 4 
FLJ22184              0.069   PREDICTED: hypothetical protein FLJ22184 
SMARCC1               0.069   SWI/SNF-related matrix-associated actin-dependent r...
RANBP9                0.066   RAN binding protein 9 
BAT2D1                0.066   HBxAg transactivated protein 2 
FMN2                  0.062   formin 2 
SALL3                 0.062   sal-like 3 
SFPQ                  0.059   splicing factor proline/glutamine rich (polypyrimidin...
WNK2                  0.055   WNK lysine deficient protein kinase 2 
C6orf132              0.055   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.055   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.055   PREDICTED: hypothetical protein LOC647024 
FLJ22184              0.052   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.052   PREDICTED: hypothetical protein LOC80164 
LOC100289242          0.052   PREDICTED: hypothetical protein XP_002342243 
COL27A1               0.052   collagen, type XXVII, alpha 1 
MICAL3                0.052   microtubule associated monoxygenase, calponin and L...
WASL                  0.052   Wiskott-Aldrich syndrome gene-like protein 
LOC645602             0.052   PREDICTED: hypothetical protein 
LOC645602             0.052   PREDICTED: hypothetical protein 
LOC645602             0.052   PREDICTED: hypothetical protein 
ZC3H4                 0.052   zinc finger CCCH-type containing 4 
IRAK1                 0.052   interleukin-1 receptor-associated kinase 1 isoform 3...
IRAK1                 0.052   interleukin-1 receptor-associated kinase 1 isoform 2...
IRAK1                 0.052   interleukin-1 receptor-associated kinase 1 isoform 1...
LOC100288963          0.052   PREDICTED: hypothetical protein XP_002342546 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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