Guide to the Human Genome
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Name: DENND3 Sequence: fasta or formatted (1198aa) NCBI GI: 50345870
Description:

DENN/MADD domain containing 3

Referenced in:

Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         72           2
 C cysteine            2.8         34           2
 D aspartate           5.3         64           2
 E glutamate           6.5         78           3
 F phenylalanine       4.0         48           2
 G glycine             4.6         55           2
 H histidine           3.6         43           2
 I isoleucine          4.0         48           2
 K lysine              6.3         75           2
 L leucine            11.8        141           3
 M methionine          3.2         38           1
 N asparagine          3.1         37           1
 P proline             5.7         68           3
 Q glutamine           4.5         54           2
 R arginine            4.9         59           2
 S serine              6.9         83           3
 T threonine           5.3         63           4
 V valine              7.5         90           2
 W tryptophan          1.5         18           1
 Y tyrosine            2.5         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DENN/MADD domain containing 3 
DENND5A               0.026   RAB6 interacting protein 1 
DENND4C               0.026   DENN/MADD domain containing 4C 
DENND4B               0.025   DENN/MADD domain containing 4B 
DENND5B               0.025   DENN/MADD domain containing 5B 
SBF2                  0.025   SET binding factor 2 
ST5                   0.022   suppression of tumorigenicity 5 isoform 1 
ST5                   0.022   suppression of tumorigenicity 5 isoform 1 
ST5                   0.022   suppression of tumorigenicity 5 isoform 2 
DENND1A               0.022   DENN/MADD domain containing 1A isoform 2 
DENND1A               0.022   DENN/MADD domain containing 1A isoform 1 
DENND4A               0.021   DENN/MADD domain containing 4A isoform 1 
DENND4A               0.021   DENN/MADD domain containing 4A isoform 2 
DENND1B               0.020   DENN/MADD domain containing 1B isoform 1 
MADD                  0.019   MAP-kinase activating death domain-containing prote...
MADD                  0.019   MAP-kinase activating death domain-containing prote...
MADD                  0.019   MAP-kinase activating death domain-containing prote...
MADD                  0.019   MAP-kinase activating death domain-containing protei...
MADD                  0.019   MAP-kinase activating death domain-containing prote...
MADD                  0.019   MAP-kinase activating death domain-containing prote...
MADD                  0.019   MAP-kinase activating death domain-containing prote...
MADD                  0.019   MAP-kinase activating death domain-containing prote...
MADD                  0.019   MAP-kinase activating death domain-containing prote...
MADD                  0.019   MAP-kinase activating death domain-containing prote...
DENND1B               0.019   DENN/MADD domain containing 1B isoform 2 
DENND2C               0.019   DENN/MADD domain containing 2C 
DENND1C               0.019   DENN/MADD domain containing 1C 
DENND2D               0.018   DENN/MADD domain containing 2D 
DENND2A               0.018   DENN/MADD domain containing 2A 
SBF1                  0.018   SET binding factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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