Guide to the Human Genome
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Name: ZP1 Sequence: fasta or formatted (638aa) NCBI GI: 66348148
Description:

zona pellucida glycoprotein 1

Referenced in:

Ovary, Uterus and Placenta

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         43           1
 C cysteine            3.3         21           2
 D aspartate           4.7         30           2
 E glutamate           3.1         20           1
 F phenylalanine       4.5         29           1
 G glycine             7.8         50           2
 H histidine           3.6         23           1
 I isoleucine          2.7         17           1
 K lysine              1.6         10           1
 L leucine            10.3         66           4
 M methionine          1.3          8           1
 N asparagine          2.5         16           2
 P proline             8.8         56           3
 Q glutamine           6.1         39           2
 R arginine            5.6         36           2
 S serine              8.2         52           2
 T threonine           7.5         48           2
 V valine              6.9         44           2
 W tryptophan          1.7         11           1
 Y tyrosine            3.0         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zona pellucida glycoprotein 1 
ZP4                   0.221   zona pellucida glycoprotein 4 preproprotein 
ZP2                   0.103   zona pellucida glycoprotein 2 preproprotein 
CUZD1                 0.024   CUB and zona pellucida-like domains 1 
TECTA                 0.021   tectorin alpha precursor 
LOC100291777          0.015   PREDICTED: similar to DMBT1 isoform 1 
LOC100291777          0.015   PREDICTED: similar to DMBT1 isoform 2 
UMOD                  0.015   uromodulin precursor 
UMOD                  0.015   uromodulin precursor 
DMBT1                 0.015   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.015   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.015   deleted in malignant brain tumors 1 isoform a precu...
ZP3                   0.015   zona pellucida glycoprotein 3 isoform 1 precursor [...
ZP3                   0.014   zona pellucida glycoprotein 3 isoform 2 
UMODL1                0.011   uromodulin-like 1 isoform 1 precursor 
UMODL1                0.011   uromodulin-like 1 isoform 2 precursor 
HYDIN                 0.010   hydrocephalus inducing isoform a 
LOC645781             0.010   PREDICTED: similar to mCG141871 
LOC645781             0.010   PREDICTED: similar to mCG141871 
LOC645781             0.010   PREDICTED: similar to mCG141871 
SALL3                 0.008   sal-like 3 
SHANK1                0.008   SH3 and multiple ankyrin repeat domains 1 
TECTB                 0.008   tectorin beta 
GP1BA                 0.007   platelet glycoprotein Ib alpha polypeptide precurso...
LOC100292488          0.007   PREDICTED: hypothetical protein 
LOC100289965          0.007   PREDICTED: hypothetical protein XP_002347141 
LOC100289007          0.007   PREDICTED: hypothetical protein XP_002342994 
BOD1L                 0.006   biorientation of chromosomes in cell division 1-like...
FLJ22184              0.006   PREDICTED: hypothetical protein FLJ22184 
LOC100133408          0.006   PREDICTED: similar to mucin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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