Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC645781 Sequence: fasta or formatted (358aa) NCBI GI: 113428456
Description:

PREDICTED: similar to mCG141871

Not currently referenced in the text

Other entries for this name:
alt prot {358aa} PREDICTED: similar to mCG141871
alt prot {306aa} PREDICTED: similar to mCG141871
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         51           3
 C cysteine            2.5          9           1
 D aspartate           2.5          9           2
 E glutamate           3.1         11           1
 F phenylalanine       5.0         18           1
 G glycine             9.5         34           2
 H histidine           2.0          7           1
 I isoleucine          1.1          4           1
 K lysine              1.1          4           1
 L leucine             9.8         35           2
 M methionine          0.6          2           1
 N asparagine          0.6          2           1
 P proline            16.5         59           6
 Q glutamine           2.2          8           1
 R arginine           10.6         38           4
 S serine              7.0         25           2
 T threonine           3.4         12           1
 V valine              7.3         26           2
 W tryptophan          1.1          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to mCG141871 
LOC645781             0.992   PREDICTED: similar to mCG141871 
LOC645781             0.841   PREDICTED: similar to mCG141871 
TGFBR3                0.097   transforming growth factor, beta receptor III 
TAF4                  0.042   TBP-associated factor 4 
MLL5                  0.041   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.041   myeloid/lymphoid or mixed-lineage leukemia 5 
RAPH1                 0.041   Ras association and pleckstrin homology domains 1 is...
FMN2                  0.038   formin 2 
SH3BP1                0.038   SH3-domain binding protein 1 
SAMD1                 0.036   sterile alpha motif domain containing 1 
FLJ22184              0.035   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.035   PREDICTED: hypothetical protein FLJ22184 
DIAPH1                0.034   diaphanous 1 isoform 2 
DIAPH1                0.034   diaphanous 1 isoform 1 
MLXIPL                0.034   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.034   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.034   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.034   Williams Beuren syndrome chromosome region 14 isofor...
ZFPM1                 0.034   zinc finger protein, multitype 1 
WASF1                 0.032   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.032   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.032   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.032   Wiskott-Aldrich syndrome protein family member 1 [Hom...
WIPF1                 0.032   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.032   WAS/WASL interacting protein family, member 1 
MYPOP                 0.032   Myb protein P42POP 
CPSF6                 0.032   cleavage and polyadenylation specific factor 6, 68 ...
NACA                  0.031   nascent polypeptide-associated complex alpha subuni...
GGN                   0.031   gametogenetin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press