Guide to the Human Genome
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Name: TFF3 Sequence: fasta or formatted (130aa) NCBI GI: 48928027
Description:

trefoil factor 3 precursor

Referenced in:

Stomach, Small Intestine, and Colon

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         14           2
 C cysteine            8.5         11           2
 D aspartate           2.3          3           1
 E glutamate           7.7         10           2
 F phenylalanine       2.3          3           1
 G glycine             4.6          6           1
 H histidine           0.8          1           1
 I isoleucine          1.5          2           1
 K lysine              3.8          5           1
 L leucine             8.5         11           2
 M methionine          3.1          4           1
 N asparagine          4.6          6           2
 P proline             7.7         10           1
 Q glutamine           4.6          6           1
 R arginine            6.9          9           2
 S serine              6.9          9           4
 T threonine           4.6          6           1
 V valine              7.7         10           2
 W tryptophan          1.5          2           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   trefoil factor 3 precursor 
TFF1                  0.187   trefoil factor 1 precursor 
TFF2                  0.147   trefoil factor 2 precursor 
GAA                   0.056   acid alpha-glucosidase preproprotein 
GAA                   0.056   acid alpha-glucosidase preproprotein 
GAA                   0.056   acid alpha-glucosidase preproprotein 
ZP4                   0.028   zona pellucida glycoprotein 4 preproprotein 
MGAM                  0.020   maltase-glucoamylase 
PLG                   0.020   plasminogen 
FAM136A               0.016   hypothetical protein LOC84908 
ZP1                   0.016   zona pellucida glycoprotein 1 
CLDN9                 0.012   claudin 9 
SLC16A7               0.012   solute carrier family 16, member 7 
ADAM9                 0.012   ADAM metallopeptidase domain 9 isoform 1 precursor [H...
TNC                   0.008   tenascin C precursor 
LPA                   0.008   lipoprotein Lp(a) precursor 
LOC100289195          0.008   PREDICTED: hypothetical protein XP_002342719 
ZNFX1                 0.008   zinc finger, NFX1-type containing 1 
LOC100293297          0.004   PREDICTED: similar to hCG1785205 
LOC100288352          0.004   PREDICTED: similar to hCG1785205 
LOC100288352          0.004   PREDICTED: hypothetical protein XP_002343764 
GABRG1                0.004   gamma-aminobutyric acid A receptor, gamma 1 precurso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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