Search of human proteins with 239749424

Search of human proteins with 239749424

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo
sapiens]
         (287 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo ...   571   e-163
gi|5803191 transcription elongation factor A 1 isoform 1 [Homo s...   571   e-163
gi|45439355 transcription elongation factor A 1 isoform 2 [Homo ...   520   e-148
gi|4507385 transcription elongation factor A protein 2 isoform a...   376   e-104
gi|38505156 transcription elongation factor A protein 2 isoform ...   363   e-101
gi|41350335 transcription elongation factor A (SII), 3 [Homo sap...   323   1e-88
gi|154146187 TFIIS central domain-containing protein 1 [Homo sap...   125   6e-29
gi|7662018 PHD finger protein 3 [Homo sapiens]                         74   2e-13
gi|28558977 mediator complex subunit 26 [Homo sapiens]                 56   4e-08
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]       52   6e-07
gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]       52   6e-07
gi|208022641 elongin A [Homo sapiens]                                  51   1e-06
gi|47271475 SPOC domain containing 1 [Homo sapiens]                    51   1e-06
gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo s...    49   4e-06
gi|23308505 hypothetical protein LOC127428 [Homo sapiens]              46   4e-05
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s...    41   0.001
gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]      36   0.034
gi|154816198 transcription elongation factor B polypeptide 3C-li...    35   0.058
gi|156938279 transcription elongation factor B polypeptide 3C [H...    35   0.058
gi|110349775 zinc finger protein 12 isoform b [Homo sapiens]           35   0.058
gi|66348108 zinc finger protein 12 isoform a [Homo sapiens]            35   0.058
gi|50658069 phosphodiesterase 4D interacting protein isoform 2 [...    35   0.076
gi|157311604 phosphodiesterase 4D interacting protein isoform 1 ...    35   0.076
gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens]             35   0.076
gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]             35   0.076
gi|50658071 phosphodiesterase 4D interacting protein isoform 5 [...    35   0.099
gi|45439357 elongin A2 [Homo sapiens]                                  35   0.099
gi|221136803 zinc finger protein 776 [Homo sapiens]                    34   0.13 
gi|23097321 zinc finger protein 383 [Homo sapiens]                     34   0.13 
gi|50428917 epithelial stromal interaction 1 isoform 1 [Homo sap...    34   0.13 

>gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo
           sapiens]
          Length = 287

 Score =  571 bits (1472), Expect = e-163
 Identities = 287/287 (100%), Positives = 287/287 (100%)

Query: 1   MVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK 60
           MVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK
Sbjct: 1   MVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK 60

Query: 61  KLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAP 120
           KLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAP
Sbjct: 61  KLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAP 120

Query: 121 STSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSR 180
           STSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSR
Sbjct: 121 STSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSR 180

Query: 181 ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTG 240
           ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTG
Sbjct: 181 ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTG 240

Query: 241 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 287
           GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC
Sbjct: 241 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 287


>gi|5803191 transcription elongation factor A 1 isoform 1 [Homo
           sapiens]
          Length = 301

 Score =  571 bits (1472), Expect = e-163
 Identities = 287/287 (100%), Positives = 287/287 (100%)

Query: 1   MVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK 60
           MVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK
Sbjct: 15  MVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK 74

Query: 61  KLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAP 120
           KLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAP
Sbjct: 75  KLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAP 134

Query: 121 STSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSR 180
           STSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSR
Sbjct: 135 STSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSR 194

Query: 181 ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTG 240
           ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTG
Sbjct: 195 ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTG 254

Query: 241 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 287
           GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC
Sbjct: 255 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301


>gi|45439355 transcription elongation factor A 1 isoform 2 [Homo
           sapiens]
          Length = 280

 Score =  520 bits (1340), Expect = e-148
 Identities = 266/287 (92%), Positives = 266/287 (92%), Gaps = 21/287 (7%)

Query: 1   MVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK 60
           MVQKKNA                     STRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK
Sbjct: 15  MVQKKNA---------------------STRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK 53

Query: 61  KLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAP 120
           KLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAP
Sbjct: 54  KLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAP 113

Query: 121 STSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSR 180
           STSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSR
Sbjct: 114 STSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSR 173

Query: 181 ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTG 240
           ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTG
Sbjct: 174 ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTG 233

Query: 241 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 287
           GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC
Sbjct: 234 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 280


>gi|4507385 transcription elongation factor A protein 2 isoform a
           [Homo sapiens]
          Length = 299

 Score =  376 bits (965), Expect = e-104
 Identities = 195/288 (67%), Positives = 230/288 (79%), Gaps = 7/288 (2%)

Query: 1   MVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK 60
           MV KK+A GA+DLL+ELK +P+TL LLQSTR+GMSVNA+RKQS+DEEV +LAKSLIKSWK
Sbjct: 18  MVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWK 77

Query: 61  KLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT-YVSSFPRA 119
           KLLD  S  K  +  +  P  TS     +R+ S +      R +   A  T  +++FP  
Sbjct: 78  KLLDA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPSTPRITTFPPV 131

Query: 120 PSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRS 179
           P T D+VR KCREML AAL+T  D++AIGAD E L +QIEE I++++ NTDMKYKNRVRS
Sbjct: 132 PVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRS 191

Query: 180 RISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKT 239
           RISNLKDAKNP+LR+NVLCG I P   A MT+EEMASDELKE+RK +TKEAIREHQMA+T
Sbjct: 192 RISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMART 251

Query: 240 GGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 287
           GGTQTDLFTCGKC+KKNCTYTQVQTRS+DEPMTTFVVCNECGNRWKFC
Sbjct: 252 GGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 299


>gi|38505156 transcription elongation factor A protein 2 isoform b
           [Homo sapiens]
          Length = 272

 Score =  363 bits (933), Expect = e-101
 Identities = 188/278 (67%), Positives = 222/278 (79%), Gaps = 7/278 (2%)

Query: 11  LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEK 70
           +DLL+ELK +P+TL LLQSTR+GMSVNA+RKQS+DEEV +LAKSLIKSWKKLLD  S  K
Sbjct: 1   MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDA-SDAK 59

Query: 71  DLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT-YVSSFPRAPSTSDSVRLK 129
             +  +  P  TS     +R+ S +      R +   A  T  +++FP  P T D+VR K
Sbjct: 60  ARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVRNK 114

Query: 130 CREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKN 189
           CREML AAL+T  D++AIGAD E L +QIEE I++++ NTDMKYKNRVRSRISNLKDAKN
Sbjct: 115 CREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKN 174

Query: 190 PNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTC 249
           P+LR+NVLCG I P   A MT+EEMASDELKE+RK +TKEAIREHQMA+TGGTQTDLFTC
Sbjct: 175 PDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTC 234

Query: 250 GKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 287
           GKC+KKNCTYTQVQTRS+DEPMTTFVVCNECGNRWKFC
Sbjct: 235 GKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 272


>gi|41350335 transcription elongation factor A (SII), 3 [Homo
           sapiens]
          Length = 348

 Score =  323 bits (827), Expect = 1e-88
 Identities = 175/332 (52%), Positives = 217/332 (65%), Gaps = 45/332 (13%)

Query: 1   MVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK 60
           MV +KN  GALDLLK+L +  M+++LLQ+TRIG++VN +RK  +D+EV SLAK LIK+WK
Sbjct: 17  MVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWK 76

Query: 61  KLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRK---DETNARDTY----- 112
           +LLD P   K    +++E A   +   E  +    +G    RK   D    RD+      
Sbjct: 77  RLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDPKTRRDSVDSKSS 136

Query: 113 VSSFPRAPS-------------------------------------TSDSVRLKCREMLA 135
            SS P+ PS                                     T DSVR KC EML+
Sbjct: 137 ASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEMLS 196

Query: 136 AALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKN 195
           AAL+  DDY   G + +++ S+IE+ IYQE+++TDMKY+NRVRSRISNLKD +NP LR+N
Sbjct: 197 AALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRN 256

Query: 196 VLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKK 255
           VL G I   L A+MTAEEMASDEL+E+R  +T+EAIREHQMAKTGGT TDLF C KCKKK
Sbjct: 257 VLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKK 316

Query: 256 NCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 287
           NCTY QVQTRSADEPMTTFV+CNECGNRWKFC
Sbjct: 317 NCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 348


>gi|154146187 TFIIS central domain-containing protein 1 [Homo
           sapiens]
          Length = 381

 Score =  125 bits (313), Expect = 6e-29
 Identities = 94/330 (28%), Positives = 152/330 (46%), Gaps = 49/330 (14%)

Query: 1   MVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK 60
           ++ K+N     + L EL+ I +T E LQ T +  +V  + K      +   AK L+  WK
Sbjct: 47  LMSKRNFEDLGNHLTELETIYVTKEHLQETDVVRAVYRVLKNCPSVALKKKAKCLLSKWK 106

Query: 61  KLL-----------------------DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSG 97
            +                         GPS +   +E      I S NS  +++ +  S 
Sbjct: 107 AVYKQTHSKARNSPKLFPVRGNKEENSGPSHDPSQNETL---GICSSNSLSSQDVAKLSE 163

Query: 98  NV--SNRKDETNARDTYV------SSFPRAPSTSDS---VRLKCREMLAAALRTGDDYIA 146
            +   NR  +   ++ +       S+  R+    D    +R KC E+L AAL +      
Sbjct: 164 MIVPENRAIQLKPKEEHFGDGDPESTGKRSSELLDPTTPMRTKCIELLYAALTSSSTDQP 223

Query: 147 IGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLF 206
                +    +IEE ++        KYK  +RS+++NLK+ +N +L++N+L G   P  F
Sbjct: 224 KADLWQNFAREIEEHVFTLYSKNIKKYKTCIRSKVANLKNPRNSHLQQNLLSGTTSPREF 283

Query: 207 ARMTAEEMASDELKEMRKNLTKEAIREHQMAKT-GGTQTDLFTCGKCKKKNCTYT----- 260
           A MT  EMA+ ELK++R + T+  I+EH + +   GTQT+   C +C+K NC  T     
Sbjct: 284 AEMTVMEMANKELKQLRASYTESCIQEHYLPQVIDGTQTNKIKCRRCEKYNCKVTVIDRG 343

Query: 261 ------QVQTRSADEPMTTFVVCNECGNRW 284
                  V+  + DE M T+V+CNECG +W
Sbjct: 344 TLFLPSWVRNSNPDEQMMTYVICNECGEQW 373


>gi|7662018 PHD finger protein 3 [Homo sapiens]
          Length = 2039

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 4/168 (2%)

Query: 67   STEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSV 126
            S EK     K+   +T      ++  +     +  +K E    + + ++    PS +D +
Sbjct: 869  SEEKSEKIPKESTTVTCTGEKASKPGTHEKQEMKKKKVEKGVLNVHPAASASKPS-ADQI 927

Query: 127  RLKCREMLAAAL--RTGDDYIAIGADEE-ELGSQIEEAIYQEIRNTDMKYKNRVRSRISN 183
            R   R  L   L  R  D  + +  ++  ++ ++IE+ ++   R+TD KYKN+ RS + N
Sbjct: 928  RQSVRHSLKDILMKRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFN 987

Query: 184  LKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAI 231
            LKD KN  L K VL G + PD   RM+ EE+AS EL   R+   +  I
Sbjct: 988  LKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTI 1035


>gi|28558977 mediator complex subunit 26 [Homo sapiens]
          Length = 600

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 22/60 (36%), Positives = 41/60 (68%)

Query: 5  KNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLD 64
          +N    L+++  L+  P+T E L+ TR+G  +N +RK++ +EE+   AK L++SW+KL++
Sbjct: 26 RNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIE 85


>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
          Length = 2240

 Score = 52.0 bits (123), Expect = 6e-07
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 2/114 (1%)

Query: 113 VSSFPRAPSTS--DSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTD 170
           +S+ P  P++    ++R   +E+L   +   DD I    +  ++   IE+ ++   + TD
Sbjct: 659 MSAAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTENEVGKIALHIEKEMFNLFQVTD 718

Query: 171 MKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRK 224
            +YK++ RS + NLKD KN  L   VL   I      R+  EE+ S EL   ++
Sbjct: 719 NRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKELSTWKE 772


>gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]
          Length = 1189

 Score = 52.0 bits (123), Expect = 6e-07
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 2/114 (1%)

Query: 113 VSSFPRAPSTS--DSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTD 170
           +S+ P  P++    ++R   +E+L   +   DD I    +  ++   IE+ ++   + TD
Sbjct: 659 MSAAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTENEVGKIALHIEKEMFNLFQVTD 718

Query: 171 MKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRK 224
            +YK++ RS + NLKD KN  L   VL   I      R+  EE+ S EL   ++
Sbjct: 719 NRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKELSTWKE 772


>gi|208022641 elongin A [Homo sapiens]
          Length = 798

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 13/123 (10%)

Query: 11  LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL------- 63
           L  LK+L  +P+T+++L  T +G +VN++RK    E V S A+ L+  WKKL+       
Sbjct: 53  LKYLKKLSTLPITVDILAETGVGKTVNSLRKH---EHVGSFARDLVAQWKKLVPVERNAE 109

Query: 64  -DGPSTEKDLDEKKKEPAITSQNSPEAREEST--SSGNVSNRKDETNARDTYVSSFPRAP 120
            D    EK    K+   A+  +   E   + T  ++G+ S   D    +   +S   R  
Sbjct: 110 PDEQDFEKSNSRKRPRDALQKEEEMEGDYQETWKATGSRSYSPDHRQKKHRKLSELERPH 169

Query: 121 STS 123
             S
Sbjct: 170 KVS 172


>gi|47271475 SPOC domain containing 1 [Homo sapiens]
          Length = 1216

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 7/160 (4%)

Query: 72  LDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVRLKCR 131
           L +   +PA +     EA E+S       + + +      Y+           +V    +
Sbjct: 565 LGDPSSDPACSQSGPMEAEEDSLPEQPEDSAQLQQEKPSLYIG-------VRGTVVRSMQ 617

Query: 132 EMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPN 191
           E+L   LR   D +      E + + IE A++   + T+ +YK + RS + NL+D +N +
Sbjct: 618 EVLWTRLRELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLD 677

Query: 192 LRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAI 231
           L   V+ G++ P    RM++ ++A  EL   R    K  +
Sbjct: 678 LFLKVVHGDVTPYDLVRMSSMQLAPQELARWRDQEEKRGL 717


>gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo
           sapiens]
          Length = 108

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)

Query: 248 TCGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 285
           +C KC+     + Q+QTRSADEPMTTF  C   +CG+RW+
Sbjct: 68  SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107


>gi|23308505 hypothetical protein LOC127428 [Homo sapiens]
          Length = 208

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 5/80 (6%)

Query: 4   KKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL 63
           K+N   AL  LK  K IP + E+L+STRIG +VN +RK S D EV SLA+ +   WK   
Sbjct: 56  KENLVEALQELK--KKIP-SREVLKSTRIGHTVNKMRKHS-DSEVASLAREVYTEWKTFT 111

Query: 64  DGPSTEKDLDEKKKEPAITS 83
           +  S    + E + +P   S
Sbjct: 112 EKHSNRPSI-EVRSDPKTES 130


>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
           sapiens]
          Length = 940

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 8/118 (6%)

Query: 13  LLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPST---- 68
           +L  L+++P+T++ L+       V  + K S DEE+  LA  L+  W  ++   S+    
Sbjct: 94  ILLTLQHLPLTVDHLKQNNTAKLVKQLSKSSEDEELRKLASVLVSDWMAVIRSQSSTQPA 153

Query: 69  EKD----LDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPST 122
           EKD     DE K    +  +   E + E+ +      ++++  +  T   S  +  ST
Sbjct: 154 EKDKKKRKDEGKSRTTLPERPLTEVKAETRAEEAPEKKREKPKSLRTTAPSHAKFRST 211


>gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]
          Length = 1844

 Score = 36.2 bits (82), Expect = 0.034
 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 8/139 (5%)

Query: 11   LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL----DGP 66
            +D + E KN       + ++    S+N + ++ ++ E   L KS  K  KK L    D  
Sbjct: 1519 VDTIPETKNFCGPSVTVDASAATKSMNCLARKHSERE-QPLKKSQKKKQKKTLVILDDSD 1577

Query: 67   STEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSV 126
              + DLD   +  +++S +S    EES +    S  +D+ N  +T   S P  P T  + 
Sbjct: 1578 LFDTDLDFPDQSISLSSVSSSSNAEESKTGDEESKARDKGNNPET-KKSIPCPPKT--TA 1634

Query: 127  RLKCREMLAAALRTGDDYI 145
              KC  +++  L +  +++
Sbjct: 1635 GKKCSALVSHCLNSLSEFM 1653


>gi|154816198 transcription elongation factor B polypeptide 3C-like
           [Homo sapiens]
          Length = 546

 Score = 35.4 bits (80), Expect = 0.058
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 25/123 (20%)

Query: 14  LKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL-----DGPST 68
           L++L  +PMT ++L  T I  +V  +RK    + V   A+ L   WKKL+      GP  
Sbjct: 31  LQKLSALPMTADILAETGIRKTVKRLRKH---QHVGDFARDLAARWKKLVLVDRNTGP-- 85

Query: 69  EKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVRL 128
               D +  E + + Q   EA +E   +                 ++ PR+PS S   R 
Sbjct: 86  ----DPQDPEESASRQRFGEALQEREKAWGFPEN-----------ATAPRSPSHSPEHRR 130

Query: 129 KCR 131
             R
Sbjct: 131 TAR 133


>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
           sapiens]
          Length = 546

 Score = 35.4 bits (80), Expect = 0.058
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 25/123 (20%)

Query: 14  LKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL-----DGPST 68
           L++L  +PMT ++L  T I  +V  +RK    + V   A+ L   WKKL+      GP  
Sbjct: 31  LQKLSALPMTADILAETGIRKTVKRLRKH---QHVGDFARDLAARWKKLVLVDRNTGP-- 85

Query: 69  EKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVRL 128
               D +  E + + Q   EA +E   +                 ++ PR+PS S   R 
Sbjct: 86  ----DPQDPEESASRQRFGEALQEREKAWGFPEN-----------ATAPRSPSHSPEHRR 130

Query: 129 KCR 131
             R
Sbjct: 131 TAR 133


>gi|110349775 zinc finger protein 12 isoform b [Homo sapiens]
          Length = 659

 Score = 35.4 bits (80), Expect = 0.058
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 228 KEAIREHQMAKTGGTQTDLFTCGKC-KKKNCTYTQVQTRSADEPMTTFVVCNECG 281
           K A+ +HQ   TG        CGKC  +K+   T ++T + ++P      CNECG
Sbjct: 355 KSALNDHQKIHTGVKLYKCSECGKCFCRKSTLTTHLRTHTGEKPYE----CNECG 405



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 230 AIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTR--SADEPMTTFVVCNECG 281
           A+  HQ   TG    + + CGKC  +  +Y  +  R  S ++P      CNECG
Sbjct: 553 ALNRHQRTHTGEKAYECYECGKCFSQ-MSYLTIHHRIHSGEKPFE----CNECG 601


>gi|66348108 zinc finger protein 12 isoform a [Homo sapiens]
          Length = 697

 Score = 35.4 bits (80), Expect = 0.058
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 228 KEAIREHQMAKTGGTQTDLFTCGKC-KKKNCTYTQVQTRSADEPMTTFVVCNECG 281
           K A+ +HQ   TG        CGKC  +K+   T ++T + ++P      CNECG
Sbjct: 393 KSALNDHQKIHTGVKLYKCSECGKCFCRKSTLTTHLRTHTGEKPYE----CNECG 443



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 230 AIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTR--SADEPMTTFVVCNECG 281
           A+  HQ   TG    + + CGKC  +  +Y  +  R  S ++P      CNECG
Sbjct: 591 ALNRHQRTHTGEKAYECYECGKCFSQ-MSYLTIHHRIHSGEKPFE----CNECG 639


>gi|50658069 phosphodiesterase 4D interacting protein isoform 2
           [Homo sapiens]
          Length = 969

 Score = 35.0 bits (79), Expect = 0.076
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 11/127 (8%)

Query: 11  LDLLKELKNI---PMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPS 67
           L LL+E  ++   PMT ELL+  ++      I +QS  +        L +  +K+    +
Sbjct: 200 LHLLEEPTSMEVQPMTEELLKQQKLNSHETTITQQSVSD------SHLAELQEKIQQTEA 253

Query: 68  TEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVR 127
           T K L EK  E +   + + E+ ++    G + N K+   +R+       +     +   
Sbjct: 254 TNKILQEKLNEMSYELKCAQESSQK--QDGTIQNLKETLKSRERETEELYQVIEGQNDTM 311

Query: 128 LKCREML 134
            K REML
Sbjct: 312 AKLREML 318


>gi|157311604 phosphodiesterase 4D interacting protein isoform 1
           [Homo sapiens]
          Length = 2346

 Score = 35.0 bits (79), Expect = 0.076
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 11/127 (8%)

Query: 11  LDLLKELKNI---PMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPS 67
           L LL+E  ++   PMT ELL+  ++      I +QS  +        L +  +K+    +
Sbjct: 200 LHLLEEPTSMEVQPMTEELLKQQKLNSHETTITQQSVSD------SHLAELQEKIQQTEA 253

Query: 68  TEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVR 127
           T K L EK  E +   + + E+ ++    G + N K+   +R+       +     +   
Sbjct: 254 TNKILQEKLNEMSYELKCAQESSQK--QDGTIQNLKETLKSRERETEELYQVIEGQNDTM 311

Query: 128 LKCREML 134
            K REML
Sbjct: 312 AKLREML 318


>gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens]
          Length = 888

 Score = 35.0 bits (79), Expect = 0.076
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 41  KQSTDEEVTSLAKSLIKSWKKLL----DGPSTEKDLDEKKKEPAITSQNSPEAREESTSS 96
           K S +EEV S  K LIK  KK      + P  +K+ +++K++     +   + +E++T S
Sbjct: 82  KNSAEEEVLSSEKQLIKMEKKEEEENGERPRKKKEKEKEKEKEKEKEKEREKEKEKATVS 141

Query: 97  GNVSNRKDETNARDTYVSSFPRAPSTSDSV 126
            NV+      +A  T  ++ P A +TS SV
Sbjct: 142 ENVA-----ASAAATTPATSPPAVNTSPSV 166


>gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]
          Length = 948

 Score = 35.0 bits (79), Expect = 0.076
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 41  KQSTDEEVTSLAKSLIKSWKKLL----DGPSTEKDLDEKKKEPAITSQNSPEAREESTSS 96
           K S +EEV S  K LIK  KK      + P  +K+ +++K++     +   + +E++T S
Sbjct: 82  KNSAEEEVLSSEKQLIKMEKKEEEENGERPRKKKEKEKEKEKEKEKEKEREKEKEKATVS 141

Query: 97  GNVSNRKDETNARDTYVSSFPRAPSTSDSV 126
            NV+      +A  T  ++ P A +TS SV
Sbjct: 142 ENVA-----ASAAATTPATSPPAVNTSPSV 166


>gi|50658071 phosphodiesterase 4D interacting protein isoform 5
           [Homo sapiens]
          Length = 1132

 Score = 34.7 bits (78), Expect = 0.099
 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 8/114 (7%)

Query: 21  PMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPA 80
           PMT ELL+  ++      I +QS  +        L +  +K+    +T K L EK  E +
Sbjct: 376 PMTEELLKQQKLNSHETTITQQSVSD------SHLAELQEKIQQTEATNKILQEKLNEMS 429

Query: 81  ITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVRLKCREML 134
              + + E+ ++    G + N K+   +R+       +     +    K REML
Sbjct: 430 YELKCAQESSQK--QDGTIQNLKETLKSRERETEELYQVIEGQNDTMAKLREML 481


>gi|45439357 elongin A2 [Homo sapiens]
          Length = 753

 Score = 34.7 bits (78), Expect = 0.099
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 15/118 (12%)

Query: 14  LKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEKDLD 73
           L++L  +PMT ++L  T I  +V  +RK    + V   A+ L   WKKL+      +   
Sbjct: 31  LQKLSALPMTADILAETGIRKTVKRLRKH---QHVGDFARDLAARWKKLVLVDRNTRPGP 87

Query: 74  EKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVRLKCR 131
           +  +E A   +     +++  + G   N            ++ PR+PS S   R   R
Sbjct: 88  QDPEESASRQRFGEALQDQEKAWGFPEN------------ATAPRSPSHSPEHRRTAR 133


>gi|221136803 zinc finger protein 776 [Homo sapiens]
          Length = 518

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 218 ELKEMRKNLT-KEAIREHQMAKTGGTQTDLFTCGKC-KKKNCTYTQVQTRSADEPMTTFV 275
           E KE RK+   K  + EHQ   TG    +   CGKC  +K       Q  S + P     
Sbjct: 405 ECKECRKSFRYKSHLTEHQRVHTGERPYECRECGKCFHQKGSLIQHQQIHSGERPHE--- 461

Query: 276 VCNECG 281
            C ECG
Sbjct: 462 -CGECG 466


>gi|23097321 zinc finger protein 383 [Homo sapiens]
          Length = 475

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 218 ELKEMRKNLTKEA-IREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVV 276
           + KE  K  T+ + +R+HQ    G    +   CGK   +N    Q Q    DE       
Sbjct: 367 DCKECGKAFTQSSQLRQHQRIHAGEKPFECLECGKAFTQNSQLFQHQRIHTDEKP---YE 423

Query: 277 CNECGNRWKFC 287
           CNECG  +  C
Sbjct: 424 CNECGKAFNKC 434


>gi|50428917 epithelial stromal interaction 1 isoform 1 [Homo
           sapiens]
          Length = 410

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 30/135 (22%)

Query: 155 GSQIEEAIYQ--EIRNTDMKYKNRVRSR--ISNLKDAKNPNLRKNVLCGNIPPDLFARMT 210
           GSQ E  + Q  +++    KYK +++    +   K+A+   L+K          + A   
Sbjct: 112 GSQSETEVRQKQQLQLMQSKYKQKLKREESVRIKKEAEEAELQK----------MKAIQR 161

Query: 211 AEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEP 270
            +    +E K +++NL +EA REHQ  KT                    +++ T S D  
Sbjct: 162 EKSNKLEEKKRLQENLRREAFREHQQYKTAE----------------FLSKLNTESPDRS 205

Query: 271 MTTFVVCNECGNRWK 285
                VC    + WK
Sbjct: 206 ACQSAVCGPQSSTWK 220


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.125    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,402,950
Number of Sequences: 37866
Number of extensions: 452945
Number of successful extensions: 2310
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 2165
Number of HSP's gapped (non-prelim): 290
length of query: 287
length of database: 18,247,518
effective HSP length: 101
effective length of query: 186
effective length of database: 14,423,052
effective search space: 2682687672
effective search space used: 2682687672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.