Guide to the Human Genome
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Name: ATAD5 Sequence: fasta or formatted (1844aa) NCBI GI: 26080431
Description:

ATPase family, AAA domain containing 5

Referenced in:

Replication Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         91           5
 C cysteine            2.0         36           2
 D aspartate           5.5        101           3
 E glutamate           7.8        143           3
 F phenylalanine       3.9         72           2
 G glycine             3.6         67           3
 H histidine           1.3         24           1
 I isoleucine          4.5         83           3
 K lysine             12.5        230           3
 L leucine             8.9        165           3
 M methionine          1.4         25           1
 N asparagine          6.0        111           3
 P proline             4.6         84           3
 Q glutamine           4.1         76           2
 R arginine            4.3         79           2
 S serine             10.9        201           4
 T threonine           6.6        122           2
 V valine              5.2         95           2
 W tryptophan          0.5         10           1
 Y tyrosine            1.6         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATPase family, AAA domain containing 5 
RFC1                  0.017   replication factor C large subunit 
BOD1L                 0.013   biorientation of chromosomes in cell division 1-like...
CENPE                 0.011   centromere protein E 
CHTF18                0.009   CTF18, chromosome transmission fidelity factor 18 ho...
MYH10                 0.009   myosin, heavy polypeptide 10, non-muscle 
RB1CC1                0.008   Rb1-inducible coiled coil protein 1 isoform 2 [Homo...
RB1CC1                0.008   Rb1-inducible coiled coil protein 1 isoform 1 [Homo...
ANKRD12               0.008   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.008   ankyrin repeat domain 12 isoform 1 
CEP290                0.008   centrosomal protein 290kDa 
PSIP1                 0.007   PC4 and SFRS1 interacting protein 1 isoform 2 [Homo...
PSIP1                 0.007   PC4 and SFRS1 interacting protein 1 isoform 2 
ATRX                  0.007   transcriptional regulator ATRX isoform 2 
ATRX                  0.007   transcriptional regulator ATRX isoform 1 
LUZP1                 0.007   leucine zipper protein 1 
LUZP1                 0.007   leucine zipper protein 1 
RAD17                 0.007   RAD17 homolog isoform 1 
RAD17                 0.007   RAD17 homolog isoform 1 
RAD17                 0.007   RAD17 homolog isoform 1 
RAD17                 0.007   RAD17 homolog isoform 1 
RAD17                 0.007   RAD17 homolog isoform 1 
RAD17                 0.007   RAD17 homolog isoform 2 
UACA                  0.007   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.007   uveal autoantigen with coiled-coil domains and ankyr...
EIF5B                 0.007   eukaryotic translation initiation factor 5B 
EEA1                  0.007   early endosome antigen 1, 162kD 
ANKRD11               0.007   ankyrin repeat domain 11 
FAM178A               0.006   hypothetical protein LOC55719 isoform 1 
FAM178A               0.006   hypothetical protein LOC55719 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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