Guide to the Human Genome
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Search of human proteins with 239749207

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239749207 PREDICTED: hypothetical protein [Homo sapiens]
         (369 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239749207 PREDICTED: hypothetical protein [Homo sapiens]           775   0.0  
gi|239508971 PREDICTED: hypothetical protein [Homo sapiens]           775   0.0  
gi|239754648 PREDICTED: hypothetical protein [Homo sapiens]           722   0.0  
gi|239743287 PREDICTED: hypothetical protein [Homo sapiens]           409   e-114
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    37   0.022
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    37   0.022
gi|46852388 cell-cycle and apoptosis regulatory protein 1 [Homo ...    37   0.037
gi|5174545 myocyte enhancer factor 2D [Homo sapiens]                   35   0.082
gi|13129078 alveolar soft part sarcoma chromosome region, candid...    35   0.082
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]            34   0.24 
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]            34   0.24 
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]            34   0.24 
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]     34   0.24 
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]     34   0.24 
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]                    33   0.31 
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]         33   0.41 
gi|11386161 alpha 2 type IX collagen [Homo sapiens]                    33   0.41 
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    33   0.41 
gi|194353946 homeobox D12 [Homo sapiens]                               32   0.70 
gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]            32   0.70 
gi|153945780 inter-alpha trypsin inhibitor heavy chain precursor...    32   0.70 
gi|153945711 inter-alpha trypsin inhibitor heavy chain precursor...    32   0.70 
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]     32   0.70 
gi|40807447 papillary renal cell carcinoma translocation-associa...    32   0.70 
gi|40807450 papillary renal cell carcinoma translocation-associa...    32   0.70 
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]         32   1.2  
gi|239757832 PREDICTED: hypothetical protein [Homo sapiens]            32   1.2  
gi|239752343 PREDICTED: hypothetical protein [Homo sapiens]            32   1.2  
gi|239746856 PREDICTED: hypothetical protein XP_002343859 [Homo ...    32   1.2  
gi|38373671 SEC24-related protein C [Homo sapiens]                     32   1.2  

>gi|239749207 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 369

 Score =  775 bits (2001), Expect = 0.0
 Identities = 369/369 (100%), Positives = 369/369 (100%)

Query: 1   MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
           MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA
Sbjct: 1   MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60

Query: 61  QPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVG 120
           QPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVG
Sbjct: 61  QPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVG 120

Query: 121 HPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQACRVLGMQ 180
           HPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQACRVLGMQ
Sbjct: 121 HPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQACRVLGMQ 180

Query: 181 PVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTHQH 240
           PVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTHQH
Sbjct: 181 PVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTHQH 240

Query: 241 LGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQLCV 300
           LGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQLCV
Sbjct: 241 LGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQLCV 300

Query: 301 IPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHRGG 360
           IPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHRGG
Sbjct: 301 IPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHRGG 360

Query: 361 SRALPKQRH 369
           SRALPKQRH
Sbjct: 361 SRALPKQRH 369


>gi|239508971 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 369

 Score =  775 bits (2001), Expect = 0.0
 Identities = 369/369 (100%), Positives = 369/369 (100%)

Query: 1   MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
           MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA
Sbjct: 1   MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60

Query: 61  QPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVG 120
           QPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVG
Sbjct: 61  QPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVG 120

Query: 121 HPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQACRVLGMQ 180
           HPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQACRVLGMQ
Sbjct: 121 HPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQACRVLGMQ 180

Query: 181 PVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTHQH 240
           PVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTHQH
Sbjct: 181 PVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTHQH 240

Query: 241 LGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQLCV 300
           LGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQLCV
Sbjct: 241 LGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQLCV 300

Query: 301 IPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHRGG 360
           IPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHRGG
Sbjct: 301 IPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHRGG 360

Query: 361 SRALPKQRH 369
           SRALPKQRH
Sbjct: 361 SRALPKQRH 369


>gi|239754648 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 377

 Score =  722 bits (1864), Expect = 0.0
 Identities = 352/381 (92%), Positives = 354/381 (92%), Gaps = 16/381 (4%)

Query: 1   MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
           MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA
Sbjct: 1   MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60

Query: 61  QPPPHLQRPQVQTNVLLSPRRLSGE------------PQRTRPLPPTTFSNVRVSRGVQG 108
           QPPPHLQRPQVQTNVLLSPRR+ G             P   R     T     +SRGVQG
Sbjct: 61  QPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQT----GISRGVQG 116

Query: 109 DPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQ 168
           DPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQ
Sbjct: 117 DPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQ 176

Query: 169 GLPQACRVLGMQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQK 228
           GLPQACRVLGMQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQK
Sbjct: 177 GLPQACRVLGMQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQK 236

Query: 229 IRALILHHTHQHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLR 288
           IRALILHHTHQHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLR
Sbjct: 237 IRALILHHTHQHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLR 296

Query: 289 WSCPKAGYQLCVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPA 348
           WSCPKAGYQLCVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPA
Sbjct: 297 WSCPKAGYQLCVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPA 356

Query: 349 GRGQQVHAHRGGSRALPKQRH 369
           GRGQQVHAHRGGSRALPKQRH
Sbjct: 357 GRGQQVHAHRGGSRALPKQRH 377


>gi|239743287 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 191

 Score =  409 bits (1052), Expect = e-114
 Identities = 191/191 (100%), Positives = 191/191 (100%)

Query: 179 MQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTH 238
           MQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTH
Sbjct: 1   MQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTH 60

Query: 239 QHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQL 298
           QHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQL
Sbjct: 61  QHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQL 120

Query: 299 CVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHR 358
           CVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHR
Sbjct: 121 CVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHR 180

Query: 359 GGSRALPKQRH 369
           GGSRALPKQRH
Sbjct: 181 GGSRALPKQRH 191


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 37.4 bits (85), Expect = 0.022
 Identities = 39/133 (29%), Positives = 50/133 (37%), Gaps = 12/133 (9%)

Query: 2   GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQ 61
           G   PSG +      G P   GE  +  A G   R P   G   + G    P   G    
Sbjct: 531 GERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGR-PGDAGPQGKVGPSGAPGEDGRPGP 589

Query: 62  PPPHLQRPQVQTNVLLSPRRLSGEPQRT--RPLPPTTFSNVRVSRGVQGDPKDELDLVAV 119
           P P   R Q        P+  +GEP +   + LP           G++G P  + +  A 
Sbjct: 590 PGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAP--------GLRGLPGKDGETGAA 641

Query: 120 GHPHPQGP-GERG 131
           G P P GP GERG
Sbjct: 642 GPPGPAGPAGERG 654



 Score = 32.3 bits (72), Expect = 0.70
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 14/88 (15%)

Query: 77  LSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVA-VGHPHPQGP-------- 127
           LSP    GE     P    T S     +G +G+P D  D+V   G P PQGP        
Sbjct: 76  LSPEIPFGECCPICPTDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRG 135

Query: 128 -----GERGSTVFKDVGVDPGTLGSQSP 150
                GE+G+   +    +PGT G+  P
Sbjct: 136 DRGDKGEKGAPGPRGRDGEPGTPGNPGP 163



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 46/166 (27%), Positives = 56/166 (33%), Gaps = 32/166 (19%)

Query: 8    GASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQPPPH-- 65
            G S  P   GAP A G+       G     P  TG A + G E  P     GA  PP   
Sbjct: 999  GPSGEPGKQGAPGASGDRGPPGPVGP----PGLTGPAGEPGREGSP-----GADGPPGRD 1049

Query: 66   ----LQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVGH 121
                ++  + +T  + +P    G P    P  PT     R   G QG         A G 
Sbjct: 1050 GAAGVKGDRGETGAVGAPGA-PGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI 1108

Query: 122  PHPQGP----------------GERGSTVFKDVGVDPGTLGSQSPS 151
              PQGP                G RG T  + +   PG  G Q  S
Sbjct: 1109 QGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGAS 1154



 Score = 29.3 bits (64), Expect = 5.9
 Identities = 41/159 (25%), Positives = 51/159 (32%), Gaps = 24/159 (15%)

Query: 2    GGATPSGASHFPPIGGAPVAVGEEAVFTAAG--AAARWPLHTGGAEQFGEEAVPEGAGLG 59
            G   P G S  P   G     G +    A G   A  +P   G A + G        G  
Sbjct: 861  GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP---GAAGRVGPPGSNGNPGPP 917

Query: 60   AQPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAV 119
              P P  +           P   +GEP    P  P          G +G+P D+    A 
Sbjct: 918  GPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPP---------GEKGEPGDDGPSGAE 968

Query: 120  GHPHPQG----------PGERGSTVFKDVGVDPGTLGSQ 148
            G P PQG          PG+RG   F  +    G  G Q
Sbjct: 969  GPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQ 1007


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 37.4 bits (85), Expect = 0.022
 Identities = 39/133 (29%), Positives = 50/133 (37%), Gaps = 12/133 (9%)

Query: 2   GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQ 61
           G   PSG +      G P   GE  +  A G   R P   G   + G    P   G    
Sbjct: 462 GERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGR-PGDAGPQGKVGPSGAPGEDGRPGP 520

Query: 62  PPPHLQRPQVQTNVLLSPRRLSGEPQRT--RPLPPTTFSNVRVSRGVQGDPKDELDLVAV 119
           P P   R Q        P+  +GEP +   + LP           G++G P  + +  A 
Sbjct: 521 PGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAP--------GLRGLPGKDGETGAA 572

Query: 120 GHPHPQGP-GERG 131
           G P P GP GERG
Sbjct: 573 GPPGPAGPAGERG 585



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 46/166 (27%), Positives = 56/166 (33%), Gaps = 32/166 (19%)

Query: 8    GASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQPPPH-- 65
            G S  P   GAP A G+       G     P  TG A + G E  P     GA  PP   
Sbjct: 930  GPSGEPGKQGAPGASGDRGPPGPVGP----PGLTGPAGEPGREGSP-----GADGPPGRD 980

Query: 66   ----LQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVGH 121
                ++  + +T  + +P    G P    P  PT     R   G QG         A G 
Sbjct: 981  GAAGVKGDRGETGAVGAPGA-PGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI 1039

Query: 122  PHPQGP----------------GERGSTVFKDVGVDPGTLGSQSPS 151
              PQGP                G RG T  + +   PG  G Q  S
Sbjct: 1040 QGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGAS 1085



 Score = 29.3 bits (64), Expect = 5.9
 Identities = 41/159 (25%), Positives = 51/159 (32%), Gaps = 24/159 (15%)

Query: 2   GGATPSGASHFPPIGGAPVAVGEEAVFTAAG--AAARWPLHTGGAEQFGEEAVPEGAGLG 59
           G   P G S  P   G     G +    A G   A  +P   G A + G        G  
Sbjct: 792 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP---GAAGRVGPPGSNGNPGPP 848

Query: 60  AQPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAV 119
             P P  +           P   +GEP    P  P          G +G+P D+    A 
Sbjct: 849 GPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPP---------GEKGEPGDDGPSGAE 899

Query: 120 GHPHPQG----------PGERGSTVFKDVGVDPGTLGSQ 148
           G P PQG          PG+RG   F  +    G  G Q
Sbjct: 900 GPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQ 938


>gi|46852388 cell-cycle and apoptosis regulatory protein 1 [Homo
           sapiens]
          Length = 1150

 Score = 36.6 bits (83), Expect = 0.037
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 58  LGAQPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPL-PPTTFSNVRVSRGVQ 107
           L  QP P LQ+PQ +  +L  P R+  +PQ  R L PP+ FS  R  RG Q
Sbjct: 261 LQTQPQPLLQQPQQKAGLLQPPVRIVSQPQPARRLDPPSRFSG-RNDRGDQ 310


>gi|5174545 myocyte enhancer factor 2D [Homo sapiens]
          Length = 521

 Score = 35.4 bits (80), Expect = 0.082
 Identities = 43/166 (25%), Positives = 58/166 (34%), Gaps = 24/166 (14%)

Query: 4   ATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQP- 62
           ATPS  S   P    P A   +   T+A  ++     + G    G     +      QP 
Sbjct: 315 ATPSLLSQGLPFSSMPTAYNTDYQLTSAELSSLPAFSSPGGLSLGNVTAWQQPQQPQQPQ 374

Query: 63  ---PPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELD--LV 117
              PP  Q PQ Q      P++    PQ+   L P + SN+     + G P   +   L 
Sbjct: 375 QPQPPQQQPPQPQQPQPQQPQQPQQPPQQQSHLVPVSLSNL-----IPGSPLPHVGAALT 429

Query: 118 AVGHPH------PQGPGERGS------TVFKDVGVDPGTLGSQSPS 151
              HPH      P  P    S       VF     +PG  G  SP+
Sbjct: 430 VTTHPHISIKSEPVSPSRERSPAPPPPAVFPAARPEPGD-GLSSPA 474


>gi|13129078 alveolar soft part sarcoma chromosome region, candidate
           1 [Homo sapiens]
          Length = 553

 Score = 35.4 bits (80), Expect = 0.082
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 12  FPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQPPPHLQRPQV 71
           + P+G  P ++G  A    A A+A  PL +G   + G+ + PE A        H Q  Q 
Sbjct: 175 YDPVGKTPGSLGSSASAGQAAASAPLPLESGELSR-GDLSRPEDADTSGPCCEHTQEKQS 233

Query: 72  QTNVLLSP--------RRLSGEPQRTRPL 92
                 +P        +RL G P  TRPL
Sbjct: 234 TRAPAAAPFVPFSGGGQRLGGPPGPTRPL 262


>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 42  GGAEQFGEEAVPEGAGLGAQPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVR 101
           G A Q     +P+     AQPPPH      +++  L P++  G   R  P  P +FS +R
Sbjct: 16  GVANQLSHRILPQDGIKRAQPPPHTPATGTRSSYRLLPQKGRGN-LRGAPTAPVSFSRIR 74


>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 42  GGAEQFGEEAVPEGAGLGAQPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVR 101
           G A Q     +P+     AQPPPH      +++  L P++  G   R  P  P +FS +R
Sbjct: 16  GVANQLSHRILPQDGIKRAQPPPHTPATGTRSSYRLLPQKGRGN-LRGAPTAPVSFSRIR 74


>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 42  GGAEQFGEEAVPEGAGLGAQPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVR 101
           G A Q     +P+     AQPPPH      +++  L P++  G   R  P  P +FS +R
Sbjct: 16  GVANQLSHRILPQDGIKRAQPPPHTPATGTRSSYRLLPQKGRGN-LRGAPTAPVSFSRIR 74


>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
          Length = 2285

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 58/225 (25%), Positives = 74/225 (32%), Gaps = 23/225 (10%)

Query: 3   GATPSGASHF--PPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
           GA P  A+    PP  G     G      AA AAA +    GG +  G  A+  G G G 
Sbjct: 133 GAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGL 192

Query: 61  QPPPHLQRPQVQTNVLLSPRRL--SGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVA 118
           +P      PQ  ++    P     S  P R+   PP     +   RG  G P       A
Sbjct: 193 EP---YAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRG--GTPGSGAAAAA 247

Query: 119 VGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQACRVLG 178
              P P       S+         G +G   PS  G G         + Q L       G
Sbjct: 248 GSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARG 307

Query: 179 MQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWG 223
                  Q +  G    Y G P    G   GPAD    + ++ WG
Sbjct: 308 ------YQGYPGG---DYSGGPQ-DGGAGKGPAD----MASQCWG 338


>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
          Length = 2068

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 58/225 (25%), Positives = 74/225 (32%), Gaps = 23/225 (10%)

Query: 3   GATPSGASHF--PPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
           GA P  A+    PP  G     G      AA AAA +    GG +  G  A+  G G G 
Sbjct: 133 GAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGL 192

Query: 61  QPPPHLQRPQVQTNVLLSPRRL--SGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVA 118
           +P      PQ  ++    P     S  P R+   PP     +   RG  G P       A
Sbjct: 193 EP---YAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRG--GTPGSGAAAAA 247

Query: 119 VGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQACRVLG 178
              P P       S+         G +G   PS  G G         + Q L       G
Sbjct: 248 GSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARG 307

Query: 179 MQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWG 223
                  Q +  G    Y G P    G   GPAD    + ++ WG
Sbjct: 308 ------YQGYPGG---DYSGGPQ-DGGAGKGPAD----MASQCWG 338


>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
          Length = 1489

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 43/162 (26%), Positives = 56/162 (34%), Gaps = 44/162 (27%)

Query: 2    GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQ 61
            G   P      P  GGAP A G   +   +G  A  P+ TG A   G      G+G+ A+
Sbjct: 1111 GTLEPGTERRAPETGGAPRAPGAGRLDLGSGGRA--PVGTGTAPGGGP-----GSGVDAK 1163

Query: 62   ------------PPPHLQRPQVQTNVLLSPRRLSGEPQRTRPL--------PPTTFSNVR 101
                        PPP    P+ Q      PRRL   P R RP          P + +   
Sbjct: 1164 AGWVDNTRPQPPPPPLPPPPEAQ------PRRLEPAPPRARPEVAPEGEPGAPDSRAGGD 1217

Query: 102  VSRGVQGDPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPG 143
             +    GDP           P P+  G     +F D+G   G
Sbjct: 1218 TALSGDGDP-----------PKPERKGPEMPRLFLDLGPPQG 1248


>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
          Length = 1682

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 6   PSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTG---GAEQFGEEAVPEGAGLGAQP 62
           PSGA+  PP   AP A G      +A +++++    G      + GEE VP G     QP
Sbjct: 842 PSGATALPPTSAAPSAQGSPQ--PSASSSSQFSTSGGPWARERRAGEEPVP-GPMTPTQP 898

Query: 63  PPHLQRPQVQT 73
           PP L  P  ++
Sbjct: 899 PPPLSLPPARS 909


>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
          Length = 689

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 42/156 (26%), Positives = 56/156 (35%), Gaps = 22/156 (14%)

Query: 6   PSGASHFPPIGGAPVAVGEEAVFTAAGAAAR--WPLHTGGAEQFGEEAVPEGAGLGAQPP 63
           P GA+  P I G     G   +  +AG A +   P H G A   G+     G G   +P 
Sbjct: 296 PKGATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPG 355

Query: 64  PHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVGHPH 123
           P              P    GEP     + P         +G+ G   D+ +   VG P 
Sbjct: 356 PQ------GLPGFSGPPGKEGEPGPRGEIGP---------QGIMGQKGDQGERGPVGQPG 400

Query: 124 PQG----PGERGSTVFKDVGVDPGTLGSQ-SPSQLG 154
           PQG     GE+G          PG  G + SP + G
Sbjct: 401 PQGRQGPKGEQGPPGIPGPQGLPGVKGDKGSPGKTG 436


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 18/146 (12%)

Query: 1    MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
            MG   P G      + G P  VGE  +  A G         G     G   +P   GL  
Sbjct: 1345 MGARGPPGRVGPEGLRGIPGPVGEPGLLGAPG-------QMGPPGPLGPSGLP---GLKG 1394

Query: 61   QPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVG 120
               P  ++  +    L+ P   +GE +  + LP      V+   G +GDP     + ++G
Sbjct: 1395 DTGPKGEKGHIGLIGLIGPPGEAGE-KGDQGLP-----GVQGPPGPKGDPGPPGPIGSLG 1448

Query: 121  HPHPQGPGERGSTVFKDVGVDPGTLG 146
            HP P  PG  G    K     PG++G
Sbjct: 1449 HPGP--PGVAGPLGQKGSKGSPGSMG 1472


>gi|194353946 homeobox D12 [Homo sapiens]
          Length = 270

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 10  SHFPPIGGA-----PVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAG---LGAQ 61
           S+  P GG      P++    A+  AA  A+  P    GA  FG  + P  AG   LG Q
Sbjct: 27  SNLRPNGGQLAALPPISYPRGALPWAATPASCAPAQPAGATAFGGFSQPYLAGSGPLGLQ 86

Query: 62  PPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLP 93
           PP     P+ Q     +P   +G  +R R  P
Sbjct: 87  PPTAKDGPEEQAK-FYAPEAAAGPEERGRTRP 117


>gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 19/83 (22%)

Query: 31 AGAAARWPL------HTGGAEQFGE-----EAVPEGAGLGAQPPPHLQRP---QVQTNVL 76
          AG A R P          GAE + E      A P GA   A+P P    P     + + L
Sbjct: 7  AGRAGRGPWIIRGASRPSGAESYSELLSSRPASPRGASFSAEPRPRASLPPPRPARPSHL 66

Query: 77 LSPRRLSGEP-----QRTRPLPP 94
          L P+RL G P      R   LPP
Sbjct: 67 LWPKRLPGRPGRAPGDRRAALPP 89


>gi|153945780 inter-alpha trypsin inhibitor heavy chain precursor 5
           isoform 1 [Homo sapiens]
          Length = 956

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 40  HTGGAEQFGEEAVPEGAGLGAQPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSN 99
           H   A    E  V    G G QP P L++P  Q  + +S   + G+P      P    S 
Sbjct: 637 HGMSAAMGPEPVVQSVRGAGTQPGPLLKKP-YQPRIKISKTSVDGDPHFVVDFP---LSR 692

Query: 100 VRVSRGVQGDPKDELDLVA 118
           + V   + G P D L LV+
Sbjct: 693 LTVCFNIDGQPGDILRLVS 711


>gi|153945711 inter-alpha trypsin inhibitor heavy chain precursor 5
           isoform 2 [Homo sapiens]
          Length = 742

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 40  HTGGAEQFGEEAVPEGAGLGAQPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSN 99
           H   A    E  V    G G QP P L++P  Q  + +S   + G+P      P    S 
Sbjct: 423 HGMSAAMGPEPVVQSVRGAGTQPGPLLKKP-YQPRIKISKTSVDGDPHFVVDFP---LSR 478

Query: 100 VRVSRGVQGDPKDELDLVA 118
           + V   + G P D L LV+
Sbjct: 479 LTVCFNIDGQPGDILRLVS 497


>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
          Length = 1712

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 79  PRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVGHPHPQG-PGERGSTVFKD 137
           PR L G+  R     P  F   R S+G  G P  +     +G P P G PGERG    + 
Sbjct: 718 PRGLPGDAGREGFPGPPGFIGPRGSKGAVGLPGPDGSPGPIGLPGPDGPPGERG-LPGEV 776

Query: 138 VGVDPGTLGSQS-PSQLG 154
           +G  PG  G    P Q G
Sbjct: 777 LGAQPGPRGDAGVPGQPG 794


>gi|40807447 papillary renal cell carcinoma translocation-associated
           gene product isoform 1 [Homo sapiens]
          Length = 491

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 35/118 (29%), Positives = 47/118 (39%), Gaps = 15/118 (12%)

Query: 14  PIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQPPPHLQRPQVQT 73
           P    P    EEAV   +G A       GG   F     P+G  L   PPP +  P    
Sbjct: 14  PDEAEPEPEEEEAVAPTSGPAL------GGL--FASLPAPKGPAL-LPPPPQMLAPAFPP 64

Query: 74  NVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDL---VAVGHPHPQGPG 128
            +LL P   +G+P R +P PP  F            P +   +   + +G P P+GPG
Sbjct: 65  PLLLPPP--TGDP-RLQPPPPLPFGLGGFPPPPGVSPAEAAGVGEGLGLGLPSPRGPG 119


>gi|40807450 papillary renal cell carcinoma translocation-associated
           gene product isoform 2 [Homo sapiens]
          Length = 459

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 35/118 (29%), Positives = 47/118 (39%), Gaps = 15/118 (12%)

Query: 14  PIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQPPPHLQRPQVQT 73
           P    P    EEAV   +G A       GG   F     P+G  L   PPP +  P    
Sbjct: 14  PDEAEPEPEEEEAVAPTSGPAL------GGL--FASLPAPKGPAL-LPPPPQMLAPAFPP 64

Query: 74  NVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDL---VAVGHPHPQGPG 128
            +LL P   +G+P R +P PP  F            P +   +   + +G P P+GPG
Sbjct: 65  PLLLPPP--TGDP-RLQPPPPLPFGLGGFPPPPGVSPAEAAGVGEGLGLGLPSPRGPG 119


>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
          Length = 1388

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 45/173 (26%), Positives = 64/173 (36%), Gaps = 39/173 (22%)

Query: 9   ASHFPPIGGAPVAVG---EEAVFTAAG-------AAARWPLHTGGAEQFGEEAVPEGAGL 58
           AS  P  G AP+      E AV +  G       A    PL T G E+ G    P+G   
Sbjct: 478 ASGVPTDGLAPLTATMAPERAVTSGPGDEEDLAAATTEEPLITAGGEESGSPP-PDG--- 533

Query: 59  GAQPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVA 118
                P L  P V     ++P +      + +  P          +G +GD  +EL    
Sbjct: 534 -----PPLPLPTVAPERWITPAQREHVGMKGQAGP----------KGEKGDAGEELP--- 575

Query: 119 VGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLP 171
            G P P GP      V    G +    G    S +G G+ D+V +  + +G P
Sbjct: 576 -GPPEPSGP------VGPTAGAEAEGSGLGWGSDVGSGSGDLVGSEQLLRGPP 621


>gi|239757832 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 503

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 120 GHPHPQGPGERGST-VFKDVGVDPGTLGSQSPS 151
           GHP P+G   +GST ++ D+ V P   G+ SPS
Sbjct: 120 GHPSPEGATAKGSTDIWADLEVGPSWRGALSPS 152


>gi|239752343 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 518

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 120 GHPHPQGPGERGST-VFKDVGVDPGTLGSQSPS 151
           GHP P+G   +GST ++ D+ V P   G+ SPS
Sbjct: 120 GHPSPEGATAKGSTDIWADLEVGPSWRGALSPS 152


>gi|239746856 PREDICTED: hypothetical protein XP_002343859 [Homo
           sapiens]
          Length = 518

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 120 GHPHPQGPGERGST-VFKDVGVDPGTLGSQSPS 151
           GHP P+G   +GST ++ D+ V P   G+ SPS
Sbjct: 120 GHPSPEGATAKGSTDIWADLEVGPSWRGALSPS 152


>gi|38373671 SEC24-related protein C [Homo sapiens]
          Length = 1094

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 54/212 (25%), Positives = 80/212 (37%), Gaps = 44/212 (20%)

Query: 6   PSGASHFPPIGGAPVAVGEEAVF--TAAGAAARWPLHTG-----------GAEQFGEEAV 52
           P G S  PP  GAP A   +A     A G   +  +  G           G++ FG    
Sbjct: 56  PQGMSRAPPSSGAPPASTAQAPCGQAAYGQFGQGDVQNGPSSTVQMQRLPGSQPFGSPLA 115

Query: 53  PEGAGLGAQPP---PHLQRP-QVQTNVLLSPRRLSGEPQRTRPL------PPTTFSNVRV 102
           P    +G QPP   P+   P   Q    LS  ++SG      P       PPT+ ++   
Sbjct: 116 P----VGNQPPVLQPYGPPPTSAQVATQLSGMQISGAVAPAPPSSGLGFGPPTSLASASG 171

Query: 103 S---RGVQGD-PKDELDLV--AVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLG-- 154
           S    G+ G  P+ +   +  A GHP  Q P +R +         P + G + PS  G  
Sbjct: 172 SFPNSGLYGSYPQGQAPPLSQAQGHPGIQTP-QRSAPSQASSFTPPASGGPRLPSMTGPL 230

Query: 155 -----HGAHDIVVAHHIA---QGLPQACRVLG 178
                 G   +   +H++   Q LP   ++ G
Sbjct: 231 LPGQSFGGPSVSQPNHVSSPPQALPPGTQMTG 262


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.136    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,212,565
Number of Sequences: 37866
Number of extensions: 1135038
Number of successful extensions: 3598
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 3506
Number of HSP's gapped (non-prelim): 192
length of query: 369
length of database: 18,247,518
effective HSP length: 104
effective length of query: 265
effective length of database: 14,309,454
effective search space: 3792005310
effective search space used: 3792005310
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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