Guide to the Human Genome
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Name: ASPSCR1 Sequence: fasta or formatted (553aa) NCBI GI: 13129078
Description:

alveolar soft part sarcoma chromosome region, candidate 1

Referenced in:

Kidney
Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         50           3
 C cysteine            1.6          9           2
 D aspartate           4.9         27           2
 E glutamate           8.0         44           2
 F phenylalanine       3.4         19           2
 G glycine             7.4         41           4
 H histidine           1.6          9           1
 I isoleucine          1.3          7           1
 K lysine              4.5         25           2
 L leucine            10.8         60           2
 M methionine          0.9          5           1
 N asparagine          1.4          8           2
 P proline            10.8         60           2
 Q glutamine           5.2         29           2
 R arginine            7.6         42           3
 S serine              8.1         45           3
 T threonine           4.7         26           2
 V valine              6.3         35           2
 W tryptophan          0.7          4           1
 Y tyrosine            1.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alveolar soft part sarcoma chromosome region, candid... 
UBXN6                 0.041   UBX domain protein 6 
ENAH                  0.021   enabled homolog isoform a 
ENAH                  0.021   enabled homolog isoform b 
SLC24A1               0.019   solute carrier family 24 (sodium/potassium/calcium ex...
EIF3A                 0.019   eukaryotic translation initiation factor 3, subunit 1...
ARX                   0.019   aristaless related homeobox 
UBXN11                0.018   socius isoform 3 
UBXN11                0.018   socius isoform 1 
UBXN11                0.018   socius isoform 2 
PELP1                 0.018   proline, glutamic acid and leucine rich protein 1 [...
BSN                   0.017   bassoon protein 
MAP7D1                0.016   MAP7 domain containing 1 
LOC651986             0.016   PREDICTED: similar to forkhead box L2 
TBC1D10B              0.016   TBC1 domain family, member 10B 
C6orf174              0.015   hypothetical protein LOC387104 
NSFL1C                0.015   p47 protein isoform a 
NSFL1C                0.015   p47 protein isoform c 
MAP7                  0.015   microtubule-associated protein 7 
FMN2                  0.014   formin 2 
TNKS                  0.014   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
PPP1R12C              0.014   protein phosphatase 1, regulatory subunit 12C 
MCTP1                 0.014   multiple C2 domains, transmembrane 1 isoform L [Hom...
RBM25                 0.013   RNA binding motif protein 25 
LOC100131202          0.013   PREDICTED: hypothetical protein 
SETD1A                0.013   SET domain containing 1A 
CASZ1                 0.013   castor homolog 1, zinc finger isoform a 
AKAP12                0.013   A kinase (PRKA) anchor protein 12 isoform 1 
AKAP12                0.013   A kinase (PRKA) anchor protein 12 isoform 2 
PRB2                  0.013   proline-rich protein BstNI subfamily 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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