Guide to the Human Genome
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Name: CCAR1 Sequence: fasta or formatted (1150aa) NCBI GI: 46852388
Description:

cell-cycle and apoptosis regulatory protein 1

Referenced in:

Small RNAs in RNA Processing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         65           7
 C cysteine            1.0         12           2
 D aspartate           7.6         87           3
 E glutamate          10.2        117           4
 F phenylalanine       2.8         32           2
 G glycine             3.3         38           2
 H histidine           1.5         17           1
 I isoleucine          2.7         31           2
 K lysine              8.6         99           2
 L leucine             9.5        109           3
 M methionine          2.0         23           2
 N asparagine          3.3         38           2
 P proline             6.1         70           2
 Q glutamine           8.3         96           3
 R arginine            7.1         82           3
 S serine              6.8         78           2
 T threonine           5.3         61           2
 V valine              5.2         60           2
 W tryptophan          0.8          9           1
 Y tyrosine            2.3         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cell-cycle and apoptosis regulatory protein 1 
KIAA1967              0.125   p30 DBC protein 
KIAA1967              0.125   p30 DBC protein 
WDR87                 0.025   NYD-SP11 protein 
CYLC1                 0.024   cylicin, basic protein of sperm head cytoskeleton 1...
LOC283685             0.024   PREDICTED: golgi autoantigen, golgin subfamily a-li...
EIF5B                 0.024   eukaryotic translation initiation factor 5B 
LOC100286959          0.023   PREDICTED: hypothetical protein XP_002343921 
GOLGA4                0.022   golgi autoantigen, golgin subfamily a, 4 
TCHH                  0.022   trichohyalin 
ARID4B                0.022   AT rich interactive domain 4B isoform 1 
LOC100131202          0.022   PREDICTED: hypothetical protein 
UPF3B                 0.021   UPF3 regulator of nonsense transcripts homolog B iso...
LOC727832             0.020   golgi autoantigen, golgin subfamily a-like 
CALD1                 0.020   caldesmon 1 isoform 1 
LOC283767             0.020   golgi autoantigen, golgin subfamily a-like 
LOC440243             0.020   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC283685             0.020   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100133599          0.020   PREDICTED: hypothetical protein 
INCENP                0.020   inner centromere protein antigens 135/155kDa isofor...
RBM25                 0.019   RNA binding motif protein 25 
LOC100294088          0.019   PREDICTED: hypothetical protein, partial 
LOC645202             0.019   PREDICTED: hypothetical protein LOC645202 
MYH10                 0.019   myosin, heavy polypeptide 10, non-muscle 
LOC100133599          0.019   PREDICTED: hypothetical protein 
ANKRD12               0.019   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.019   ankyrin repeat domain 12 isoform 1 
CYLC2                 0.018   cylicin 2 
SFRS12                0.018   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.018   splicing factor, arginine/serine-rich 12 isoform b [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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