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Search of human proteins with 239747220
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747220 PREDICTED: hypothetical protein XP_002346936 [Homo
sapiens]
(144 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752683 PREDICTED: hypothetical protein [Homo sapiens] 318 8e-88
gi|239747220 PREDICTED: hypothetical protein XP_002346936 [Homo ... 318 8e-88
gi|239741028 PREDICTED: hypothetical protein XP_002342067 [Homo ... 318 8e-88
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 33 0.083
gi|89242152 small nuclear RNA activating complex, polypeptide 3,... 33 0.11
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 31 0.31
gi|118601081 heterogeneous nuclear ribonucleoprotein U-like 2 [H... 31 0.31
gi|30410035 late cornified envelope 5A [Homo sapiens] 31 0.41
gi|188035924 aldehyde dehydrogenase 7 family, member A1 [Homo sa... 30 0.54
gi|21040334 B-cell CLL/lymphoma 11B isoform 1 [Homo sapiens] 30 0.54
gi|12597635 B-cell CLL/lymphoma 11B isoform 2 [Homo sapiens] 30 0.54
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 30 0.91
gi|38373677 guanine nucleotide-releasing factor 2 isoform b [Hom... 30 0.91
gi|38373675 guanine nucleotide-releasing factor 2 isoform a [Hom... 30 0.91
gi|62122917 filaggrin family member 2 [Homo sapiens] 29 1.2
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 29 1.2
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 29 1.6
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 29 1.6
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 29 1.6
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 29 1.6
gi|88196790 coiled-coil domain containing 88 [Homo sapiens] 29 1.6
gi|4503313 diacylglycerol kinase epsilon [Homo sapiens] 28 2.0
gi|67003568 skin-specific protein 32 [Homo sapiens] 28 2.7
gi|21614513 aldehyde dehydrogenase 1 family, member L1 [Homo sap... 28 2.7
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 28 2.7
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 28 2.7
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 28 3.5
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 28 3.5
gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens] 28 3.5
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 27 4.5
>gi|239752683 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 318 bits (816), Expect = 8e-88
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MAGWSVERGVFQKQQGGQRGCCEQRGTGVDPGQGFQRRLEPCGSGSDLGSRGDPSCCAVG 60
MAGWSVERGVFQKQQGGQRGCCEQRGTGVDPGQGFQRRLEPCGSGSDLGSRGDPSCCAVG
Sbjct: 1 MAGWSVERGVFQKQQGGQRGCCEQRGTGVDPGQGFQRRLEPCGSGSDLGSRGDPSCCAVG 60
Query: 61 GQKEWVEGPGGDRQEGTEAWTQNMERSQEPGKALEVEQLALLMDGDRIPRPEVPEQGVSS 120
GQKEWVEGPGGDRQEGTEAWTQNMERSQEPGKALEVEQLALLMDGDRIPRPEVPEQGVSS
Sbjct: 61 GQKEWVEGPGGDRQEGTEAWTQNMERSQEPGKALEVEQLALLMDGDRIPRPEVPEQGVSS 120
Query: 121 AGLWGHSWRLWGQPTEGEHGWWAG 144
AGLWGHSWRLWGQPTEGEHGWWAG
Sbjct: 121 AGLWGHSWRLWGQPTEGEHGWWAG 144
>gi|239747220 PREDICTED: hypothetical protein XP_002346936 [Homo
sapiens]
Length = 144
Score = 318 bits (816), Expect = 8e-88
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MAGWSVERGVFQKQQGGQRGCCEQRGTGVDPGQGFQRRLEPCGSGSDLGSRGDPSCCAVG 60
MAGWSVERGVFQKQQGGQRGCCEQRGTGVDPGQGFQRRLEPCGSGSDLGSRGDPSCCAVG
Sbjct: 1 MAGWSVERGVFQKQQGGQRGCCEQRGTGVDPGQGFQRRLEPCGSGSDLGSRGDPSCCAVG 60
Query: 61 GQKEWVEGPGGDRQEGTEAWTQNMERSQEPGKALEVEQLALLMDGDRIPRPEVPEQGVSS 120
GQKEWVEGPGGDRQEGTEAWTQNMERSQEPGKALEVEQLALLMDGDRIPRPEVPEQGVSS
Sbjct: 61 GQKEWVEGPGGDRQEGTEAWTQNMERSQEPGKALEVEQLALLMDGDRIPRPEVPEQGVSS 120
Query: 121 AGLWGHSWRLWGQPTEGEHGWWAG 144
AGLWGHSWRLWGQPTEGEHGWWAG
Sbjct: 121 AGLWGHSWRLWGQPTEGEHGWWAG 144
>gi|239741028 PREDICTED: hypothetical protein XP_002342067 [Homo
sapiens]
Length = 144
Score = 318 bits (816), Expect = 8e-88
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MAGWSVERGVFQKQQGGQRGCCEQRGTGVDPGQGFQRRLEPCGSGSDLGSRGDPSCCAVG 60
MAGWSVERGVFQKQQGGQRGCCEQRGTGVDPGQGFQRRLEPCGSGSDLGSRGDPSCCAVG
Sbjct: 1 MAGWSVERGVFQKQQGGQRGCCEQRGTGVDPGQGFQRRLEPCGSGSDLGSRGDPSCCAVG 60
Query: 61 GQKEWVEGPGGDRQEGTEAWTQNMERSQEPGKALEVEQLALLMDGDRIPRPEVPEQGVSS 120
GQKEWVEGPGGDRQEGTEAWTQNMERSQEPGKALEVEQLALLMDGDRIPRPEVPEQGVSS
Sbjct: 61 GQKEWVEGPGGDRQEGTEAWTQNMERSQEPGKALEVEQLALLMDGDRIPRPEVPEQGVSS 120
Query: 121 AGLWGHSWRLWGQPTEGEHGWWAG 144
AGLWGHSWRLWGQPTEGEHGWWAG
Sbjct: 121 AGLWGHSWRLWGQPTEGEHGWWAG 144
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 33.1 bits (74), Expect = 0.083
Identities = 26/70 (37%), Positives = 28/70 (40%), Gaps = 15/70 (21%)
Query: 21 CCEQRGTGVDPGQGFQRRLEP-----CGSGSDLGSRGDP-------SCCAVGGQKE-WVE 67
CC Q GT P Q QR P CG RG P SC + G +
Sbjct: 825 CCSQPGT--QPAQEAQRGPSPEASWLCGRYCPTPPRGRPCPQRRSSSCGSTGSSHQSTAR 882
Query: 68 GPGGDRQEGT 77
GPGG QEGT
Sbjct: 883 GPGGSPQEGT 892
>gi|89242152 small nuclear RNA activating complex, polypeptide 3,
50kDa [Homo sapiens]
Length = 411
Score = 32.7 bits (73), Expect = 0.11
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 49 GSRGDPSCCAVGGQKEWVEGPGG 71
GSRG P+C VGG+++ V G GG
Sbjct: 4 GSRGGPTCSGVGGRQDPVSGSGG 26
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 31.2 bits (69), Expect = 0.31
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 17 GQRGCCEQRGTGVDPG-QGFQRRLEPCGSGSDLGSRGDPSCCAVGGQKEWVEGPGGDRQE 75
G +G RG PG +G Q P G+ +LG RG P GQK + PG + +
Sbjct: 786 GPKGLLGNRGPPGPPGLKGTQGEEGPIGAFGELGPRGKP------GQKGYAGEPGPEGLK 839
Query: 76 GTEAWTQNMERSQEPG 91
G N+ + E G
Sbjct: 840 GEVGDQGNIGKIGETG 855
>gi|118601081 heterogeneous nuclear ribonucleoprotein U-like 2 [Homo
sapiens]
Length = 747
Score = 31.2 bits (69), Expect = 0.31
Identities = 35/118 (29%), Positives = 44/118 (37%), Gaps = 26/118 (22%)
Query: 18 QRGCCEQRGTGVDPGQGFQRRL-------EPCGSGSDLGS--RGDPSCCAVGGQKEWVEG 68
QR + RG VD Q Q L E G G+ G + +P A G G
Sbjct: 16 QRRGLDSRGLKVDLAQRLQEALDAEMLEDEAGGGGAGPGGACKAEPRPVAASGG-----G 70
Query: 69 PGGDRQEGTEAWTQNME-----RSQEPGKALEVEQLALLMDGDRIPRPEVPEQGVSSA 121
PGGD +E E ++ E +EP A + Q A P PE PE A
Sbjct: 71 PGGDEEEDEEEEEEDEEALLEDEDEEPPPAQALGQAAQ-------PPPEPPEAAAMEA 121
>gi|30410035 late cornified envelope 5A [Homo sapiens]
Length = 118
Score = 30.8 bits (68), Expect = 0.41
Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 20 GCCEQRGTGV-----DPGQGFQRRLEP---CGSGSDLGSRGDPSCCAVGGQKEWVEGPGG 71
GCC G G P Q +RR + CGSGS S G SCC G GG
Sbjct: 58 GCCSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQS-GGSSCCHSSGGSGCCHSSGG 116
>gi|188035924 aldehyde dehydrogenase 7 family, member A1 [Homo
sapiens]
Length = 539
Score = 30.4 bits (67), Expect = 0.54
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 11/44 (25%)
Query: 44 SGSDLGSRGDPSCCAVGGQKEWVEGPGGDRQEGTEAWTQNMERS 87
SG+++G A GG+K GG R+ G++AW Q M RS
Sbjct: 488 SGAEIGG-------AFGGEKH----TGGGRESGSDAWKQYMRRS 520
>gi|21040334 B-cell CLL/lymphoma 11B isoform 1 [Homo sapiens]
Length = 894
Score = 30.4 bits (67), Expect = 0.54
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 39 LEPCGSGSDLGSRGDPSCCAVGGQKEWVEGPGGDRQEGTEAWTQNMERS----QEPGKAL 94
L+ G D G D C G V G GG GTE + R PG
Sbjct: 624 LKRAAGGGDAGDDDDAGGCGDAGAGGAVNGRGGGFAPGTEPFPGLFPRKPAPLPSPGLNS 683
Query: 95 EVEQLALLMDGDRIPRPEVPEQGVSSAGLWGHS 127
+++ + D + P +P + V S L G++
Sbjct: 684 AAKRIKVEKDLELPPAALIPSENVYSQWLVGYA 716
>gi|12597635 B-cell CLL/lymphoma 11B isoform 2 [Homo sapiens]
Length = 823
Score = 30.4 bits (67), Expect = 0.54
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 39 LEPCGSGSDLGSRGDPSCCAVGGQKEWVEGPGGDRQEGTEAWTQNMERS----QEPGKAL 94
L+ G D G D C G V G GG GTE + R PG
Sbjct: 553 LKRAAGGGDAGDDDDAGGCGDAGAGGAVNGRGGGFAPGTEPFPGLFPRKPAPLPSPGLNS 612
Query: 95 EVEQLALLMDGDRIPRPEVPEQGVSSAGLWGHS 127
+++ + D + P +P + V S L G++
Sbjct: 613 AAKRIKVEKDLELPPAALIPSENVYSQWLVGYA 645
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 29.6 bits (65), Expect = 0.91
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 17 GQRGCCEQRGTGVDPG-------QGFQRRLEPCGSGSDLGSRGDPSCCAVGGQ-----KE 64
G+ G +RG DPG QG P G+ D G RGDP G K
Sbjct: 1059 GRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKR 1118
Query: 65 WVEGPGGDR 73
+ GP G R
Sbjct: 1119 GLPGPQGPR 1127
Score = 29.3 bits (64), Expect = 1.2
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 15 QGGQRGCCEQRGTGVDPGQGFQRRLEPCGSGSDLGSRGDPSCCAVGGQKEWVEGPGGDRQ 74
+GG+ G +G DPG L P G + G RG+P + G+K G G D
Sbjct: 688 EGGKPG---DQGVPGDPGA--VGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGP 742
Query: 75 EGT 77
+G+
Sbjct: 743 KGS 745
Score = 28.1 bits (61), Expect = 2.7
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 17 GQRGCCEQRGTGVDPG-QGFQRRLEPCGSGSDLGSRGDPSCCAVGGQKEWVEGPG----- 70
G+ G RG +PG QG + +L P G+ + G G P + GQ + PG
Sbjct: 564 GEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSS 623
Query: 71 GDRQEGTEAWTQNMERSQ-EPGKALEV 96
GD + EA + + PGK EV
Sbjct: 624 GDPGKPGEAGNAGVPGQRGAPGKDGEV 650
Score = 26.9 bits (58), Expect = 5.9
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 17 GQRGCCEQRG----TGVDPGQGFQRRLEPCGSGSDLGSRGDP 54
G+RG RG G+ +G Q P GS GS+GDP
Sbjct: 519 GERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDP 560
>gi|38373677 guanine nucleotide-releasing factor 2 isoform b [Homo
sapiens]
Length = 1095
Score = 29.6 bits (65), Expect = 0.91
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 36 QRRLEPCGSGSDLGSRGDPSCCAVGGQKEWVEGPGGDRQEGTEAWTQNMERSQEPGKALE 95
QR+LEP +G D G DPS AV G PG D ++G+E ++ + + E
Sbjct: 633 QRQLEP-PAGKD-GHPRDPS--AVSGV------PGKDSRDGSERAPKSPDALESAQSEEE 682
Query: 96 VEQLALLMDGDRIPRPEVPEQGVSSAGLWGHS 127
V++L+L+ + + R + ++G + G S
Sbjct: 683 VDELSLIDHNEIMSRLTLKQEGDDGPDVRGGS 714
>gi|38373675 guanine nucleotide-releasing factor 2 isoform a [Homo
sapiens]
Length = 1077
Score = 29.6 bits (65), Expect = 0.91
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 36 QRRLEPCGSGSDLGSRGDPSCCAVGGQKEWVEGPGGDRQEGTEAWTQNMERSQEPGKALE 95
QR+LEP +G D G DPS AV G PG D ++G+E ++ + + E
Sbjct: 615 QRQLEP-PAGKD-GHPRDPS--AVSGV------PGKDSRDGSERAPKSPDALESAQSEEE 664
Query: 96 VEQLALLMDGDRIPRPEVPEQGVSSAGLWGHS 127
V++L+L+ + + R + ++G + G S
Sbjct: 665 VDELSLIDHNEIMSRLTLKQEGDDGPDVRGGS 696
>gi|62122917 filaggrin family member 2 [Homo sapiens]
Length = 2391
Score = 29.3 bits (64), Expect = 1.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 23 EQRGTGVDPGQGFQRRLEPCGSGSDLGSRGDPSCCAVG 60
EQ GTG+ GF++ + CGSG G S ++G
Sbjct: 430 EQHGTGLSQSSGFEQHV--CGSGQTCGQHESTSSQSLG 465
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 29.3 bits (64), Expect = 1.2
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 16/93 (17%)
Query: 15 QGGQRGCCEQRGTGVDPG-QGFQRRLEPC---GSGSDLGSRG------------DPSCCA 58
Q G +G +RG PG QGF P G+ D G+ G P A
Sbjct: 1246 QKGDQGAPGERGPPGSPGLQGFPGITPPSNISGAPGDKGAPGIFGLKGYRGPPGPPGSAA 1305
Query: 59 VGGQKEWVEGPGGDRQEGTEAWTQNMERSQEPG 91
+ G K PG GT+ W + PG
Sbjct: 1306 LPGSKGDTGNPGAPGTPGTKGWAGDSGPQGRPG 1338
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 28.9 bits (63), Expect = 1.6
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 17 GQRGCCEQRGTGVDPG-------QGFQRRLEPCGSGSDLGSRGDPSCCAVGGQKEWV--- 66
G +G + G DPG +G + L P G+ +G++G+P G K V
Sbjct: 1261 GYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPL 1320
Query: 67 --EGPGGDRQEGTE 78
GP G++ E E
Sbjct: 1321 GPPGPKGEKGEQGE 1334
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sapiens]
Length = 2365
Score = 28.9 bits (63), Expect = 1.6
Identities = 34/122 (27%), Positives = 42/122 (34%), Gaps = 31/122 (25%)
Query: 31 PG-QGFQRRLEPCGSGSDLG-------SRGDPSCCAVGGQKEWVEGPGGDRQEGTEAWTQ 82
PG QG R LE S + G G+PS +G K GG +E E+W Q
Sbjct: 1434 PGSQGPHRHLERSWSSQEGGLGPGGWWGCGEPS---LGAAKAPEGAWGGTSREYKESWGQ 1490
Query: 83 NMERSQEPGKALEVEQLALLMDGDRIPRPEVPEQGVSSAGLWGHSWRLWGQPTEGEHGWW 142
++P L E G R P PE WG P E W
Sbjct: 1491 PEAWEEKPTHELPREL------GKRSPLTSPPEN--------------WGGPAESSQSWH 1530
Query: 143 AG 144
+G
Sbjct: 1531 SG 1532
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 28.9 bits (63), Expect = 1.6
Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 9/125 (7%)
Query: 17 GQRGCCEQRGTGVDPGQ-GFQRRLEPCGSGSDLGSRGDPSCCAVGGQKEWVEGPGGDRQE 75
G+ G G +PG+ G Q + P G GS G P + GQK PG Q
Sbjct: 213 GKDGPRGMPGVPGEPGKPGEQGLMGPLGPPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQN 272
Query: 76 GTEAWTQNMERSQEPGKALEVEQLALLMDGDRIPRPEVPEQGVSSAGLWGHSWRLWGQPT 135
G E G A E +G + E + G S+AG+ G
Sbjct: 273 GIPGPKGEPGEQGEKGDAGE--------NGPKGDTGEKGDPGSSAAGIKGEPGESGRPGQ 324
Query: 136 EGEHG 140
+GE G
Sbjct: 325 KGEPG 329
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 28.9 bits (63), Expect = 1.6
Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 9/125 (7%)
Query: 17 GQRGCCEQRGTGVDPGQ-GFQRRLEPCGSGSDLGSRGDPSCCAVGGQKEWVEGPGGDRQE 75
G+ G G +PG+ G Q + P G GS G P + GQK PG Q
Sbjct: 213 GKDGPRGMPGVPGEPGKPGEQGLMGPLGPPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQN 272
Query: 76 GTEAWTQNMERSQEPGKALEVEQLALLMDGDRIPRPEVPEQGVSSAGLWGHSWRLWGQPT 135
G E G A E +G + E + G S+AG+ G
Sbjct: 273 GIPGPKGEPGEQGEKGDAGE--------NGPKGDTGEKGDPGSSAAGIKGEPGESGRPGQ 324
Query: 136 EGEHG 140
+GE G
Sbjct: 325 KGEPG 329
>gi|88196790 coiled-coil domain containing 88 [Homo sapiens]
Length = 1476
Score = 28.9 bits (63), Expect = 1.6
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 58 AVGGQKEWVEGPGGDRQEGTEAWTQNMERSQEPGKALEVEQLALLMDGDRIPRP-EVPEQ 116
A+ GQ + +EG G Q + +R+QE L+ E+ L + G + R EV E+
Sbjct: 996 ALQGQLQHLEGQLGSLQGRAQELLLQSQRAQEHSSRLQAEKSVLEIQGQELHRKLEVLEE 1055
Query: 117 GVSSA 121
V +A
Sbjct: 1056 EVRAA 1060
>gi|4503313 diacylglycerol kinase epsilon [Homo sapiens]
Length = 567
Score = 28.5 bits (62), Expect = 2.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 97 EQLALLMDGDRIPRPEVPEQGVSSAGLWGHSWRLW 131
+++ L +DG+R+ P + V + G WG RLW
Sbjct: 425 KKVELELDGERVALPSLEGIIVLNIGYWGGGCRLW 459
>gi|67003568 skin-specific protein 32 [Homo sapiens]
Length = 250
Score = 28.1 bits (61), Expect = 2.7
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 17 GQRGCCEQRGTGVDPGQGFQRRLEPCGSGSDLGSRGDPSCCAVG 60
G GCCE G+ G G CG GS G CC +G
Sbjct: 196 GSSGCCENSGSSGCCGSG------GCGCSCGCGSSG---CCCLG 230
>gi|21614513 aldehyde dehydrogenase 1 family, member L1 [Homo
sapiens]
Length = 902
Score = 28.1 bits (61), Expect = 2.7
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 96 VEQLALLMDGDRIPRPEVPEQGVSSAGLWGHSWRL--WGQPTEGEHGWWAG 144
V+ + L+ +G + PR PE+G + G+ W QP E H W G
Sbjct: 177 VQAVRLIAEG-KAPRLPQPEEGATYEGIQKKETAKINWDQPAEAIHNWIRG 226
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 28.1 bits (61), Expect = 2.7
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 23 EQRGTGVDPGQGFQRRLEPCGSGSDLGSRGDPSCCAVGGQKEWVEGPG-GDRQEGTEAWT 81
E G G + G+G E G G + G G+ G+ E +G G G+ +EG W
Sbjct: 899 EGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEG--EWE 956
Query: 82 QNMERSQEPGK 92
E + G+
Sbjct: 957 GEEEEGEGEGE 967
Score = 27.3 bits (59), Expect = 4.5
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 22/91 (24%)
Query: 3 GWSVERGVFQKQQGGQRGCCEQRGTGVDPGQGFQ------------RRLEPCGS---GSD 47
G E G ++++G + E+ G G + G+G + ++ E G G +
Sbjct: 730 GGEEEHGEGEEEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEEKGEE 789
Query: 48 LGSRGDPSCCAVGGQKEWVEGPGGDRQEGTE 78
G +G+ G++E EG G +++EG E
Sbjct: 790 EGDQGE-------GEEEETEGRGEEKEEGGE 813
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 28.1 bits (61), Expect = 2.7
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 12 QKQQGGQRGCCEQRGTGVDPGQ-GFQRRLEPCGSGSDLGSRGDPSCCAVGGQKEWVEGPG 70
+K G G G PG+ G + + P G DLG GDP + G PG
Sbjct: 1230 EKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPG 1289
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 27.7 bits (60), Expect = 3.5
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 3 GWSVERGVFQKQQGGQRGCCEQRGTGVDPG-QGFQRRLEPCGSGSDLGSRG-DPSCCAVG 60
G+ +RG + +GG G ++ G G D G G R G G D G G D S G
Sbjct: 475 GYGGDRGGYGGDRGGGYGG-DRGGYGGDRGGYGGDRG----GYGGDRGGYGGDRSRGGYG 529
Query: 61 GQKEWVEGPGGDRQEG 76
G + G GGDR G
Sbjct: 530 GDRGGGSGYGGDRSGG 545
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 27.7 bits (60), Expect = 3.5
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 3 GWSVERGVFQKQQGGQRGCCEQRGTGVDPG-QGFQRRLEPCGSGSDLGSRG-DPSCCAVG 60
G+ +RG + +GG G ++ G G D G G R G G D G G D S G
Sbjct: 478 GYGGDRGGYGGDRGGGYGG-DRGGYGGDRGGYGGDRG----GYGGDRGGYGGDRSRGGYG 532
Query: 61 GQKEWVEGPGGDRQEG 76
G + G GGDR G
Sbjct: 533 GDRGGGSGYGGDRSGG 548
>gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens]
Length = 1035
Score = 27.7 bits (60), Expect = 3.5
Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 20/113 (17%)
Query: 2 AGWSVERGVFQKQ-----QGGQRGCCEQRGTGVDPGQGFQRRLEPCGSGSDLGSRGDPSC 56
AGW E G +++ +G + GC E+ G G +R P G D G P
Sbjct: 238 AGWR-EHGERRRKFEFDLRGDRGGCGEEEGRGGGGSSHLRRCRAPEGFEED--KDGLPEW 294
Query: 57 C------------AVGGQKEWVEGPGGDRQEGTEAWTQNMERSQEPGKALEVE 97
C A G +GP E E Q +E +EP + LE E
Sbjct: 295 CLDDEDEEMGTFDASGAFLPLKKGPKEPIPEEQELDFQGLEEEEEPSEGLEEE 347
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 27.3 bits (59), Expect = 4.5
Identities = 22/80 (27%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 17 GQRGCCEQRGTGVDPG----QGFQRRLEPCGSGSDLGSRGDPSCCAVGGQKEWVEGPGGD 72
GQ G ++G PG +G + P G + G RG P G PG
Sbjct: 1459 GQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAK 1518
Query: 73 RQEGTEAWTQNMERSQEPGK 92
EG T EPG+
Sbjct: 1519 GPEGPPGPTGRQGEKGEPGR 1538
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.136 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,759,392
Number of Sequences: 37866
Number of extensions: 437363
Number of successful extensions: 971
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 73
length of query: 144
length of database: 18,247,518
effective HSP length: 92
effective length of query: 52
effective length of database: 14,763,846
effective search space: 767719992
effective search space used: 767719992
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.