Guide to the Human Genome
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Name: SNAPC3 Sequence: fasta or formatted (411aa) NCBI GI: 89242152
Description:

small nuclear RNA activating complex, polypeptide 3, 50kDa

Referenced in:

RNA Polymerase and General Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         24           3
 C cysteine            4.1         17           1
 D aspartate           7.8         32           2
 E glutamate           8.5         35           2
 F phenylalanine       5.4         22           2
 G glycine             7.5         31           2
 H histidine           3.4         14           2
 I isoleucine          4.4         18           2
 K lysine              4.6         19           2
 L leucine             9.2         38           2
 M methionine          1.7          7           1
 N asparagine          2.9         12           2
 P proline             5.1         21           2
 Q glutamine           2.4         10           1
 R arginine            6.6         27           1
 S serine              5.6         23           1
 T threonine           4.9         20           1
 V valine              4.9         20           1
 W tryptophan          1.2          5           1
 Y tyrosine            3.9         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small nuclear RNA activating complex, polypeptide 3,... 
LOC100293712          0.009   PREDICTED: hypothetical protein 
LOC100290292          0.009   PREDICTED: hypothetical protein XP_002346936 
LOC100287356          0.009   PREDICTED: hypothetical protein XP_002342067 
DPF1                  0.008   D4, zinc and double PHD fingers family 1 isoform b ...
EME2                  0.008   essential meiotic endonuclease 1 homolog 2 
EHBP1L1               0.008   tangerin 
LOC100293985          0.006   PREDICTED: hypothetical protein 
LOC100289986          0.006   PREDICTED: hypothetical protein XP_002346657 
LOC100288009          0.006   PREDICTED: hypothetical protein XP_002342502 
PHF10                 0.006   PHD finger protein 10 isoform b 
PHF10                 0.006   PHD finger protein 10 isoform a 
ACVR1B                0.005   activin A receptor, type IB isoform c precursor [Hom...
ACVR1B                0.005   activin A receptor, type IB isoform b precursor [Hom...
ACVR1B                0.005   activin A receptor, type IB isoform a precursor [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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