Guide to the Human Genome
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Name: RAPGEF1 Sequence: fasta or formatted (1095aa) NCBI GI: 38373677
Description:

guanine nucleotide-releasing factor 2 isoform b

Referenced in:

Ras

Other entries for this name:
alt prot [1077aa] guanine nucleotide-releasing factor 2 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         67           2
 C cysteine            1.2         13           1
 D aspartate           6.2         68           2
 E glutamate           7.6         83           3
 F phenylalanine       3.5         38           2
 G glycine             4.7         52           2
 H histidine           2.0         22           1
 I isoleucine          4.0         44           2
 K lysine              6.8         75           2
 L leucine            10.7        117           3
 M methionine          1.9         21           1
 N asparagine          3.1         34           2
 P proline             8.6         94           3
 Q glutamine           5.2         57           2
 R arginine            5.5         60           2
 S serine              9.8        107           4
 T threonine           4.2         46           2
 V valine              5.4         59           2
 W tryptophan          0.8          9           1
 Y tyrosine            2.6         29           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   guanine nucleotide-releasing factor 2 isoform b [Hom... 
RAPGEF1               0.979   guanine nucleotide-releasing factor 2 isoform a [Hom...
RASGRF1               0.054   Ras protein-specific guanine nucleotide-releasing f...
RASGRF1               0.054   Ras protein-specific guanine nucleotide-releasing fa...
RASGRF1               0.054   Ras protein-specific guanine nucleotide-releasing fa...
SOS2                  0.051   son of sevenless homolog 2 
SOS1                  0.051   son of sevenless homolog 1 
RASGRF2               0.048   Ras protein-specific guanine nucleotide-releasing fa...
RAPGEF4               0.045   Rap guanine nucleotide exchange factor (GEF) 4 isof...
RAPGEF4               0.045   Rap guanine nucleotide exchange factor (GEF) 4 isof...
RAPGEF5               0.040   Rap guanine nucleotide exchange factor (GEF) 5 [Hom...
RASGRP3               0.039   RAS guanyl releasing protein 3 (calcium and DAG-reg...
RASGRP3               0.039   RAS guanyl releasing protein 3 (calcium and DAG-regu...
RASGRP3               0.038   RAS guanyl releasing protein 3 (calcium and DAG-regul...
RAPGEF3               0.038   Rap guanine nucleotide exchange factor 3 isoform b ...
RAPGEF3               0.038   Rap guanine nucleotide exchange factor 3 isoform b [...
RAPGEF3               0.038   Rap guanine nucleotide exchange factor 3 isoform a ...
RASGRP1               0.037   RAS guanyl releasing protein 1 isoform b 
RASGRP1               0.037   RAS guanyl releasing protein 1 isoform a 
RALGPS2               0.036   Ral GEF with PH domain and SH3 binding motif 2 [Homo...
RAPGEF2               0.035   Rap guanine nucleotide exchange factor 2 
RAPGEF6               0.034   PDZ domain-containing guanine nucleotide exchange fa...
RALGPS1               0.034   Ral GEF with PH domain and SH3 binding motif 1 
RASGRP2               0.031   RAS guanyl releasing protein 2 
RASGRP2               0.031   RAS guanyl releasing protein 2 
RASGRP2               0.031   RAS guanyl releasing protein 2 
RAPGEFL1              0.031   Rap guanine nucleotide exchange factor (GEF)-like 1 [...
RGL4                  0.031   ral guanine nucleotide dissociation stimulator-like ...
RGL1                  0.030   ral guanine nucleotide dissociation stimulator-like ...
RGL2                  0.029   ral guanine nucleotide dissociation stimulator-like 2...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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