Guide to the Human Genome
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Name: BCL11B Sequence: fasta or formatted (894aa) NCBI GI: 21040334
Description:

B-cell CLL/lymphoma 11B isoform 1

Referenced in:

B cells

Other entries for this name:
alt prot [823aa] B-cell CLL/lymphoma 11B isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         66           2
 C cysteine            3.0         27           2
 D aspartate           4.8         43           4
 E glutamate           7.4         66           9
 F phenylalanine       3.4         30           1
 G glycine            10.9         97           4
 H histidine           3.7         33           2
 I isoleucine          2.5         22           1
 K lysine              4.9         44           2
 L leucine             9.4         84           3
 M methionine          2.1         19           1
 N asparagine          2.8         25           1
 P proline            11.0         98           3
 Q glutamine           3.5         31           1
 R arginine            5.5         49           2
 S serine              9.3         83           3
 T threonine           3.8         34           2
 V valine              3.1         28           1
 W tryptophan          0.3          3           1
 Y tyrosine            1.3         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   B-cell CLL/lymphoma 11B isoform 1 
BCL11B                0.762   B-cell CLL/lymphoma 11B isoform 2 
BCL11A                0.532   B-cell CLL/lymphoma 11A isoform 1 
BCL11A                0.434   B-cell CLL/lymphoma 11A isoform 2 
BCL11A                0.109   B-cell CLL/lymphoma 11A isoform 3 
ZNF296                0.050   zinc finger protein 296 
LOC400682             0.036   PREDICTED: similar to hCG1776607 
ZNF768                0.035   zinc finger protein 768 
LOC400682             0.035   PREDICTED: similar to hCG1776607 
ZNF107                0.035   zinc finger protein 107 
ZNF107                0.035   zinc finger protein 107 
ZSCAN5B               0.034   zinc finger and SCAN domain containing 5B 
ZNF675                0.034   zinc finger protein 675 
ZNF730                0.034   PREDICTED: zinc finger protein 730 
ZNF730                0.034   PREDICTED: zinc finger protein 730 
ZNF730                0.034   PREDICTED: zinc finger protein 730 
LOC400682             0.034   PREDICTED: similar to hCG1776607 
ZNF493                0.034   zinc finger protein 493 isoform 1 
ZNF493                0.034   zinc finger protein 493 isoform 3 
ZNF678                0.034   zinc finger protein 678 
ZNF93                 0.034   zinc finger protein 93 
ZNF492                0.034   zinc finger protein 492 
ZNF98                 0.034   zinc finger protein 98 
ZNF626                0.033   zinc finger protein 626 isoform 1 
ZNF714                0.033   zinc finger protein 714 
ZNF253                0.033   zinc finger protein 253 
ZNF682                0.033   zinc finger protein 682 isoform 2 
ZNF682                0.033   zinc finger protein 682 isoform 1 
LOC344065             0.033   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.033   PREDICTED: similar to zinc finger protein 570 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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