Guide to the Human Genome
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Name: LOC100292028 Sequence: fasta or formatted (127aa) NCBI GI: 239758072
Description:

PREDICTED: hypothetical protein XP_002346286

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1          4           1
 C cysteine            5.5          7           1
 D aspartate           1.6          2           1
 E glutamate           2.4          3           1
 F phenylalanine       3.1          4           1
 G glycine             1.6          2           1
 H histidine           0.8          1           1
 I isoleucine         15.7         20           2
 K lysine              1.6          2           1
 L leucine             5.5          7           2
 M methionine          3.9          5           1
 N asparagine          1.6          2           1
 P proline             3.9          5           1
 Q glutamine           2.4          3           1
 R arginine            5.5          7           1
 S serine              3.1          4           2
 T threonine           9.4         12           1
 V valine              6.3          8           1
 W tryptophan          1.6          2           1
 Y tyrosine           21.3         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346286 
LOC100133547          1.000   PREDICTED: hypothetical protein 
LOC100288460          1.000   PREDICTED: hypothetical protein XP_002342485 
LOC100129825          0.337   PREDICTED: hypothetical protein 
LOC100287219          0.337   PREDICTED: hypothetical protein XP_002342512, parti...
LOC100134060          0.325   PREDICTED: hypothetical protein 
LOC100132782          0.321   PREDICTED: hypothetical protein 
LOC100288317          0.321   PREDICTED: hypothetical protein XP_002342505 
LOC100132983          0.321   PREDICTED: hypothetical protein 
LOC100134279          0.317   PREDICTED: hypothetical protein, partial 
LOC100134325          0.313   PREDICTED: hypothetical protein 
LOC100131203          0.313   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.313   PREDICTED: similar to serine/threonine-protein kina...
LOC100133226          0.310   PREDICTED: hypothetical protein 
LOC100131203          0.306   PREDICTED: hypothetical protein 
LOC100133807          0.306   PREDICTED: similar to serine/threonine-protein kina...
LOC100290334          0.298   PREDICTED: hypothetical protein XP_002346856, parti...
LOC100134576          0.298   PREDICTED: hypothetical protein 
LOC100293574          0.294   PREDICTED: hypothetical protein, partial 
LOC100134730          0.294   PREDICTED: hypothetical protein 
LOC100129642          0.294   PREDICTED: hypothetical protein 
LOC100131488          0.294   PREDICTED: hypothetical protein 
LOC100133515          0.294   PREDICTED: hypothetical protein 
LOC100132556          0.290   PREDICTED: hypothetical protein, partial 
LOC100129802          0.290   PREDICTED: hypothetical protein 
LOC100134447          0.290   PREDICTED: hypothetical protein 
LOC100134411          0.290   PREDICTED: hypothetical protein 
LOC100133741          0.286   PREDICTED: hypothetical protein 
LOC100132679          0.286   PREDICTED: hypothetical protein 
LOC100134139          0.286   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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