HOXA1 36538

Name: HOXA1	Sequence: fasta or formatted (137aa)		NCBI GI: 84697022
Description: homeobox A1 isoform b		Referenced in: HOX Genes
Other entries for this name: alt prot [335aa] homeobox A1 isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.3 10 1 C cysteine 2.9 4 1 D aspartate 5.8 8 2 E glutamate 1.5 2 1 F phenylalanine 4.4 6 1 G glycine 8.8 12 2 H histidine 8.8 12 10 I isoleucine 3.6 5 1 K lysine 0.0 0 0 L leucine 5.1 7 1 M methionine 1.5 2 1 N asparagine 4.4 6 1 P proline 8.0 11 2 Q glutamine 4.4 6 1 R arginine 5.1 7 1 S serine 16.8 23 2 T threonine 3.6 5 2 V valine 2.9 4 1 W tryptophan 0.0 0 0 Y tyrosine 5.1 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 homeobox A1 isoform b HOXA1 0.863 homeobox A1 isoform a DLX6 0.070 distal-less homeobox 6 ONECUT1 0.070 one cut homeobox 1 GATA6 0.063 GATA binding protein 6 PRRT1 0.063 NG5 protein HOXB1 0.063 homeobox B1 SORBS2 0.063 sorbin and SH3 domain containing 2 isoform 7 SORBS2 0.063 sorbin and SH3 domain containing 2 isoform 2 POU4F2 0.059 Brn3b POU domain transcription factor OTX1 0.059 orthodenticle homeobox 1 FOXG1 0.059 forkhead box G1 GSX2 0.059 GS homeobox 2 CACNA1A 0.056 calcium channel, alpha 1A subunit isoform 4 CACNA1A 0.056 calcium channel, alpha 1A subunit isoform 3 DLGAP3 0.056 discs, large (Drosophila) homolog-associated protei... C10orf140 0.056 hypothetical protein LOC387640 MEOX2 0.056 mesenchyme homeobox 2 FOXF2 0.056 forkhead box F2 ZCCHC14 0.052 zinc finger, CCHC domain containing 14 CBX4 0.052 chromobox homolog 4 ONECUT2 0.052 one cut domain, family member 2 NR4A3 0.052 nuclear receptor subfamily 4, group A, member 3 isof... NR4A3 0.052 nuclear receptor subfamily 4, group A, member 3 isof... NR4A3 0.052 nuclear receptor subfamily 4, group A, member 3 isof... NR4A3 0.052 nuclear receptor subfamily 4, group A, member 3 isof... DYRK1A 0.052 dual-specificity tyrosine-(Y)-phosphorylation regula... DYRK1A 0.052 dual-specificity tyrosine-(Y)-phosphorylation regula... USP34 0.052 ubiquitin specific protease 34 FAM76B 0.052 hypothetical protein LOC143684 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.