Guide to the Human Genome
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Name: LOC100292515 Sequence: fasta or formatted (321aa) NCBI GI: 239755402
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         37           3
 C cysteine            0.9          3           1
 D aspartate           7.2         23           2
 E glutamate           8.4         27           2
 F phenylalanine       0.3          1           1
 G glycine            11.2         36           3
 H histidine          10.0         32           3
 I isoleucine          0.9          3           1
 K lysine              0.6          2           1
 L leucine             6.2         20           2
 M methionine          0.6          2           1
 N asparagine          0.0          0           0
 P proline             6.9         22           2
 Q glutamine          13.1         42           3
 R arginine            8.1         26           3
 S serine              1.9          6           1
 T threonine           0.3          1           1
 V valine             10.9         35           2
 W tryptophan          0.6          2           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289910          1.000   PREDICTED: hypothetical protein XP_002347211 
LOC100287264          1.000   PREDICTED: hypothetical protein XP_002343075 
LOC100131909          0.040   PREDICTED: hypothetical protein 
LOC100131909          0.040   PREDICTED: hypothetical protein 
LOC100131909          0.040   PREDICTED: hypothetical protein 
LOC100292187          0.037   PREDICTED: hypothetical protein 
LOC100289845          0.037   PREDICTED: hypothetical protein XP_002348205 
LOC100289046          0.037   PREDICTED: hypothetical protein XP_002343864 
CATSPER1              0.025   sperm-associated cation channel 1 
HRC                   0.023   histidine rich calcium binding protein precursor [Hom...
RP1L1                 0.019   retinitis pigmentosa 1-like 1 
SEMG2                 0.017   semenogelin II precursor 
CACNA1B               0.017   calcium channel, voltage-dependent, N type, alpha 1B ...
GOLIM4                0.017   golgi integral membrane protein 4 
LOC100291755          0.015   PREDICTED: hypothetical protein XP_002345320 
LOC100290314          0.015   PREDICTED: hypothetical protein XP_002347649 
LOC100289552          0.015   PREDICTED: hypothetical protein XP_002342199 
BRD4                  0.015   bromodomain-containing protein 4 isoform long 
ACRV1                 0.014   acrosomal vesicle protein 1 isoform a precursor [Homo...
FLG                   0.012   filaggrin 
PAXIP1                0.012   PAX interacting protein 1 
SOX8                  0.012   SRY (sex determining region Y)-box 8 
NKX2-1                0.012   thyroid transcription factor 1 isoform 1 
NKX2-1                0.012   thyroid transcription factor 1 isoform 2 
LOC100292221          0.012   PREDICTED: hypothetical protein 
LOC100290704          0.012   PREDICTED: hypothetical protein XP_002347199 isofor...
LOC100290704          0.012   PREDICTED: hypothetical protein XP_002347198 isofor...
LOC100286939          0.012   PREDICTED: hypothetical protein XP_002343054 
IVL                   0.012   involucrin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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