Guide to the Human Genome
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Name: LOC100292716 Sequence: fasta or formatted (411aa) NCBI GI: 239758017
Description:

PREDICTED: similar to pseudoautosomal GTP-binding protein-like protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         30           3
 C cysteine            2.4         10           1
 D aspartate           3.9         16           1
 E glutamate           3.2         13           1
 F phenylalanine       1.9          8           1
 G glycine            11.7         48           1
 H histidine           5.8         24           2
 I isoleucine          2.2          9           1
 K lysine              2.2          9           2
 L leucine             9.5         39           2
 M methionine          0.7          3           1
 N asparagine          1.5          6           3
 P proline             9.5         39           2
 Q glutamine           4.4         18           2
 R arginine           12.2         50           3
 S serine              9.2         38           2
 T threonine           7.1         29           2
 V valine              4.1         17           2
 W tryptophan          0.7          3           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to pseudoautosomal GTP-binding p... 
GTPBP6                0.260   pseudoautosomal GTP-binding protein-like protein [Hom...
MUPCDH                0.018   mucin and cadherin-like isoform 1 
HRNR                  0.018   hornerin 
LOC729159             0.014   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
CLP1                  0.014   ATP/GTP-binding protein isoform 1 
SYNPO2L               0.014   synaptopodin 2-like isoform a 
LOC100291136          0.013   PREDICTED: hypothetical protein XP_002347630 
LOC100287129          0.013   PREDICTED: hypothetical protein XP_002343480 
LOC729159             0.013   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
PRB1                  0.013   proline-rich protein BstNI subfamily 1 isoform 2 pre...
LOC100292187          0.012   PREDICTED: hypothetical protein 
LOC100292133          0.012   PREDICTED: hypothetical protein 
LOC100289845          0.012   PREDICTED: hypothetical protein XP_002348205 
LOC100294354          0.012   PREDICTED: hypothetical protein 
LOC100289046          0.012   PREDICTED: hypothetical protein XP_002343864 
EPN3                  0.012   epsin 3 
MTIF2                 0.012   mitochondrial translational initiation factor 2 prec...
MTIF2                 0.012   mitochondrial translational initiation factor 2 prec...
SYNJ1                 0.011   synaptojanin 1 isoform c 
C1orf116              0.011   specifically androgen-regulated protein isoform 1 [...
IRS4                  0.011   insulin receptor substrate 4 
LOC100293254          0.011   PREDICTED: hypothetical protein 
LOC100289377          0.011   PREDICTED: hypothetical protein 
LOC100289377          0.011   PREDICTED: hypothetical protein XP_002343119 
OLIG1                 0.011   oligodendrocyte transcription factor 1 
GPR153                0.011   G protein-coupled receptor 153 
LOC100292845          0.010   PREDICTED: hypothetical protein 
LOC100289230          0.010   PREDICTED: hypothetical protein XP_002342600 
ZNF469                0.010   zinc finger protein 469 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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