Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287831 Sequence: fasta or formatted (279aa) NCBI GI: 239746350
Description:

PREDICTED: hypothetical protein XP_002343735

Not currently referenced in the text

Other entries for this name:
alt prot {279aa} PREDICTED: similar to LMARRLC1A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         14           1
 C cysteine            3.9         11           1
 D aspartate           9.0         25           2
 E glutamate           7.9         22           2
 F phenylalanine       2.2          6           1
 G glycine            10.4         29           2
 H histidine           6.1         17           2
 I isoleucine          2.9          8           1
 K lysine              4.3         12           1
 L leucine             3.6         10           2
 M methionine          1.8          5           1
 N asparagine          3.2          9           1
 P proline             6.8         19           1
 Q glutamine           5.7         16           1
 R arginine            5.0         14           1
 S serine              8.2         23           2
 T threonine           3.9         11           1
 V valine              6.5         18           2
 W tryptophan          1.1          3           1
 Y tyrosine            2.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343735 
LOC100287831          0.997   PREDICTED: similar to LMARRLC1A 
LOC100292013          0.991   PREDICTED: similar to LMARRLC1A 
LOC100287311          0.059   PREDICTED: hypothetical protein XP_002343729 
LOC100291688          0.057   PREDICTED: hypothetical protein XP_002345241 
LOC100290054          0.057   PREDICTED: hypothetical protein XP_002348009 
LOC100287338          0.029   PREDICTED: hypothetical protein XP_002343730 
LOC100132713          0.028   PREDICTED: similar to hCG1654128 
LOC100292187          0.026   PREDICTED: hypothetical protein 
LOC100289845          0.026   PREDICTED: hypothetical protein XP_002348205 
LOC100289046          0.026   PREDICTED: hypothetical protein XP_002343864 
LOC100132713          0.024   PREDICTED: similar to hCG1654128 
LOC653203             0.024   PREDICTED: hypothetical protein 
LOC100132713          0.024   PREDICTED: similar to hCG1654128 
LOC727962             0.019   PREDICTED: similar to collagen, type I, alpha 2 [Ho...
HEG1                  0.014   HEG homolog 1 
HRNR                  0.012   hornerin 
LRIG1                 0.012   leucine-rich repeats and immunoglobulin-like domains...
BMP2K                 0.012   BMP-2 inducible kinase isoform a 
ACBD3                 0.012   acyl-Coenzyme A binding domain containing 3 
CCNT2                 0.010   cyclin T2 isoform b 
CCNT2                 0.010   cyclin T2 isoform a 
TNFRSF8               0.009   tumor necrosis factor receptor superfamily, member 8...
VLDLR                 0.009   very low density lipoprotein receptor isoform b [Hom...
VLDLR                 0.009   very low density lipoprotein receptor isoform a [Hom...
SCN4A                 0.009   voltage-gated sodium channel type 4 alpha 
CD177                 0.009   CD177 molecule 
HRC                   0.009   histidine rich calcium binding protein precursor [Hom...
SUPT7L                0.007   SPTF-associated factor 65 gamma 
ILDR2                 0.007   immunoglobulin-like domain containing receptor 2 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press