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Search of human proteins with 239746712
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746712 PREDICTED: hypothetical protein XP_002343817 [Homo
sapiens]
(67 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757704 PREDICTED: hypothetical protein XP_002345526 [Homo ... 151 9e-38
gi|239752189 PREDICTED: hypothetical protein [Homo sapiens] 151 9e-38
gi|239746712 PREDICTED: hypothetical protein XP_002343817 [Homo ... 151 9e-38
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 35 0.010
gi|145701025 multiple EGF-like-domains 8 [Homo sapiens] 33 0.037
gi|157504499 ankyrin repeat domain 47 [Homo sapiens] 33 0.037
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 33 0.037
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 33 0.037
gi|4885509 neuroblastoma, suppression of tumorigenicity 1 2 prec... 33 0.049
gi|115387106 neuroblastoma, suppression of tumorigenicity 1 1 [H... 33 0.049
gi|50080156 hypothetical protein LOC286223 isoform 1 [Homo sapiens] 33 0.049
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 33 0.049
gi|168229174 RNA binding motif protein 27 [Homo sapiens] 33 0.049
gi|38016943 calcium release-activated calcium channel protein 1 ... 33 0.064
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 33 0.064
gi|73476377 LBXCOR1 homolog [Homo sapiens] 32 0.083
gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapi... 32 0.083
gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens] 32 0.11
gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens] 32 0.11
gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens] 32 0.11
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 32 0.11
gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens] 32 0.14
gi|87299628 biorientation of chromosomes in cell division 1-like... 32 0.14
gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1 ... 32 0.14
gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1 ... 32 0.14
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 31 0.18
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ... 31 0.18
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ... 31 0.18
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 31 0.18
gi|8923582 zinc finger protein 446 [Homo sapiens] 31 0.18
>gi|239757704 PREDICTED: hypothetical protein XP_002345526 [Homo
sapiens]
Length = 67
Score = 151 bits (382), Expect = 9e-38
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 1 MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWR 60
MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWR
Sbjct: 1 MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWR 60
Query: 61 LPELRGS 67
LPELRGS
Sbjct: 61 LPELRGS 67
>gi|239752189 PREDICTED: hypothetical protein [Homo sapiens]
Length = 67
Score = 151 bits (382), Expect = 9e-38
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 1 MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWR 60
MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWR
Sbjct: 1 MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWR 60
Query: 61 LPELRGS 67
LPELRGS
Sbjct: 61 LPELRGS 67
>gi|239746712 PREDICTED: hypothetical protein XP_002343817 [Homo
sapiens]
Length = 67
Score = 151 bits (382), Expect = 9e-38
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 1 MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWR 60
MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWR
Sbjct: 1 MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWR 60
Query: 61 LPELRGS 67
LPELRGS
Sbjct: 61 LPELRGS 67
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 35.4 bits (80), Expect = 0.010
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 14 PGPLQKPHPQPHDGGRRPEGPGPGSGDG-DGGGAEQLPP 51
PGP Q P P GG+ P GP PG G G G PP
Sbjct: 196 PGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPP 234
Score = 32.7 bits (73), Expect = 0.064
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 12 QRPGPLQKP-HPQPHDGGRRPEGPGPGS------GDGDGGGAEQLPPQTATTP 57
Q+P P Q P HPQPH + P P S G G G PP +++ P
Sbjct: 80 QQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAP 132
Score = 28.9 bits (63), Expect = 0.92
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 13 RPGPLQKPHPQPHDGGRR--PEGPGPGSGDGDGGGA-EQLPPQTATT 56
+P Q+P P P D + +GPGP G G A PP T T
Sbjct: 92 QPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPT 138
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 27 GGRRPEGPGPGSGDGDGGGAEQ 48
GG+ P G GPG+ G G G E+
Sbjct: 676 GGQGPRGMGPGTPAGYGRGREE 697
>gi|145701025 multiple EGF-like-domains 8 [Homo sapiens]
Length = 2778
Score = 33.5 bits (75), Expect = 0.037
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 2 PQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLP 50
P + H+Q P P P P P DGG R G G+G G GA P
Sbjct: 2450 PDTGVHTVHIQPP-PAPPPPPPPADGGPRGAGDPGGAGASSGPGAPAEP 2497
>gi|157504499 ankyrin repeat domain 47 [Homo sapiens]
Length = 821
Score = 33.5 bits (75), Expect = 0.037
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 26 DGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWRLPE 63
+GG P G GSGD GGG++ P + D R PE
Sbjct: 494 NGGAEPPGSSSGSGDDSGGGSDSGTPGPPSGGDIRDPE 531
>gi|62945417 dystrophia myotonica-containing WD repeat motif
protein [Homo sapiens]
Length = 674
Score = 33.5 bits (75), Expect = 0.037
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 9 GHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWRLPELR 65
G +R GP P P + P GP SG G G A PP P LP +R
Sbjct: 40 GAARRSGPASAQTPVPPQPPQPPPGPASASGPGAAGPASS-PPPAGPGPGPALPAVR 95
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 33.5 bits (75), Expect = 0.037
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 14 PGPLQKPHPQPHDGGRRPEGPGPGSGDGD-----GGGAEQLPPQTATTPDWRLPE 63
P P KP +P GG + +GP P G + GG Q PP P+ + P+
Sbjct: 51 PPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQ 105
Score = 32.7 bits (73), Expect = 0.064
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 13 RPGPLQKPHPQPHDGGRRPEGPGPGSGDGD-----GGGAEQLPPQTATTPDWRLPE 63
RPG KP QP GG + +GP P G + GG Q PP P+ P+
Sbjct: 95 RPG---KPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQ 147
Score = 32.3 bits (72), Expect = 0.083
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Query: 13 RPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
RPG KP P GG +P+GP P G G PPQ P
Sbjct: 221 RPG---KPEGPPSQGGNKPQGPPPHPGKPQGP-----PPQEGNKP 257
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 13 RPGPLQKPHPQPHDGGRRPEGPGPGSGDGD-----GGGAEQLPPQTATTPDWRLPE 63
RPG KP P GG + +GP P G + GG Q PP P+ P+
Sbjct: 137 RPG---KPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQ 189
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 14 PGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLP-PQTATTPDWRLPELRG 66
PG Q P PQ + +RP PG G GG Q P P A P P +G
Sbjct: 243 PGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPPPQG 296
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 13 RPGPLQKPHPQPHDGGRRPEGPGPGSG-----DGDGGGAEQLPPQTATTPDWRLPE 63
RPG KP P GG + +GP P G GG Q PP P P+
Sbjct: 200 RPG---KPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQ 252
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 19 KPHPQPHDGGRRPEGPGPGSGDGD-----GGGAEQLPPQTATTPD 58
KP P GG + +GP P G + GG Q PP P+
Sbjct: 182 KPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPE 226
>gi|4885509 neuroblastoma, suppression of tumorigenicity 1 2
precursor [Homo sapiens]
Length = 180
Score = 33.1 bits (74), Expect = 0.049
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 13 RPGPLQKPHPQPHDGGRRPEGPG-PGSGDGDGGGAE 47
+PG PHP PH GG+ PE PG+ + GAE
Sbjct: 144 QPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAE 179
>gi|115387106 neuroblastoma, suppression of tumorigenicity 1 1 [Homo
sapiens]
Length = 216
Score = 33.1 bits (74), Expect = 0.049
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 13 RPGPLQKPHPQPHDGGRRPEGPG-PGSGDGDGGGAE 47
+PG PHP PH GG+ PE PG+ + GAE
Sbjct: 180 QPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAE 215
>gi|50080156 hypothetical protein LOC286223 isoform 1 [Homo sapiens]
Length = 202
Score = 33.1 bits (74), Expect = 0.049
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 13 RPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
RP Q P +P G RP P PG+G+ D G +L T P
Sbjct: 66 RPAWEQGPKGEPDPRGLRPRKPVPGTGNRDSGTRRRLQDATEQDP 110
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo
sapiens]
Length = 416
Score = 33.1 bits (74), Expect = 0.049
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 14 PGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
P P KP P GG +P+GP P G G PPQ P
Sbjct: 51 PSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQGGNKP 89
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 16 PLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
P KP P GG +P+GP P G G PPQ P
Sbjct: 114 PPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQGGNKP 150
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 16 PLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
P KP P GG +P+GP P G G PPQ P
Sbjct: 176 PPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQGGNKP 212
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 16 PLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
P KP P GG +P+GP P G G PPQ P
Sbjct: 238 PPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQGGNKP 274
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 16 PLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
P KP P GG +P+GP P G G PPQ P
Sbjct: 300 PPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQGGNKP 336
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 14 PGPLQKPHPQPHDGGRRPEGPGP 36
P P KP P GG +P+GP P
Sbjct: 72 PPPPGKPQGPPPQGGNKPQGPPP 94
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 14 PGPLQKPHPQPHDGGRRPEGPGP 36
P P KP P GG +P+GP P
Sbjct: 133 PPPPGKPQGPPPQGGNKPQGPPP 155
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 14 PGPLQKPHPQPHDGGRRPEGPGP 36
P P KP P GG +P+GP P
Sbjct: 195 PPPPGKPQGPPPQGGNKPQGPPP 217
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 14 PGPLQKPHPQPHDGGRRPEGPGP 36
P P KP P GG +P+GP P
Sbjct: 257 PPPPGKPQGPPPQGGNKPQGPPP 279
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 14 PGPLQKPHPQPHDGGRRPEGPGP 36
P P KP P GG +P+GP P
Sbjct: 319 PPPPGKPQGPPPQGGNKPQGPPP 341
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 20 PHPQPHDGGRRPEGP--GPGSGDG---DGGGAEQLPPQTATTPDWRLPE 63
P P GG +P+GP PG G GG Q PP P P+
Sbjct: 36 PQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 84
>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
Length = 1060
Score = 33.1 bits (74), Expect = 0.049
Identities = 17/39 (43%), Positives = 17/39 (43%)
Query: 14 PGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQ 52
PG L P P P G GPGPG G G G PQ
Sbjct: 329 PGMLMPPMPGPGPGPGPGPGPGPGPGPGPGHSMRLPVPQ 367
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/32 (43%), Positives = 14/32 (43%)
Query: 14 PGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGG 45
P P P P G P PGPG G G G G
Sbjct: 317 PPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPG 348
>gi|38016943 calcium release-activated calcium channel protein 1
[Homo sapiens]
Length = 301
Score = 32.7 bits (73), Expect = 0.064
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 13/53 (24%)
Query: 20 PHPQPHDGGRRPEGPGPG-------------SGDGDGGGAEQLPPQTATTPDW 59
P P P PE P G SGDG+ GA PP T PDW
Sbjct: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYPDW 55
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 32.7 bits (73), Expect = 0.064
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 14 PGPLQKPHPQPHDGGRRPEGPGPGSGDGD-GGGAEQLPP 51
P L +P P GG EG G G G G+ GGA Q PP
Sbjct: 154 PSKLGEPPPLGEGGGGGGEGGGAGGGSGEREGGAPQPPP 192
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 32.3 bits (72), Expect = 0.083
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 2 PQRRLRLGHLQRPGPLQKPHPQPHDG-GRRPEGPGPGSGDGDGGGA 46
P + LR G + GP P P P G G GP G GGGA
Sbjct: 278 PHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGA 323
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/72 (33%), Positives = 26/72 (36%), Gaps = 23/72 (31%)
Query: 9 GHLQRPGPLQKPHP--------------QPHDGGRRPEG-PGPGSGDGDGG--------G 45
G LQ+ P PHP P G P+G PG GSG G G G
Sbjct: 339 GLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPG 398
Query: 46 AEQLPPQTATTP 57
A LPP P
Sbjct: 399 ASHLPPGAGAGP 410
>gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapiens]
Length = 1343
Score = 32.3 bits (72), Expect = 0.083
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 22 PQPHDGGRRP--EGPGPGSGDGDGGGAEQLPP 51
PQ G +RP GPG GSG G GGG PP
Sbjct: 1035 PQITIGPQRPAPSGPGGGSGGGSGGGGGGQPP 1066
Score = 27.7 bits (60), Expect = 2.0
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 14/78 (17%)
Query: 4 RRLRLGHLQRPGP-----LQKPHP-----QPHDGGRRPEGPGPGSGDGDGGGAEQLPP-- 51
++L + Q+P P LQ P P +P EG GSG GGG L P
Sbjct: 1074 QQLTVSAAQKPRPSSGNLLQSPEPSYGPARPRQQSLSKEGSIGGSGGSGGGGGGGLKPSI 1133
Query: 52 --QTATTPDWRLPELRGS 67
Q + TP P + S
Sbjct: 1134 TKQHSQTPSTLNPTMPAS 1151
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
Query: 1 MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGG 45
+P ++LR+ PL +P H +GPGP G G GGG
Sbjct: 916 VPAQQLRI-------PLSFQNPLFHMAA---DGPGPPGGHGGGGG 950
>gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens]
Length = 178
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 8 LGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGD 42
LG +R P P P PH RP G GPG G G+
Sbjct: 103 LGPRER-SPALSPTPLPHADPARPPGSGPGRGHGE 136
>gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens]
Length = 178
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 8 LGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGD 42
LG +R P P P PH RP G GPG G G+
Sbjct: 103 LGPRER-SPALSPTPLPHADPARPPGSGPGRGHGE 136
>gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens]
Length = 178
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 8 LGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGD 42
LG +R P P P PH RP G GPG G G+
Sbjct: 103 LGPRER-SPALSPTPLPHADPARPPGSGPGRGHGE 136
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 32.0 bits (71), Expect = 0.11
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 3 QRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGG 45
+RR +L L G P P P PE P PGSG G G G
Sbjct: 741 RRRRKLYELHAAGA---PPPPPPGHAPAPESPRPGSGSGSGPG 780
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 14 PGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGA 46
PGP + P QP + PGPG+ + GGA
Sbjct: 619 PGPARAPPGQPAEPDAPRSSPGPGAREEGAGGA 651
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 14 PGPLQKPHPQ---PHDG-GRRPEGPGPGSGDGDGGGAEQLPPQTA 54
P P P P P DG G P+ P PG E +PP A
Sbjct: 904 PAPAASPQPGSRGPRDGLGPEPQEPPPGPPPSPAAAPEAVPPPPA 948
>gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens]
Length = 832
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 27 GGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
GG P G G G+G G G GA LPPQ A P
Sbjct: 5 GGAGPGGCGAGAGAGAGPGA--LPPQPAALP 33
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 14 PGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGA 46
P P +P PQP P GPG G G G GGA
Sbjct: 15 PPPPPQPQPQPPPP---PPGPGAGPGAGGAGGA 44
>gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1
[Homo sapiens]
Length = 1288
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/33 (48%), Positives = 16/33 (48%)
Query: 23 QPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTAT 55
QP RR EGP P S DG AE PP T
Sbjct: 7 QPSTARRREEGPPPPSPDGASSDAEPEPPSGRT 39
>gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1
[Homo sapiens]
Length = 1288
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/33 (48%), Positives = 16/33 (48%)
Query: 23 QPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTAT 55
QP RR EGP P S DG AE PP T
Sbjct: 7 QPSTARRREEGPPPPSPDGASSDAEPEPPSGRT 39
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 31.2 bits (69), Expect = 0.18
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 14 PGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLP 50
PG +P PQ H G + P GP PG GG E P
Sbjct: 365 PGQRGEPGPQGHAGAQGPPGP-PGINGSPGGKGEMGP 400
>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
sapiens]
Length = 304
Score = 31.2 bits (69), Expect = 0.18
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 9 GHLQRPGPLQKPHPQPHD--------GGRRPEGPGPGSGDGDGGGAEQLPPQ 52
G R P P P+P GG R E P G G GGA+++PP+
Sbjct: 202 GRRTRASPPTPPRPRPPGLRSGDVPRGGARVERPTGRRGAGGRGGAQRIPPR 253
>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
sapiens]
Length = 304
Score = 31.2 bits (69), Expect = 0.18
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 9 GHLQRPGPLQKPHPQPHD--------GGRRPEGPGPGSGDGDGGGAEQLPPQ 52
G R P P P+P GG R E P G G GGA+++PP+
Sbjct: 202 GRRTRASPPTPPRPRPPGLRSGDVPRGGARVERPTGRRGAGGRGGAQRIPPR 253
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 31.2 bits (69), Expect = 0.18
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 14 PGPLQKPHPQPHDGGRRPEGPGPGS------GDGDGGGAEQLPP 51
P P KP P GG++P+GP P GD + Q PP
Sbjct: 173 PPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPP 216
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 16 PLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
P KP P GG +P+GP P G G PPQ P
Sbjct: 93 PPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQGGNRP 129
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 16 PLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
P KP P GG +P+GP P G G PPQ P
Sbjct: 215 PPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQGGNKP 251
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 16 PLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
P KP P GG +P+GP P G G PPQ P
Sbjct: 154 PPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQGGKKP 190
Score = 29.6 bits (65), Expect = 0.54
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 14 PGPLQKPHPQPHDGGRRPEGPGP 36
P P KP P GG RP+GP P
Sbjct: 112 PPPPGKPQGPPPQGGNRPQGPPP 134
Score = 28.9 bits (63), Expect = 0.92
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 14 PGPLQKPHPQPHDGGRRPEGP-------GPGSGDGDGGGAEQLPP 51
P P KP P GG +P+GP GP + G + + PP
Sbjct: 234 PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPP 278
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 14 PGPLQKPHPQPHDGGRRPEGPGP 36
P P KP P GG +P+GP P
Sbjct: 51 PPPPGKPQGPPPQGGNKPQGPPP 73
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 15 GPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
G Q P PQ GG +P+GP P G G PPQ P
Sbjct: 34 GNPQGPSPQ---GGNKPQGPPPPPGKPQGP-----PPQGGNKP 68
>gi|8923582 zinc finger protein 446 [Homo sapiens]
Length = 450
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 4 RRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
R LR G+ + GP P QP P+GPGP + +G G A P TP
Sbjct: 263 RSLRSGN-ESEGPPGCPEAQP------PQGPGPAAWEGLSGAATPAPTVRPGTP 309
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.143 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,082,485
Number of Sequences: 37866
Number of extensions: 372057
Number of successful extensions: 3915
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 186
Number of HSP's that attempted gapping in prelim test: 2835
Number of HSP's gapped (non-prelim): 1055
length of query: 67
length of database: 18,247,518
effective HSP length: 40
effective length of query: 27
effective length of database: 16,732,878
effective search space: 451787706
effective search space used: 451787706
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.