Guide to the Human Genome
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Search of human proteins with 239746712

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746712 PREDICTED: hypothetical protein XP_002343817 [Homo
sapiens]
         (67 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757704 PREDICTED: hypothetical protein XP_002345526 [Homo ...   151   9e-38
gi|239752189 PREDICTED: hypothetical protein [Homo sapiens]           151   9e-38
gi|239746712 PREDICTED: hypothetical protein XP_002343817 [Homo ...   151   9e-38
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    35   0.010
gi|145701025 multiple EGF-like-domains 8 [Homo sapiens]                33   0.037
gi|157504499 ankyrin repeat domain 47 [Homo sapiens]                   33   0.037
gi|62945417 dystrophia myotonica-containing WD repeat motif prot...    33   0.037
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H...    33   0.037
gi|4885509 neuroblastoma, suppression of tumorigenicity 1 2 prec...    33   0.049
gi|115387106 neuroblastoma, suppression of tumorigenicity 1 1 [H...    33   0.049
gi|50080156 hypothetical protein LOC286223 isoform 1 [Homo sapiens]    33   0.049
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]     33   0.049
gi|168229174 RNA binding motif protein 27 [Homo sapiens]               33   0.049
gi|38016943 calcium release-activated calcium channel protein 1 ...    33   0.064
gi|59806361 hypothetical protein LOC387104 [Homo sapiens]              33   0.064
gi|73476377 LBXCOR1 homolog [Homo sapiens]                             32   0.083
gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapi...    32   0.083
gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens]           32   0.11 
gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens]           32   0.11 
gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens]           32   0.11 
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]           32   0.11 
gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens]              32   0.14 
gi|87299628 biorientation of chromosomes in cell division 1-like...    32   0.14 
gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1 ...    32   0.14 
gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1 ...    32   0.14 
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      31   0.18 
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ...    31   0.18 
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ...    31   0.18 
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre...    31   0.18 
gi|8923582 zinc finger protein 446 [Homo sapiens]                      31   0.18 

>gi|239757704 PREDICTED: hypothetical protein XP_002345526 [Homo
          sapiens]
          Length = 67

 Score =  151 bits (382), Expect = 9e-38
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWR 60
          MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWR
Sbjct: 1  MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWR 60

Query: 61 LPELRGS 67
          LPELRGS
Sbjct: 61 LPELRGS 67


>gi|239752189 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 67

 Score =  151 bits (382), Expect = 9e-38
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWR 60
          MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWR
Sbjct: 1  MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWR 60

Query: 61 LPELRGS 67
          LPELRGS
Sbjct: 61 LPELRGS 67


>gi|239746712 PREDICTED: hypothetical protein XP_002343817 [Homo
          sapiens]
          Length = 67

 Score =  151 bits (382), Expect = 9e-38
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWR 60
          MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWR
Sbjct: 1  MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWR 60

Query: 61 LPELRGS 67
          LPELRGS
Sbjct: 61 LPELRGS 67


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 14  PGPLQKPHPQPHDGGRRPEGPGPGSGDG-DGGGAEQLPP 51
           PGP Q P P    GG+ P GP PG G G    G    PP
Sbjct: 196 PGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPP 234



 Score = 32.7 bits (73), Expect = 0.064
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 12  QRPGPLQKP-HPQPHDGGRRPEGPGPGS------GDGDGGGAEQLPPQTATTP 57
           Q+P P Q P HPQPH   + P  P   S      G G   G    PP +++ P
Sbjct: 80  QQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAP 132



 Score = 28.9 bits (63), Expect = 0.92
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 13  RPGPLQKPHPQPHDGGRR--PEGPGPGSGDGDGGGA-EQLPPQTATT 56
           +P   Q+P P P D  +    +GPGP  G G    A    PP T  T
Sbjct: 92  QPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPT 138



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 27  GGRRPEGPGPGSGDGDGGGAEQ 48
           GG+ P G GPG+  G G G E+
Sbjct: 676 GGQGPRGMGPGTPAGYGRGREE 697


>gi|145701025 multiple EGF-like-domains 8 [Homo sapiens]
          Length = 2778

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 2    PQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLP 50
            P   +   H+Q P P   P P P DGG R  G   G+G   G GA   P
Sbjct: 2450 PDTGVHTVHIQPP-PAPPPPPPPADGGPRGAGDPGGAGASSGPGAPAEP 2497


>gi|157504499 ankyrin repeat domain 47 [Homo sapiens]
          Length = 821

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 26  DGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWRLPE 63
           +GG  P G   GSGD  GGG++   P   +  D R PE
Sbjct: 494 NGGAEPPGSSSGSGDDSGGGSDSGTPGPPSGGDIRDPE 531


>gi|62945417 dystrophia myotonica-containing WD repeat motif
          protein [Homo sapiens]
          Length = 674

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 9  GHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTPDWRLPELR 65
          G  +R GP     P P    + P GP   SG G  G A   PP     P   LP +R
Sbjct: 40 GAARRSGPASAQTPVPPQPPQPPPGPASASGPGAAGPASS-PPPAGPGPGPALPAVR 95


>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
           sapiens]
          Length = 309

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 14  PGPLQKPHPQPHDGGRRPEGPGPGSGDGD-----GGGAEQLPPQTATTPDWRLPE 63
           P P  KP  +P  GG + +GP P  G  +     GG   Q PP     P+ + P+
Sbjct: 51  PPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQ 105



 Score = 32.7 bits (73), Expect = 0.064
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 8/56 (14%)

Query: 13  RPGPLQKPHPQPHDGGRRPEGPGPGSGDGD-----GGGAEQLPPQTATTPDWRLPE 63
           RPG   KP  QP  GG + +GP P  G  +     GG   Q PP     P+   P+
Sbjct: 95  RPG---KPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQ 147



 Score = 32.3 bits (72), Expect = 0.083
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 8/45 (17%)

Query: 13  RPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
           RPG   KP   P  GG +P+GP P  G   G      PPQ    P
Sbjct: 221 RPG---KPEGPPSQGGNKPQGPPPHPGKPQGP-----PPQEGNKP 257



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 8/56 (14%)

Query: 13  RPGPLQKPHPQPHDGGRRPEGPGPGSGDGD-----GGGAEQLPPQTATTPDWRLPE 63
           RPG   KP   P  GG + +GP P  G  +     GG   Q PP     P+   P+
Sbjct: 137 RPG---KPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQ 189



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 14  PGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLP-PQTATTPDWRLPELRG 66
           PG  Q P PQ  +  +RP  PG   G    GG  Q P P  A  P    P  +G
Sbjct: 243 PGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPPPQG 296



 Score = 28.9 bits (63), Expect = 0.92
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 13  RPGPLQKPHPQPHDGGRRPEGPGPGSG-----DGDGGGAEQLPPQTATTPDWRLPE 63
           RPG   KP   P  GG + +GP P  G        GG   Q PP     P    P+
Sbjct: 200 RPG---KPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQ 252



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 5/45 (11%)

Query: 19  KPHPQPHDGGRRPEGPGPGSGDGD-----GGGAEQLPPQTATTPD 58
           KP   P  GG + +GP P  G  +     GG   Q PP     P+
Sbjct: 182 KPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPE 226


>gi|4885509 neuroblastoma, suppression of tumorigenicity 1 2
           precursor [Homo sapiens]
          Length = 180

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 13  RPGPLQKPHPQPHDGGRRPEGPG-PGSGDGDGGGAE 47
           +PG    PHP PH GG+ PE    PG+   +  GAE
Sbjct: 144 QPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAE 179


>gi|115387106 neuroblastoma, suppression of tumorigenicity 1 1 [Homo
           sapiens]
          Length = 216

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 13  RPGPLQKPHPQPHDGGRRPEGPG-PGSGDGDGGGAE 47
           +PG    PHP PH GG+ PE    PG+   +  GAE
Sbjct: 180 QPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAE 215


>gi|50080156 hypothetical protein LOC286223 isoform 1 [Homo sapiens]
          Length = 202

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 17/45 (37%), Positives = 21/45 (46%)

Query: 13  RPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
           RP   Q P  +P   G RP  P PG+G+ D G   +L   T   P
Sbjct: 66  RPAWEQGPKGEPDPRGLRPRKPVPGTGNRDSGTRRRLQDATEQDP 110


>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo
          sapiens]
          Length = 416

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 14 PGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
          P P  KP   P  GG +P+GP P  G   G      PPQ    P
Sbjct: 51 PSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQGGNKP 89



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 5/42 (11%)

Query: 16  PLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
           P  KP   P  GG +P+GP P  G   G      PPQ    P
Sbjct: 114 PPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQGGNKP 150



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 5/42 (11%)

Query: 16  PLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
           P  KP   P  GG +P+GP P  G   G      PPQ    P
Sbjct: 176 PPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQGGNKP 212



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 5/42 (11%)

Query: 16  PLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
           P  KP   P  GG +P+GP P  G   G      PPQ    P
Sbjct: 238 PPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQGGNKP 274



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 5/42 (11%)

Query: 16  PLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
           P  KP   P  GG +P+GP P  G   G      PPQ    P
Sbjct: 300 PPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQGGNKP 336



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 14 PGPLQKPHPQPHDGGRRPEGPGP 36
          P P  KP   P  GG +P+GP P
Sbjct: 72 PPPPGKPQGPPPQGGNKPQGPPP 94



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 14  PGPLQKPHPQPHDGGRRPEGPGP 36
           P P  KP   P  GG +P+GP P
Sbjct: 133 PPPPGKPQGPPPQGGNKPQGPPP 155



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 14  PGPLQKPHPQPHDGGRRPEGPGP 36
           P P  KP   P  GG +P+GP P
Sbjct: 195 PPPPGKPQGPPPQGGNKPQGPPP 217



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 14  PGPLQKPHPQPHDGGRRPEGPGP 36
           P P  KP   P  GG +P+GP P
Sbjct: 257 PPPPGKPQGPPPQGGNKPQGPPP 279



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 14  PGPLQKPHPQPHDGGRRPEGPGP 36
           P P  KP   P  GG +P+GP P
Sbjct: 319 PPPPGKPQGPPPQGGNKPQGPPP 341



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 20 PHPQPHDGGRRPEGP--GPGSGDG---DGGGAEQLPPQTATTPDWRLPE 63
          P   P  GG +P+GP   PG   G    GG   Q PP     P    P+
Sbjct: 36 PQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 84


>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
          Length = 1060

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 17/39 (43%), Positives = 17/39 (43%)

Query: 14  PGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQ 52
           PG L  P P P  G     GPGPG G G G       PQ
Sbjct: 329 PGMLMPPMPGPGPGPGPGPGPGPGPGPGPGHSMRLPVPQ 367



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/32 (43%), Positives = 14/32 (43%)

Query: 14  PGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGG 45
           P P     P P  G   P  PGPG G G G G
Sbjct: 317 PPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPG 348


>gi|38016943 calcium release-activated calcium channel protein 1
          [Homo sapiens]
          Length = 301

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 13/53 (24%)

Query: 20 PHPQPHDGGRRPEGPGPG-------------SGDGDGGGAEQLPPQTATTPDW 59
          P P P      PE P  G             SGDG+  GA   PP   T PDW
Sbjct: 3  PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYPDW 55


>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
          Length = 947

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 14  PGPLQKPHPQPHDGGRRPEGPGPGSGDGD-GGGAEQLPP 51
           P  L +P P    GG   EG G G G G+  GGA Q PP
Sbjct: 154 PSKLGEPPPLGEGGGGGGEGGGAGGGSGEREGGAPQPPP 192


>gi|73476377 LBXCOR1 homolog [Homo sapiens]
          Length = 921

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 2   PQRRLRLGHLQRPGPLQKPHPQPHDG-GRRPEGPGPGSGDGDGGGA 46
           P + LR G  +  GP   P P P  G G      GP    G GGGA
Sbjct: 278 PHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGA 323



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 24/72 (33%), Positives = 26/72 (36%), Gaps = 23/72 (31%)

Query: 9   GHLQRPGPLQKPHP--------------QPHDGGRRPEG-PGPGSGDGDGG--------G 45
           G LQ+  P   PHP               P  G   P+G PG GSG G  G        G
Sbjct: 339 GLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPG 398

Query: 46  AEQLPPQTATTP 57
           A  LPP     P
Sbjct: 399 ASHLPPGAGAGP 410


>gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapiens]
          Length = 1343

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 22   PQPHDGGRRP--EGPGPGSGDGDGGGAEQLPP 51
            PQ   G +RP   GPG GSG G GGG    PP
Sbjct: 1035 PQITIGPQRPAPSGPGGGSGGGSGGGGGGQPP 1066



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 14/78 (17%)

Query: 4    RRLRLGHLQRPGP-----LQKPHP-----QPHDGGRRPEGPGPGSGDGDGGGAEQLPP-- 51
            ++L +   Q+P P     LQ P P     +P       EG   GSG   GGG   L P  
Sbjct: 1074 QQLTVSAAQKPRPSSGNLLQSPEPSYGPARPRQQSLSKEGSIGGSGGSGGGGGGGLKPSI 1133

Query: 52   --QTATTPDWRLPELRGS 67
              Q + TP    P +  S
Sbjct: 1134 TKQHSQTPSTLNPTMPAS 1151



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 10/45 (22%)

Query: 1   MPQRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGG 45
           +P ++LR+       PL   +P  H      +GPGP  G G GGG
Sbjct: 916 VPAQQLRI-------PLSFQNPLFHMAA---DGPGPPGGHGGGGG 950


>gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens]
          Length = 178

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 8   LGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGD 42
           LG  +R  P   P P PH    RP G GPG G G+
Sbjct: 103 LGPRER-SPALSPTPLPHADPARPPGSGPGRGHGE 136


>gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens]
          Length = 178

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 8   LGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGD 42
           LG  +R  P   P P PH    RP G GPG G G+
Sbjct: 103 LGPRER-SPALSPTPLPHADPARPPGSGPGRGHGE 136


>gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens]
          Length = 178

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 8   LGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGD 42
           LG  +R  P   P P PH    RP G GPG G G+
Sbjct: 103 LGPRER-SPALSPTPLPHADPARPPGSGPGRGHGE 136


>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
          Length = 1006

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 3   QRRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGG 45
           +RR +L  L   G    P P P      PE P PGSG G G G
Sbjct: 741 RRRRKLYELHAAGA---PPPPPPGHAPAPESPRPGSGSGSGPG 780



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 14  PGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGA 46
           PGP + P  QP +       PGPG+ +   GGA
Sbjct: 619 PGPARAPPGQPAEPDAPRSSPGPGAREEGAGGA 651



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 4/45 (8%)

Query: 14  PGPLQKPHPQ---PHDG-GRRPEGPGPGSGDGDGGGAEQLPPQTA 54
           P P   P P    P DG G  P+ P PG         E +PP  A
Sbjct: 904 PAPAASPQPGSRGPRDGLGPEPQEPPPGPPPSPAAAPEAVPPPPA 948


>gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens]
          Length = 832

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 27 GGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
          GG  P G G G+G G G GA  LPPQ A  P
Sbjct: 5  GGAGPGGCGAGAGAGAGPGA--LPPQPAALP 33


>gi|87299628 biorientation of chromosomes in cell division 1-like
          [Homo sapiens]
          Length = 3051

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 14 PGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGA 46
          P P  +P PQP      P GPG G G G  GGA
Sbjct: 15 PPPPPQPQPQPPPP---PPGPGAGPGAGGAGGA 44


>gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1
          [Homo sapiens]
          Length = 1288

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 16/33 (48%), Positives = 16/33 (48%)

Query: 23 QPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTAT 55
          QP    RR EGP P S DG    AE  PP   T
Sbjct: 7  QPSTARRREEGPPPPSPDGASSDAEPEPPSGRT 39


>gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1
          [Homo sapiens]
          Length = 1288

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 16/33 (48%), Positives = 16/33 (48%)

Query: 23 QPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTAT 55
          QP    RR EGP P S DG    AE  PP   T
Sbjct: 7  QPSTARRREEGPPPPSPDGASSDAEPEPPSGRT 39


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 14  PGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLP 50
           PG   +P PQ H G + P GP PG     GG  E  P
Sbjct: 365 PGQRGEPGPQGHAGAQGPPGP-PGINGSPGGKGEMGP 400


>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
           sapiens]
          Length = 304

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 8/52 (15%)

Query: 9   GHLQRPGPLQKPHPQPHD--------GGRRPEGPGPGSGDGDGGGAEQLPPQ 52
           G   R  P   P P+P          GG R E P    G G  GGA+++PP+
Sbjct: 202 GRRTRASPPTPPRPRPPGLRSGDVPRGGARVERPTGRRGAGGRGGAQRIPPR 253


>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
           sapiens]
          Length = 304

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 8/52 (15%)

Query: 9   GHLQRPGPLQKPHPQPHD--------GGRRPEGPGPGSGDGDGGGAEQLPPQ 52
           G   R  P   P P+P          GG R E P    G G  GGA+++PP+
Sbjct: 202 GRRTRASPPTPPRPRPPGLRSGDVPRGGARVERPTGRRGAGGRGGAQRIPPR 253


>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
           preproprotein [Homo sapiens]
          Length = 331

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 14  PGPLQKPHPQPHDGGRRPEGPGPGS------GDGDGGGAEQLPP 51
           P P  KP   P  GG++P+GP P          GD   + Q PP
Sbjct: 173 PPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPP 216



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 5/42 (11%)

Query: 16  PLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
           P  KP   P  GG +P+GP P  G   G      PPQ    P
Sbjct: 93  PPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQGGNRP 129



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 5/42 (11%)

Query: 16  PLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
           P  KP   P  GG +P+GP P  G   G      PPQ    P
Sbjct: 215 PPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQGGNKP 251



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 5/42 (11%)

Query: 16  PLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
           P  KP   P  GG +P+GP P  G   G      PPQ    P
Sbjct: 154 PPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQGGKKP 190



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 14  PGPLQKPHPQPHDGGRRPEGPGP 36
           P P  KP   P  GG RP+GP P
Sbjct: 112 PPPPGKPQGPPPQGGNRPQGPPP 134



 Score = 28.9 bits (63), Expect = 0.92
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 7/45 (15%)

Query: 14  PGPLQKPHPQPHDGGRRPEGP-------GPGSGDGDGGGAEQLPP 51
           P P  KP   P  GG +P+GP       GP +  G    + + PP
Sbjct: 234 PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPP 278



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 14 PGPLQKPHPQPHDGGRRPEGPGP 36
          P P  KP   P  GG +P+GP P
Sbjct: 51 PPPPGKPQGPPPQGGNKPQGPPP 73



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 8/43 (18%)

Query: 15 GPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
          G  Q P PQ   GG +P+GP P  G   G      PPQ    P
Sbjct: 34 GNPQGPSPQ---GGNKPQGPPPPPGKPQGP-----PPQGGNKP 68


>gi|8923582 zinc finger protein 446 [Homo sapiens]
          Length = 450

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 4   RRLRLGHLQRPGPLQKPHPQPHDGGRRPEGPGPGSGDGDGGGAEQLPPQTATTP 57
           R LR G+ +  GP   P  QP      P+GPGP + +G  G A   P     TP
Sbjct: 263 RSLRSGN-ESEGPPGCPEAQP------PQGPGPAAWEGLSGAATPAPTVRPGTP 309


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.143    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,082,485
Number of Sequences: 37866
Number of extensions: 372057
Number of successful extensions: 3915
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 186
Number of HSP's that attempted gapping in prelim test: 2835
Number of HSP's gapped (non-prelim): 1055
length of query: 67
length of database: 18,247,518
effective HSP length: 40
effective length of query: 27
effective length of database: 16,732,878
effective search space: 451787706
effective search space used: 451787706
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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