Guide to the Human Genome
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Name: LOC100132515 Sequence: fasta or formatted (178aa) NCBI GI: 239756609
Description:

PREDICTED: similar to hCG2045429

Not currently referenced in the text

Other entries for this name:
alt mRNA {178aa} PREDICTED: similar to hCG2045429
alt mRNA {178aa} PREDICTED: similar to hCG2045429
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.6         26           4
 C cysteine            3.4          6           1
 D aspartate           1.1          2           1
 E glutamate           7.9         14           2
 F phenylalanine       0.6          1           1
 G glycine            11.2         20           2
 H histidine           4.5          8           1
 I isoleucine          0.0          0           0
 K lysine              2.2          4           1
 L leucine             6.2         11           2
 M methionine          0.6          1           1
 N asparagine          0.0          0           0
 P proline            10.7         19           2
 Q glutamine           2.2          4           2
 R arginine           12.9         23           3
 S serine             13.5         24           2
 T threonine           5.1          9           1
 V valine              1.7          3           1
 W tryptophan          1.1          2           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2045429 
LOC100132515          1.000   PREDICTED: similar to hCG2045429 
LOC100132515          1.000   PREDICTED: similar to hCG2045429 
BRSK1                 0.058   BR serine/threonine kinase 1 
LOC100293980          0.046   PREDICTED: hypothetical protein 
LOC100290741          0.043   PREDICTED: hypothetical protein XP_002346521 
LOC100288445          0.043   PREDICTED: hypothetical protein XP_002342359 
HRNR                  0.041   hornerin 
FLJ22184              0.041   PREDICTED: hypothetical protein LOC80164 
SFRS8                 0.038   splicing factor, arginine/serine-rich 8 
C10orf95              0.038   hypothetical protein LOC79946 
TMC2                  0.035   transmembrane cochlear-expressed protein 2 
THRAP3                0.035   thyroid hormone receptor associated protein 3 [Homo...
GLI2                  0.035   GLI-Kruppel family member GLI2 
ATN1                  0.035   atrophin-1 
ATN1                  0.035   atrophin-1 
LOC100132345          0.032   PREDICTED: hypothetical protein 
HDGF2                 0.032   hepatoma-derived growth factor-related protein 2 iso...
HDGF2                 0.032   hepatoma-derived growth factor-related protein 2 iso...
SMARCA4               0.032   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.032   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.032   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.032   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.032   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.032   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.032   SWI/SNF-related matrix-associated actin-dependent re...
LOC729986             0.032   PREDICTED: hypothetical protein 
LOC100292845          0.032   PREDICTED: hypothetical protein 
LOC100293486          0.032   PREDICTED: similar to hCG2041452 
LOC729986             0.032   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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