Guide to the Human Genome
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Name: NBL1 Sequence: fasta or formatted (216aa) NCBI GI: 115387106
Description:

neuroblastoma, suppression of tumorigenicity 1 1

Referenced in:

TGF-beta Family

Other entries for this name:
alt prot [180aa] neuroblastoma, suppression of tumorigenicity 1 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         17           2
 C cysteine            4.6         10           1
 D aspartate           2.8          6           1
 E glutamate           8.3         18           3
 F phenylalanine       1.9          4           1
 G glycine             8.8         19           2
 H histidine           6.0         13           1
 I isoleucine          3.2          7           1
 K lysine              4.6         10           1
 L leucine             7.4         16           2
 M methionine          3.2          7           2
 N asparagine          2.3          5           1
 P proline            11.6         25           3
 Q glutamine           4.6         10           1
 R arginine            2.3          5           1
 S serine              7.4         16           1
 T threonine           4.6         10           1
 V valine              6.0         13           1
 W tryptophan          1.4          3           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neuroblastoma, suppression of tumorigenicity 1 1 [H... 
NBL1                  0.834   neuroblastoma, suppression of tumorigenicity 1 2 prec...
GREM2                 0.107   gremlin 2 precursor 
GREM1                 0.086   gremlin-1 precursor 
DAND5                 0.066   dante precursor 
CER1                  0.057   cerberus 1 
PHLDA1                0.048   pleckstrin homology-like domain, family A, member 1 ...
FOXL2                 0.032   forkhead box L2 
SASH1                 0.030   SAM and SH3 domain containing 1 
SNX26                 0.027   sorting nexin 26 
POU3F2                0.025   POU domain, class 3, transcription factor 2 
A2BP1                 0.023   ataxin 2-binding protein 1 isoform 4 
A2BP1                 0.023   ataxin 2-binding protein 1 isoform 5 
A2BP1                 0.023   ataxin 2-binding protein 1 isoform 3 
A2BP1                 0.023   ataxin 2-binding protein 1 isoform 2 
A2BP1                 0.023   ataxin 2-binding protein 1 isoform 1 
A2BP1                 0.023   ataxin 2-binding protein 1 isoform 4 
HOXA4                 0.023   homeobox A4 
MAMLD1                0.023   mastermind-like domain containing 1 
SCRIB                 0.023   scribble isoform b 
SCRIB                 0.023   scribble isoform a 
HCN2                  0.020   hyperpolarization activated cyclic nucleotide-gated...
CRTC1                 0.020   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.020   mucoepidermoid carcinoma translocated 1 isoform 1 [...
FOXB2                 0.020   forkhead box B2 
SF3B4                 0.018   splicing factor 3b, subunit 4 
SSBP3                 0.018   single stranded DNA binding protein 3 isoform b [Hom...
LOC100291817          0.018   PREDICTED: hypothetical protein XP_002345526 
LOC100288574          0.018   PREDICTED: hypothetical protein 
LOC100290372          0.018   PREDICTED: hypothetical protein XP_002346788 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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