Guide to the Human Genome
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Name: LOC100291817 Sequence: fasta or formatted (67aa) NCBI GI: 239757704
Description:

PREDICTED: hypothetical protein XP_002345526

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0          2           1
 C cysteine            0.0          0           0
 D aspartate           6.0          4           1
 E glutamate           4.5          3           1
 F phenylalanine       0.0          0           0
 G glycine            19.4         13           3
 H histidine           4.5          3           1
 I isoleucine          0.0          0           0
 K lysine              1.5          1           1
 L leucine            10.4          7           1
 M methionine          1.5          1           1
 N asparagine          0.0          0           0
 P proline            19.4         13           2
 Q glutamine           9.0          6           1
 R arginine           11.9          8           2
 S serine              3.0          2           1
 T threonine           4.5          3           2
 V valine              0.0          0           0
 W tryptophan          1.5          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345526 
LOC100288574          1.000   PREDICTED: hypothetical protein 
LOC100288574          1.000   PREDICTED: hypothetical protein XP_002343817 
SFPQ                  0.079   splicing factor proline/glutamine rich (polypyrimidin...
MEGF8                 0.063   multiple EGF-like-domains 8 
KANK3                 0.063   ankyrin repeat domain 47 
DMWD                  0.063   dystrophia myotonica-containing WD repeat motif prot...
PRB3                  0.063   proline-rich protein BstNI subfamily 3 precursor [H...
NBL1                  0.063   neuroblastoma, suppression of tumorigenicity 1 2 prec...
NBL1                  0.063   neuroblastoma, suppression of tumorigenicity 1 1 [H...
C9orf47               0.063   hypothetical protein LOC286223 isoform 1 
PRB2                  0.063   proline-rich protein BstNI subfamily 2 
RBM27                 0.063   RNA binding motif protein 27 
ORAI1                 0.063   calcium release-activated calcium channel protein 1 ...
C6orf174              0.063   hypothetical protein LOC387104 
LBXCOR1               0.056   LBXCOR1 homolog 
SYNGAP1               0.056   synaptic Ras GTPase activating protein 1 
LOC100132515          0.056   PREDICTED: similar to hCG2045429 
LOC100132515          0.056   PREDICTED: similar to hCG2045429 
LOC100132515          0.056   PREDICTED: similar to hCG2045429 
ZFPM1                 0.056   zinc finger protein, multitype 1 
KAT2B                 0.056   K(lysine) acetyltransferase 2B 
BOD1L                 0.056   biorientation of chromosomes in cell division 1-like...
SMC4                  0.056   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC4                  0.056   SMC4 structural maintenance of chromosomes 4-like 1 ...
COL3A1                0.048   collagen type III alpha 1 preproprotein 
LOC100290812          0.048   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.048   PREDICTED: hypothetical protein XP_002343496 
PRB1                  0.048   proline-rich protein BstNI subfamily 1 isoform 1 pre...
ZNF446                0.048   zinc finger protein 446 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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