Guide to the Human Genome
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Name: NBL1 Sequence: fasta or formatted (180aa) NCBI GI: 4885509
Description:

neuroblastoma, suppression of tumorigenicity 1 2 precursor

Referenced in:

TGF-beta Family

Other entries for this name:
alt prot [216aa] neuroblastoma, suppression of tumorigenicity 1 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         13           2
 C cysteine            5.6         10           1
 D aspartate           3.3          6           1
 E glutamate           9.4         17           3
 F phenylalanine       1.7          3           1
 G glycine             8.3         15           2
 H histidine           6.1         11           1
 I isoleucine          3.3          6           1
 K lysine              3.9          7           1
 L leucine             7.2         13           2
 M methionine          2.2          4           1
 N asparagine          2.2          4           1
 P proline            12.8         23           3
 Q glutamine           5.0          9           1
 R arginine            1.7          3           1
 S serine              7.2         13           1
 T threonine           3.9          7           1
 V valine              6.7         12           1
 W tryptophan          1.1          2           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neuroblastoma, suppression of tumorigenicity 1 2 prec... 
NBL1                  1.000   neuroblastoma, suppression of tumorigenicity 1 1 [H...
GREM2                 0.128   gremlin 2 precursor 
GREM1                 0.104   gremlin-1 precursor 
DAND5                 0.079   dante precursor 
CER1                  0.068   cerberus 1 
PHLDA1                0.057   pleckstrin homology-like domain, family A, member 1 ...
FOXL2                 0.038   forkhead box L2 
SASH1                 0.035   SAM and SH3 domain containing 1 
SNX26                 0.033   sorting nexin 26 
POU3F2                0.030   POU domain, class 3, transcription factor 2 
A2BP1                 0.027   ataxin 2-binding protein 1 isoform 4 
A2BP1                 0.027   ataxin 2-binding protein 1 isoform 5 
A2BP1                 0.027   ataxin 2-binding protein 1 isoform 3 
A2BP1                 0.027   ataxin 2-binding protein 1 isoform 2 
A2BP1                 0.027   ataxin 2-binding protein 1 isoform 1 
A2BP1                 0.027   ataxin 2-binding protein 1 isoform 4 
HOXA4                 0.027   homeobox A4 
MAMLD1                0.027   mastermind-like domain containing 1 
SCRIB                 0.027   scribble isoform b 
SCRIB                 0.027   scribble isoform a 
HCN2                  0.025   hyperpolarization activated cyclic nucleotide-gated...
CRTC1                 0.025   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.025   mucoepidermoid carcinoma translocated 1 isoform 1 [...
FOXB2                 0.025   forkhead box B2 
SF3B4                 0.022   splicing factor 3b, subunit 4 
SSBP3                 0.022   single stranded DNA binding protein 3 isoform b [Hom...
LOC100291817          0.022   PREDICTED: hypothetical protein XP_002345526 
LOC100288574          0.022   PREDICTED: hypothetical protein 
LOC100290372          0.022   PREDICTED: hypothetical protein XP_002346788 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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