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Search of human proteins with 239746658
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746658 PREDICTED: hypothetical protein [Homo sapiens]
(411 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746658 PREDICTED: hypothetical protein [Homo sapiens] 873 0.0
gi|239752133 PREDICTED: hypothetical protein [Homo sapiens] 394 e-110
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 55 1e-07
gi|23510413 sorting nexin 26 [Homo sapiens] 54 3e-07
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 52 7e-07
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 52 7e-07
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 51 2e-06
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 50 5e-06
gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens] 49 6e-06
gi|32307166 Rho guanine exchange factor 15 [Homo sapiens] 49 8e-06
gi|116235472 SH3-domain GRB2-like (endophilin) interacting prote... 49 1e-05
gi|14249150 single stranded DNA binding protein 4 isoform a [Hom... 49 1e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 47 2e-05
gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo ... 47 4e-05
gi|194272140 dendrin [Homo sapiens] 47 4e-05
gi|188536004 zinc finger protein 469 [Homo sapiens] 46 5e-05
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 46 7e-05
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 46 7e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 46 7e-05
gi|91208420 bassoon protein [Homo sapiens] 46 7e-05
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 46 7e-05
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 45 9e-05
gi|41281612 zinc finger protein 828 [Homo sapiens] 45 9e-05
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 45 9e-05
gi|163965366 nascent polypeptide-associated complex alpha subuni... 45 2e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 44 2e-04
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 44 2e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens] 44 3e-04
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 44 3e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 44 3e-04
>gi|239746658 PREDICTED: hypothetical protein [Homo sapiens]
Length = 411
Score = 873 bits (2256), Expect = 0.0
Identities = 411/411 (100%), Positives = 411/411 (100%)
Query: 1 MQRLRRAIRRRAAQPAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPP 60
MQRLRRAIRRRAAQPAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPP
Sbjct: 1 MQRLRRAIRRRAAQPAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPP 60
Query: 61 RHPWTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPHPKL 120
RHPWTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPHPKL
Sbjct: 61 RHPWTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPHPKL 120
Query: 121 GSSLPFTPFRAMSTFPGVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIW 180
GSSLPFTPFRAMSTFPGVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIW
Sbjct: 121 GSSLPFTPFRAMSTFPGVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIW 180
Query: 181 DPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGRGT 240
DPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGRGT
Sbjct: 181 DPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGRGT 240
Query: 241 YRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPAD 300
YRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPAD
Sbjct: 241 YRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPAD 300
Query: 301 GFGAEEGPLAHLEERSEGWASTFLSAPGPQHPPTPPACSGAATRREPPGNARQSRGVGAG 360
GFGAEEGPLAHLEERSEGWASTFLSAPGPQHPPTPPACSGAATRREPPGNARQSRGVGAG
Sbjct: 301 GFGAEEGPLAHLEERSEGWASTFLSAPGPQHPPTPPACSGAATRREPPGNARQSRGVGAG 360
Query: 361 KPEPQRRPPRGSRAARRPRARRVFTDPRRHTRHRTRRSVAPPGCFCPACSQ 411
KPEPQRRPPRGSRAARRPRARRVFTDPRRHTRHRTRRSVAPPGCFCPACSQ
Sbjct: 361 KPEPQRRPPRGSRAARRPRARRVFTDPRRHTRHRTRRSVAPPGCFCPACSQ 411
>gi|239752133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 394 bits (1012), Expect = e-110
Identities = 182/182 (100%), Positives = 182/182 (100%)
Query: 230 QGRWKNRGRGTYRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAV 289
QGRWKNRGRGTYRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAV
Sbjct: 43 QGRWKNRGRGTYRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAV 102
Query: 290 LACSARLSPADGFGAEEGPLAHLEERSEGWASTFLSAPGPQHPPTPPACSGAATRREPPG 349
LACSARLSPADGFGAEEGPLAHLEERSEGWASTFLSAPGPQHPPTPPACSGAATRREPPG
Sbjct: 103 LACSARLSPADGFGAEEGPLAHLEERSEGWASTFLSAPGPQHPPTPPACSGAATRREPPG 162
Query: 350 NARQSRGVGAGKPEPQRRPPRGSRAARRPRARRVFTDPRRHTRHRTRRSVAPPGCFCPAC 409
NARQSRGVGAGKPEPQRRPPRGSRAARRPRARRVFTDPRRHTRHRTRRSVAPPGCFCPAC
Sbjct: 163 NARQSRGVGAGKPEPQRRPPRGSRAARRPRARRVFTDPRRHTRHRTRRSVAPPGCFCPAC 222
Query: 410 SQ 411
SQ
Sbjct: 223 SQ 224
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 55.1 bits (131), Expect = 1e-07
Identities = 108/408 (26%), Positives = 133/408 (32%), Gaps = 79/408 (19%)
Query: 1 MQRLRRAIRRRAAQPAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPP 60
M R + AA AP TPR P P RP P +P +L+ L A +
Sbjct: 1 MDNKRDKAKAGAAARTPAARAPGLLTPRPPGSP----RPP--PPVTPAALRVLGAAGAVG 54
Query: 61 RHPWTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPHPKL 120
R P A G GG I E S GP RPP R A P K
Sbjct: 55 RKPLAERAGGIGGAT--------IPE----SAPRAGPTRTSRPPASGRGERA---PPAKN 99
Query: 121 GSSLPFT-PFRAMSTFPGVGAGDALPRLPRAGTEAPGK------------GARE------ 161
S P + P RA T G R+ T A GK GAR
Sbjct: 100 TSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPT 159
Query: 162 -GTRRAPVRKPGLSAGAGIWDPN-AVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPH 219
GT + + +AG + P A +A PRP G R V+ +S+
Sbjct: 160 PGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHST----------- 208
Query: 220 RMKGFTAHSPQGRWK-NRGRGTYRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWT 278
T SP R + + G G R P + S TP RSGP +R R
Sbjct: 209 -----TEPSPAARRRPSAGGGLQR---PASRSLSSSATPLSSPARSGPSARGTPRAPAHP 260
Query: 279 GDSAAVGAAAVLACSARLSPADGFGAEEGPLAHLEERSEGWASTFLSAPGPQHPPTPPAC 338
G A+ D A GPL+ S+ L+ P P PP+P A
Sbjct: 261 SQPKPKGLQALRPPQVTPPRKDAAPAL-GPLS----------SSPLATPSPSAPPSPSAP 309
Query: 339 SGAATRREPPGNARQSRGVGAGKPEPQR------RPPRGSRAARRPRA 380
T PP G P Q PP A P+A
Sbjct: 310 PSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQA 357
Score = 45.1 bits (105), Expect = 1e-04
Identities = 80/355 (22%), Positives = 109/355 (30%), Gaps = 61/355 (17%)
Query: 15 PAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEAMGTGGC 74
P P PSATP PP P P SP + ++ +PP P P +
Sbjct: 415 PPASPPVSPSATPPSQAPPSLAAPPLQVPP-SPPASPPMSPSATPP--PQAPPPLAAPPL 471
Query: 75 QGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPHPKLGSSLPFTPFRAMST 134
Q + Q P L PP A P PF+P ++
Sbjct: 472 Q-------------LAKPPPQAPPALATPP-----LQALPSPPASFPGQAPFSPSASLPM 513
Query: 135 FP-GVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIWDPN-AVAAGPRPG 192
P A P L + P T +AP R P + P +A P P
Sbjct: 514 SPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPP 573
Query: 193 RPGLRSHVTRYMGYSSLSEGFRELE-PHRMKGFTAHSPQGRWKNRGRGTYRGAGPGAGSA 251
P RS + G P ++G+ + P+G GA ++
Sbjct: 574 PPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDS-GPEG---------------GAAAS 617
Query: 252 PPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPADGFGAEEGPLAH 311
PP P + W R G + + PA G G+ +G
Sbjct: 618 PP-----PDAELAACHPAAWSR-----GPAPPLAFRGAPGAPLPWPPATGPGSADGLCTI 667
Query: 312 LEERSEGWASTFLSAPGPQHPPTPPACSGAATRREPPGNARQSRGVGAGKPEPQR 366
E +EG S APG P P SG G A G GA P++
Sbjct: 668 YE--TEGPESA-TPAPGALDPGPSPGTSG--------GKAAAGAGAGASSRSPKQ 711
Score = 43.1 bits (100), Expect = 5e-04
Identities = 80/366 (21%), Positives = 115/366 (31%), Gaps = 76/366 (20%)
Query: 15 PAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQS--LNAPPSPPRHP-WTPEAMGT 71
P P +PP++ P P+ A P+ +P SL + L PPSPP P +P A
Sbjct: 408 PVQAPFSPPASPPVSPS--------ATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPP 459
Query: 72 GGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPH--PPRARSATLYPHPKLGSSLP---- 125
+ P +L +PP PP + L P +S P
Sbjct: 460 PQAPPPLA---------------APPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAP 504
Query: 126 FTPFRAMSTFP-GVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIWDPN- 183
F+P ++ P A P L + P T +AP R P + P
Sbjct: 505 FSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRL 564
Query: 184 AVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELE-PHRMKGFTAHSPQGRWKNRGRGTYR 242
+A P P P RS + G P ++G+ + P+G
Sbjct: 565 TLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDS-GPEG----------- 612
Query: 243 GAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPADGF 302
GA ++PP P + W R G + + PA G
Sbjct: 613 ----GAAASPP-----PDAELAACHPAAWSR-----GPAPPLAFRGAPGAPLPWPPATGP 658
Query: 303 GAEEGPLAHLEERSEGWASTFLSAPGPQHPPTPPACSGAATRREPPGNARQSRGVGAGKP 362
G+ +G T GP+ P GA PG + GAG
Sbjct: 659 GSADG------------LCTIYETEGPESATPAP---GALDPGPSPGTSGGKAAAGAGAG 703
Query: 363 EPQRRP 368
R P
Sbjct: 704 ASSRSP 709
Score = 33.9 bits (76), Expect = 0.28
Identities = 70/259 (27%), Positives = 83/259 (32%), Gaps = 77/259 (29%)
Query: 12 AAQPAVGPHAPPSATPRHPTPPHATL--RPAAAPAHSPQSLQS----------------- 52
AA P PP A P TPP L PA+ P +P S +
Sbjct: 467 AAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPV 526
Query: 53 -----LNAPPSPPRHP--WTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPR-----EL 100
L PPSPP P P T G V GPR
Sbjct: 527 LAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSV----------------SGPRLTLALAP 570
Query: 101 GRPPHPPRARSATLYPHPKLG--SSLPFTP--FRAMSTFPGVGAGDALPR-------LPR 149
G PP P R+ S+TL G SS TP R + P GA + P P
Sbjct: 571 GPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPA 630
Query: 150 AGTEAPGKG-AREGTRRAPVRKPGLSAGAGIWD-----------------PNAVAAGPRP 191
A + P A G AP+ P + G G D P A+ GP P
Sbjct: 631 AWSRGPAPPLAFRGAPGAPLPWPP-ATGPGSADGLCTIYETEGPESATPAPGALDPGPSP 689
Query: 192 GRPGLRSHVTRYMGYSSLS 210
G G ++ G SS S
Sbjct: 690 GTSGGKAAAGAGAGASSRS 708
Score = 29.6 bits (65), Expect = 5.2
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 320 ASTFLSAPGPQHPPTPPACSGAATRREPP--------GNARQSRGVGAGKPEPQRRPP 369
A L+AP Q PP+PPA R PP R + + G P P R P
Sbjct: 523 APPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSP 580
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 53.5 bits (127), Expect = 3e-07
Identities = 111/427 (25%), Positives = 145/427 (33%), Gaps = 100/427 (23%)
Query: 16 AVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEAMGTGGCQ 75
A GP P +P P PP + LRP APP PP++P A
Sbjct: 702 AQGPLGPDMESPL-PPPPLSLLRPG-------------GAPPPPPKNPARLMA------- 740
Query: 76 GKVKFFLGIRERGRSSRKHQGPRELGRPP---HPPRARSATL-YPHPKLGSSLPFTPFRA 131
L + ER + + Q +E G P P RS +L LG+S P +
Sbjct: 741 ------LALAERAQQVAEQQSQQECGGTPPASQSPFHRSLSLEVGGEPLGTSGSGPPPNS 794
Query: 132 MSTFPGVGAGDALPRLPRAGTEAPGKGARE--GTRRAPVRKPG-----LSAGAGIWD-PN 183
++ PG P LPR ++ ++ GT R +R P L AG G D P
Sbjct: 795 LA-HPGAWVPGPPPYLPRQQSDGSLLRSQRPMGTSRRGLRGPAQVSAQLRAGGGGRDAPE 853
Query: 184 AVAAGP-----RPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWK---- 234
A A P + PG S R L L P F SP W+
Sbjct: 854 AAAQSPCSVPSQVPTPGFFSPAPRECLPPFLGVPKPGLYPLGPPSFQPSSPAPVWRSSLG 913
Query: 235 -----NRGRGTYRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAV 289
+RG Y G GS PY SGP +R+W D
Sbjct: 914 PPAPLDRGENLYYEIGASEGS--------PY---SGP-TRSWSPFRSMPPD--------- 952
Query: 290 LACSARLSPADGFGAEEGPLAHLEERSEGWASTFLSAP-----------GPQHP---PTP 335
RL+ + G + PL RS + ++ AP PQHP PTP
Sbjct: 953 -----RLNASYGMLGQSPPL----HRSPDFLLSYPPAPSCFPPDHLGYSAPQHPARRPTP 1003
Query: 336 PACSGAATRREPPGNARQSRGVGAGKPEPQRRPPRGSRAARRPRARRVFTDPRRHTRHRT 395
P P G + S + P+ R G R P+ +R PR T HR
Sbjct: 1004 PEPLYVNLALGPRGPSPASSSSSSPPAHPRSRSDPGPPVPRLPQKQRAPWGPR--TPHRV 1061
Query: 396 RRSVAPP 402
PP
Sbjct: 1062 PGPWGPP 1068
Score = 32.0 bits (71), Expect = 1.0
Identities = 58/249 (23%), Positives = 79/249 (31%), Gaps = 52/249 (20%)
Query: 14 QPAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSL-----QSLNAPPSPPRHPWTP-E 67
+P + P PPS P P P + AP ++L S +P S P W+P
Sbjct: 888 KPGLYPLGPPSFQPSSPAPVWRSSLGPPAPLDRGENLYYEIGASEGSPYSGPTRSWSPFR 947
Query: 68 AMGTGGCQGKVKFFLGIRERGRSSRKHQGPR-ELGRPPHPPRARSATLYPHPKLGSSLPF 126
+M G+S H+ P L PP P + +P LG S P
Sbjct: 948 SMPPDRLNASYGML------GQSPPLHRSPDFLLSYPPAP------SCFPPDHLGYSAPQ 995
Query: 127 TPFR---------------AMSTFPGVGAGDALPRLPRAGTE-------APGKGAREGTR 164
P R P + + P PR+ ++ P K
Sbjct: 996 HPARRPTPPEPLYVNLALGPRGPSPASSSSSSPPAHPRSRSDPGPPVPRLPQKQRAPWGP 1055
Query: 165 RAPVRKPGLSAGAGIWDPNAV-----AAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPH 219
R P R P G W P AA P GR G + Y EG P+
Sbjct: 1056 RTPHRVP------GPWGPPEPLLLYRAAPPAYGRGGELHRGSLYRNGGQRGEGAGPPPPY 1109
Query: 220 RMKGFTAHS 228
++ HS
Sbjct: 1110 PTPSWSLHS 1118
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 52.4 bits (124), Expect = 7e-07
Identities = 102/395 (25%), Positives = 136/395 (34%), Gaps = 85/395 (21%)
Query: 2 QRLRRAIRRRAAQPAVGPHAPPSATPRHPTPPHATLRP---AAAPAHSPQSLQSLNAPPS 58
+RL + A + P +A PR T + L P AA P+ L P
Sbjct: 555 RRLAKGPELMAIEGLENGEGPATAGPRLLTFQGSELSPELQAAMAGGGPEPL------PL 608
Query: 59 PPRHPWTPEAMGTGGCQGKVKFFLGIRERGRS-SRKHQGPRELGRPPHPPRARS---ATL 114
PP + E++G R RG S++ P+ G P PP+ R+ T
Sbjct: 609 PPARSPSQESIGA-------------RSRGSGHSQEQPAPQPSGGDPSPPQERNLPEGTE 655
Query: 115 YPHPKLGSSLPFT---PFRAM-------STFPGVGAGDALPRLPRAGTEA-PGKGAREGT 163
P PKL SSLP P+ M S PG G AG A P R
Sbjct: 656 RP-PKLCSSLPGQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKR 714
Query: 164 RRAPVRKPGLSAGAGIWDPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKG 223
R + +PG + G D A GP G + +TR G S+L + P +G
Sbjct: 715 RSHSLSRPGPTEG----DAEGEAEGPVGSTLGSYATLTRRPGRSALVRTSPSVTPTPARG 770
Query: 224 FTAHSPQGRWKNRGRGT--------YRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTW 275
T S + R +G +GP P E+P P +GPR RT
Sbjct: 771 -TPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPPPLDESPGPKEGATGPRRRT----- 824
Query: 276 CWTGDSAAVGAAAVLACSARLSPADGFGAEEGPLAHLEERSEGWASTFLSAPGPQHPPTP 335
L+ A S G A GP + EE PGP+ P
Sbjct: 825 --------------LSEPAGPSEPPGPPAPAGPASDTEEEE----------PGPEGTPPS 860
Query: 336 PACSGAATRREPPGNARQSRGVGAGKPEPQRRPPR 370
SG GN + +P+P PPR
Sbjct: 861 RGSSGEGLPFAEEGNLTIKQ-----RPKPAGPPPR 890
Score = 34.7 bits (78), Expect = 0.16
Identities = 52/176 (29%), Positives = 63/176 (35%), Gaps = 26/176 (14%)
Query: 13 AQPAVGPHAP-PSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAP----PSPPRHPWTPE 67
A GP AP PS TP +PP ++L P P SL + P PSP P P
Sbjct: 930 ASATPGPAAPLPSPTPGE-SPPASSL-----PQPEPSSLPAQGVPTPLAPSPAMQPPVPP 983
Query: 68 AMGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATL-YPHPKLGSSL-- 124
G G + G E + G P P L + PKL L
Sbjct: 984 CPGPGLESSAASRWNGETEPPAAPAALLKVPGAGTAPKPVSVACTQLAFSGPKLAPRLGP 1043
Query: 125 -PFTPFRAMSTFPGVGAGDALPRLP----------RAGTEAPGKGAREGTRRAPVR 169
P P R ST VG G A RL RA ++ G +EGT A +
Sbjct: 1044 RPVPPPRPEST-GTVGPGQAQQRLEQTSSSLAAALRAAEKSIGTKEQEGTPSASTK 1098
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 52.4 bits (124), Expect = 7e-07
Identities = 102/395 (25%), Positives = 136/395 (34%), Gaps = 85/395 (21%)
Query: 2 QRLRRAIRRRAAQPAVGPHAPPSATPRHPTPPHATLRP---AAAPAHSPQSLQSLNAPPS 58
+RL + A + P +A PR T + L P AA P+ L P
Sbjct: 637 RRLAKGPELMAIEGLENGEGPATAGPRLLTFQGSELSPELQAAMAGGGPEPL------PL 690
Query: 59 PPRHPWTPEAMGTGGCQGKVKFFLGIRERGRS-SRKHQGPRELGRPPHPPRARS---ATL 114
PP + E++G R RG S++ P+ G P PP+ R+ T
Sbjct: 691 PPARSPSQESIGA-------------RSRGSGHSQEQPAPQPSGGDPSPPQERNLPEGTE 737
Query: 115 YPHPKLGSSLPFT---PFRAM-------STFPGVGAGDALPRLPRAGTEA-PGKGAREGT 163
P PKL SSLP P+ M S PG G AG A P R
Sbjct: 738 RP-PKLCSSLPGQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKR 796
Query: 164 RRAPVRKPGLSAGAGIWDPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKG 223
R + +PG + G D A GP G + +TR G S+L + P +G
Sbjct: 797 RSHSLSRPGPTEG----DAEGEAEGPVGSTLGSYATLTRRPGRSALVRTSPSVTPTPARG 852
Query: 224 FTAHSPQGRWKNRGRGT--------YRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTW 275
T S + R +G +GP P E+P P +GPR RT
Sbjct: 853 -TPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPPPLDESPGPKEGATGPRRRT----- 906
Query: 276 CWTGDSAAVGAAAVLACSARLSPADGFGAEEGPLAHLEERSEGWASTFLSAPGPQHPPTP 335
L+ A S G A GP + EE PGP+ P
Sbjct: 907 --------------LSEPAGPSEPPGPPAPAGPASDTEEEE----------PGPEGTPPS 942
Query: 336 PACSGAATRREPPGNARQSRGVGAGKPEPQRRPPR 370
SG GN + +P+P PPR
Sbjct: 943 RGSSGEGLPFAEEGNLTIKQ-----RPKPAGPPPR 972
Score = 34.7 bits (78), Expect = 0.16
Identities = 52/176 (29%), Positives = 63/176 (35%), Gaps = 26/176 (14%)
Query: 13 AQPAVGPHAP-PSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAP----PSPPRHPWTPE 67
A GP AP PS TP +PP ++L P P SL + P PSP P P
Sbjct: 1012 ASATPGPAAPLPSPTPGE-SPPASSL-----PQPEPSSLPAQGVPTPLAPSPAMQPPVPP 1065
Query: 68 AMGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATL-YPHPKLGSSL-- 124
G G + G E + G P P L + PKL L
Sbjct: 1066 CPGPGLESSAASRWNGETEPPAAPAALLKVPGAGTAPKPVSVACTQLAFSGPKLAPRLGP 1125
Query: 125 -PFTPFRAMSTFPGVGAGDALPRLP----------RAGTEAPGKGAREGTRRAPVR 169
P P R ST VG G A RL RA ++ G +EGT A +
Sbjct: 1126 RPVPPPRPEST-GTVGPGQAQQRLEQTSSSLAAALRAAEKSIGTKEQEGTPSASTK 1180
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 50.8 bits (120), Expect = 2e-06
Identities = 102/420 (24%), Positives = 138/420 (32%), Gaps = 84/420 (20%)
Query: 24 SATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPP---RHPWTPEAMGTGGCQGKVKF 80
+ATP P P + LR AA ++ PP PP +P PE G G
Sbjct: 797 TATPAEPRPLTSPLRQAADEDDKGMRSETPPVPPPPPYLASYPGFPE----NGAPGP--- 849
Query: 81 FLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPH----PKLGSSLPFTPFRAMSTFP 136
R + GPR L PP P PK ++ P
Sbjct: 850 -----PISRFPLEEPGPRPLPWPPGSDEVAKIQTPPPKKEPPKEETAQLTGPEAGRKPAR 904
Query: 137 GVGAGDALPRLPRAGTEAPGK-GAREGTRR---------------APVRKPGLSAGAGIW 180
GVG+G P PR + + G R G+ R P++KP
Sbjct: 905 GVGSGGQGPPPPRRESRTETRWGPRPGSSRRGIPPEEPGAPPRRAGPIKKPPPPTKVEEL 964
Query: 181 DPNAVAAG---PRPGRPGLRSHVTRYMGYSSLSEGFRELEPH-RMKGFTAHSPQG--RWK 234
P + G P+P +P +G + L P R++ ++ G +
Sbjct: 965 PPKPLEQGDETPKPPKPDPLKITKGKLGGPKETPPNGNLSPAPRLRRDYSYERVGPTSCR 1024
Query: 235 NRGRGTYRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAA------- 287
RGRG Y G G G R G RSR +R + GD G
Sbjct: 1025 GRGRGEYFARGRGFRGTYGG-------RGRGARSREFRSYREFRGDDGRGGGTGGPNHPP 1077
Query: 288 AVLACSARLSPADGFGAEEGPLAHLEERSEGWASTFLS--APGPQHPPTP---------- 335
A +A + ++G EE P + SE + T S AP + PTP
Sbjct: 1078 APRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKEAPTPKEGTLTQVPL 1137
Query: 336 -PACSGAATRREP------------PGNARQSRGVGAGKPEPQ----RRPPRGSRAARRP 378
P GA P P RG G G+P PQ PP S A ++P
Sbjct: 1138 APPPPGAPPSPAPARFTARGGRVFTPRGVPSRRGRGGGRPPPQVCPGWSPPAKSLAPKKP 1197
Score = 42.0 bits (97), Expect = 0.001
Identities = 97/438 (22%), Positives = 135/438 (30%), Gaps = 95/438 (21%)
Query: 45 HSPQSLQSLNAPPSPPRHPWTPEAMGTGGCQGK--------------------------- 77
H+P L+ PP P+ W + + +
Sbjct: 772 HAPAMLRERGTPPVDPKLAWVGDVFTATPAEPRPLTSPLRQAADEDDKGMRSETPPVPPP 831
Query: 78 ---VKFFLGIRERG-------RSSRKHQGPRELGRPPHPPRARSATLYP----HPKLGSS 123
+ + G E G R + GPR L PP P PK ++
Sbjct: 832 PPYLASYPGFPENGAPGPPISRFPLEEPGPRPLPWPPGSDEVAKIQTPPPKKEPPKEETA 891
Query: 124 LPFTPFRAMSTFPGVGAGDALPRLPRAGTEAPGK-GAREGT---------------RRAP 167
P GVG+G P PR + + G R G+ R P
Sbjct: 892 QLTGPEAGRKPARGVGSGGQGPPPPRRESRTETRWGPRPGSSRRGIPPEEPGAPPRRAGP 951
Query: 168 VRKPGLSAGAGIWDPNAVAAG---PRPGRPGLRSHVTRYMGYSSLSEGFRELEP-HRMKG 223
++KP P + G P+P +P +G + L P R++
Sbjct: 952 IKKPPPPTKVEELPPKPLEQGDETPKPPKPDPLKITKGKLGGPKETPPNGNLSPAPRLRR 1011
Query: 224 FTAHSPQG--RWKNRGRGTYRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDS 281
++ G + RGRG Y G G G R G RSR +R + GD
Sbjct: 1012 DYSYERVGPTSCRGRGRGEYFARGRGFRGTYGG-------RGRGARSREFRSYREFRGDD 1064
Query: 282 AAVGAA-------AVLACSARLSPADGFGAEEGPLAHLEERSEGWASTFLS--APGPQHP 332
G A +A + ++G EE P + SE + T S AP +
Sbjct: 1065 GRGGGTGGPNHPPAPRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKEA 1124
Query: 333 PTPPACSGAATRREPPGNARQSRGVGAGKPEPQRRPPRGSRAARRPRARRVFTDPRRHTR 392
PTP + PP P PP + A R RVFT PR
Sbjct: 1125 PTPKEGTLTQVPLAPP---------------PPGAPPSPAPARFTARGGRVFT-PRGVPS 1168
Query: 393 HRTRRSVAPPGCFCPACS 410
R R PP CP S
Sbjct: 1169 RRGRGGGRPPPQVCPGWS 1186
Score = 38.9 bits (89), Expect = 0.009
Identities = 67/265 (25%), Positives = 91/265 (34%), Gaps = 33/265 (12%)
Query: 39 PAAAPAHSPQSLQSLNAPPSPPRHPWTPEAMGTGGCQGKVKF-FLGIRERGRSSRKHQGP 97
P P PQ + +L A P+P P P+A+ G + R + P
Sbjct: 674 PTPVPPSPPQPV-TLGAVPAPQAPPPPPKALYPGALGRPPPMPPMNFDPRWMMIPPYVDP 732
Query: 98 REL-GRPP---HPPRARSATLYPHPKL----GSSLPF-----TPFRAMSTFPG----VGA 140
R L GRPP +PP + L P + SS PF R T P
Sbjct: 733 RLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSEPFDRHAPAMLRERGTPPVDPKLAWV 792
Query: 141 GDALPRLP----------RAGTEAPGKGAREGTRRAPVRKPGLSAGAGIWDPNAVAAGPR 190
GD P R + KG R T P P L++ G P A GP
Sbjct: 793 GDVFTATPAEPRPLTSPLRQAADEDDKGMRSETPPVPPPPPYLASYPGF--PENGAPGPP 850
Query: 191 PGRPGLRSHVTRYMGYSSLSEGFRELE--PHRMKGFTAHSPQGRWKNRGRGTYRGAGPGA 248
R L R + + S+ +++ P + + + Q GR RG G G
Sbjct: 851 ISRFPLEEPGPRPLPWPPGSDEVAKIQTPPPKKEPPKEETAQLTGPEAGRKPARGVGSGG 910
Query: 249 GSAPPGETPAPYTRRSGPRSRTWRR 273
PP + R GPR + RR
Sbjct: 911 QGPPPPRRESRTETRWGPRPGSSRR 935
Score = 34.3 bits (77), Expect = 0.21
Identities = 37/161 (22%), Positives = 57/161 (35%), Gaps = 19/161 (11%)
Query: 246 PGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPADGFGAE 305
P + PP P P T P ++ G V AA L + + G+
Sbjct: 529 PAPPAPPPASAPTPETEPEEPAQAPPAQSTPTPG----VAAAPTLVSGGGSTSSTSSGSF 584
Query: 306 EGPLAHLEERSEGWASTFLSAPGPQHPPTP---PACSGAATRREPPGNARQSRGVGAGKP 362
E + S+ P P PP P P G R+PP G G P
Sbjct: 585 EASPVEPQLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPSQ-------GLGYP 637
Query: 363 EPQRR-PPRGSRAARRPRARRVFTDPRRHTRHRTRRSVAPP 402
+ Q+ PPR +R + ++ ++H + ++ APP
Sbjct: 638 KYQKSLPPR----FQRQQQEQLLKQQQQHQWQQHQQGSAPP 674
Score = 30.0 bits (66), Expect = 4.0
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 14/59 (23%)
Query: 9 RRRAAQPAVGPHAP---------PSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPS 58
+R A+PA P AP P P P PP PA+AP + + APP+
Sbjct: 502 KRLKAEPAAPPAAPSTPAPPPAVPKELPAPPAPP-----PASAPTPETEPEEPAQAPPA 555
Score = 29.6 bits (65), Expect = 5.2
Identities = 45/176 (25%), Positives = 67/176 (38%), Gaps = 35/176 (19%)
Query: 97 PRELGRPPHPPRARSATLYPHPKLGSSLPFTPFRAMSTFPGVGAGDALPRLPRAG--TEA 154
P+EL PP PP A + T P+ + P P ++ T PGV A P L G T +
Sbjct: 525 PKELPAPPAPPPASAPTPETEPEEPAQAP--PAQSTPT-PGVAAA---PTLVSGGGSTSS 578
Query: 155 PGKGAREGTRRAPVRKPGLSAGAGIWDPNAVAAGPRPGRPGL----------RSHVTRYM 204
G+ E +PV +P L + G P V P P + R ++ +
Sbjct: 579 TSSGSFEA---SPV-EPQLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPSQGL 634
Query: 205 GYSSLSEGF-RELEPHRMKGFTAHSPQGRWKNRGRGTYRGAGPGAGSAPPGETPAP 259
GY + + + + Q +W+ + GSAPP TP P
Sbjct: 635 GYPKYQKSLPPRFQRQQQEQLLKQQQQHQWQQHQQ----------GSAPP--TPVP 678
Score = 29.3 bits (64), Expect = 6.8
Identities = 29/92 (31%), Positives = 32/92 (34%), Gaps = 16/92 (17%)
Query: 319 WASTFL---SAPGPQ--HPPTPPACSGAATRREPPGNARQSRGVGAGKPEP--------Q 365
WA T + PGP PP PP G A PPG+ G P P Q
Sbjct: 392 WAETSRPPETEPGPPAPKPPLPPPHRGPAGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQ 451
Query: 366 RRPPRGSR---AARRPRARRVFTDPRRHTRHR 394
RR S A R R RR + R R
Sbjct: 452 RRKQSSSEISLAVERARRRREEEERRMQEERR 483
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 49.7 bits (117), Expect = 5e-06
Identities = 90/392 (22%), Positives = 123/392 (31%), Gaps = 96/392 (24%)
Query: 15 PAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEAMGTGGC 74
P P PP + +P +P P PQ PP PP P P G
Sbjct: 94 PPGKPQGPPPQGDKSRSPRSPPGKPQGPP---PQGGNQPQGPPPPPGKPQGPPPQGGNKP 150
Query: 75 QGKVKFFLGIRE--------RGRSSR----KHQGPRELG--RPPHPPRARSATLYPHPKL 120
QG G + + RSSR K QGP G +P PP P P+
Sbjct: 151 QGPPP--PGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 208
Query: 121 GSSL--PFTPFRAMSTFP-GVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGA 177
G+ P P + P G + P P +G + + P PG G
Sbjct: 209 GNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQ--PQGPPPPPGKPQGP 266
Query: 178 GIWDPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRG 237
N P PG+P PQG K+R
Sbjct: 267 PPQGGNKPQGPPPPGKP------------------------------QGPPPQGGSKSRS 296
Query: 238 R----GTYRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACS 293
G +G P G+ P G P P + GP
Sbjct: 297 SRSPPGKPQGPPPQGGNQPQGPPPPP-GKPQGP--------------------------- 328
Query: 294 ARLSPADGFGAEEGPLAHLEERS---EGWASTFLSAPGPQHPPTPPACSGAATRREPP-- 348
P G +GP + + +G + + + P P PP G + PP
Sbjct: 329 ----PPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPA 384
Query: 349 -GNARQSRGVGAGKPEPQRRPPRGSRAARRPR 379
GN +Q + AG+P+ RPP+G R +R P+
Sbjct: 385 GGNPQQPQAPPAGQPQGPPRPPQGGRPSRPPQ 416
Score = 48.5 bits (114), Expect = 1e-05
Identities = 89/378 (23%), Positives = 123/378 (32%), Gaps = 62/378 (16%)
Query: 39 PAAAPAHSPQSLQSLNAPPSPPRHPWTPEAMGTGGCQGKVKFFLGIRERG---RSSRKHQ 95
P AP PQ PPSPP P P G QG + +G + K Q
Sbjct: 36 PQGAP---PQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPP--PPGKPQGPPPQGGNKPQ 90
Query: 96 GPRELGRPPHPPRARSATLYPHPKLGSSLPFTPFRAMSTFPGVGAGDALPRLPRAGTEAP 155
GP G+P PP P+ S R+ + PG G P+ G +
Sbjct: 91 GPPPPGKPQGPP----------PQGDKS------RSPRSPPGKPQGPP----PQGGNQPQ 130
Query: 156 GKGAREGTRRAPVRKPGLSAGAGIWDPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRE 215
G P PG G N P PG+P SS S +
Sbjct: 131 G----------PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKP 180
Query: 216 LEPHRMKGFTAHSPQGRWKNRGRGTYRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTW 275
P G + PQG G+ +G P G+ P G P P + GP + ++
Sbjct: 181 QGPPPQGG---NQPQGPPPPPGKP--QGPPPQGGNKPQG--PPPPGKPQGPPPQGDNKSQ 233
Query: 276 CWTGDSAAVGAAAVLACSARLSPADGFGAEEGPLAHLEERSEGWASTFLSAPGPQHPPTP 335
+ P G +GP + +G P P P P
Sbjct: 234 SARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG-------PPPPGKPQGP 286
Query: 336 PACSGAATR--REPPGNARQSRGVGAGKPE--------PQRRPPRGSRAARRPRARRVFT 385
P G+ +R R PPG + G +P+ PQ PP+G + P
Sbjct: 287 PPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ 346
Query: 386 DPRRHTRHRTRRSVAPPG 403
P ++R + +PPG
Sbjct: 347 GPPPQGGSKSRSARSPPG 364
>gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens]
Length = 669
Score = 49.3 bits (116), Expect = 6e-06
Identities = 102/409 (24%), Positives = 138/409 (33%), Gaps = 71/409 (17%)
Query: 22 PPSAT--PRHPTPPHATLRPAAAPAHSPQSLQS----LNAPPSPPRHPWTPEAMGTGGCQ 75
PP T P+ P PP T P L L A P P R P PE
Sbjct: 97 PPEVTDLPKKPPPPEVTDLPKKPSKLELSDLSKKFPQLGATPFP-RKPLQPEV------- 148
Query: 76 GKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYP----HPKLGSSLPFTPFRA 131
G+ + E G +RK P EL P PP + +P P+ G + P +P
Sbjct: 149 GEAPLKASLPEPGAPARKPLQPDELSHPARPPSEPKSGAFPRKLWQPEAGEATPRSPQPE 208
Query: 132 MSTFPGVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGA--GIWDPNA----- 184
+STFP A P+ P + G + V +P S A +W P +
Sbjct: 209 LSTFPKKPAQPEFNVYPK----KPPQPQVGGLPKKSVPQPEFSEAAQTPLWKPQSSEPKR 264
Query: 185 -------VAAGP-------RPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQ 230
A+ P +P +P L +TR +S + P K + PQ
Sbjct: 265 DSSAFPKKASQPPLSDFPKKPPQPEL-GDLTRTSSEPEVSVLPKRPRPAEFKALSKKPPQ 323
Query: 231 GRWKNRGRGT---------------YRGAGPGAGSAPPGETPAPYTRRSGPR--SRTWRR 273
R + R P S P E A R P R+
Sbjct: 324 PELGGLPRTSSEPEFNSLPRKLLQPERRGPPRKFSQP--EPSAVLKRHPQPEFFGDLPRK 381
Query: 274 TWCWTGDSAAVGAAAVLACSARLSPADGFGAEEGPLAHLEERSEGWASTFLSAPG--PQH 331
+ S + AAV S+R + GFGA P RS G + + PG P H
Sbjct: 382 PPLPSSASESSLPAAVAGFSSRHPLSPGFGAAGTP----RWRSGGLVHSGGARPGLRPSH 437
Query: 332 PPTPPACSGAATRREPPGNARQSRGVGAGKPEPQRRPPRGSRAARRPRA 380
PP A++ PP A+ G + RRP S RR R+
Sbjct: 438 PPRRRPLPPASSLGHPP--AKPPLPPGPVDMQSFRRPSAASIDLRRTRS 484
Score = 35.4 bits (80), Expect = 0.095
Identities = 41/133 (30%), Positives = 48/133 (36%), Gaps = 20/133 (15%)
Query: 1 MQRLRRAIRRRAAQPAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPS-- 58
+Q RR R+ +QP P + RHP P P P S S SL A +
Sbjct: 346 LQPERRGPPRKFSQPE-----PSAVLKRHPQPEFFGDLPRKPPLPSSASESSLPAAVAGF 400
Query: 59 PPRHPWTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRAR---SATLY 115
RHP +P G G R R G R RP HPPR R A+
Sbjct: 401 SSRHPLSP-GFGAAGTP---------RWRSGGLVHSGGARPGLRPSHPPRRRPLPPASSL 450
Query: 116 PHPKLGSSLPFTP 128
HP LP P
Sbjct: 451 GHPPAKPPLPPGP 463
Score = 32.3 bits (72), Expect = 0.80
Identities = 46/198 (23%), Positives = 60/198 (30%), Gaps = 44/198 (22%)
Query: 10 RRAAQPAVGPHAPPSATPRH------PTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHP 63
++ +QP + H + P P PP T P P P + L P PP
Sbjct: 45 KKFSQPELSEHPKKAPLPEFGAVSLKPPPPEVTDLPKKPP---PPEVTDLPKKPPPPEVT 101
Query: 64 WTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPH-PKLGS 122
P +K P P P + + L P+LG+
Sbjct: 102 DLP-------------------------KKPPPPEVTDLPKKPSKLELSDLSKKFPQLGA 136
Query: 123 SLPFTPFRAMSTFPGVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAG---- 178
TPF P VG LP G A K + P R P
Sbjct: 137 ----TPFPRKPLQPEVGEAPLKASLPEPGAPAR-KPLQPDELSHPARPPSEPKSGAFPRK 191
Query: 179 IWDPNAVAAGPRPGRPGL 196
+W P A A PR +P L
Sbjct: 192 LWQPEAGEATPRSPQPEL 209
>gi|32307166 Rho guanine exchange factor 15 [Homo sapiens]
Length = 841
Score = 48.9 bits (115), Expect = 8e-06
Identities = 72/256 (28%), Positives = 85/256 (33%), Gaps = 51/256 (19%)
Query: 3 RLRRAIRRRAAQPAVGPH--------------AP-PSATPRHPTPPHATLRPAA--APAH 45
R R R RAAQ PH AP P TP PP A+L+P A P+
Sbjct: 21 RPRPPSRSRAAQSPGPPHNGSSPQELPRNSNDAPTPMCTPIFWEPPAASLKPPALLPPSA 80
Query: 46 SPQSLQSLNAPPSPPRHPWTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPH 105
S SL S +P SP P TP + RS+ PR PP
Sbjct: 81 SRASLDSQTSPDSPSSTP-TPSPVSR-----------------RSASPEPAPRSPVPPPK 122
Query: 106 PPRARSATLYPHPKL-----GSSLPFTPFRAMSTFPGVGAGDALPRLPRAGTEAPGKGAR 160
P + L P + +S P T R F G G R A PG AR
Sbjct: 123 PSGSPCTPLLPMAGVLAQNGSASAPGTVRRLAGRFEGGAEG----RAQDADAPEPGLQAR 178
Query: 161 ---EGTRRAPVRKPGL----SAGAGIWDPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGF 213
G R AP+ G + AG+ P RPGL GY +
Sbjct: 179 ADVNGEREAPLTGSGSQENGAPDAGLACPPCCPCVCHTTRPGLELRWVPVGGYEEVPRVP 238
Query: 214 RELEPHRMKGFTAHSP 229
R P R H P
Sbjct: 239 RRASPLRTSRSRPHPP 254
>gi|116235472 SH3-domain GRB2-like (endophilin) interacting protein
1 [Homo sapiens]
Length = 828
Score = 48.5 bits (114), Expect = 1e-05
Identities = 63/240 (26%), Positives = 85/240 (35%), Gaps = 17/240 (7%)
Query: 20 HAPPSATPRHP--TPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTP-EAMGTGGCQG 76
H P TPR +PP PA +PA P PP PP P + Q
Sbjct: 322 HVTPELTPREKVVSPPATPDNPADSPAPGPLGPPGPTGPPGPPGPPRNVLSPLNLEEVQK 381
Query: 77 KVKFFLGIRE---RGRSSRKHQGPRELGRPPHPPRARSATLYPHPKLGSSLPFTPFRAMS 133
KV I++ SS K G + PP PP T+ P GS P +
Sbjct: 382 KVAEQTFIKDDYLETISSPKDFGLGQRATPPPPPPPTYRTVVSSPGPGSG----PGPGTT 437
Query: 134 TFPGVGAGDALPRLPRAGTEAPGKGAREGTR-RAPVRKPGLSAGAGIWDPNAVAAGPRPG 192
+ A A P +P T P R +R + P KPG+ + + P ++ P P
Sbjct: 438 SGASSPARPATPLVPCRSTTPPPPPPRPPSRPKLPPGKPGVGDVSRPFSPPIHSSSPPPI 497
Query: 193 RPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGRGTYRGAGPGAGSAP 252
P R+ T SS+S L P W +RG+ G G +P
Sbjct: 498 APLARAEST-----SSIS-STNSLSAATTPTVENEQPSLVWFDRGKFYLTFEGSSRGPSP 551
>gi|14249150 single stranded DNA binding protein 4 isoform a [Homo
sapiens]
Length = 385
Score = 48.5 bits (114), Expect = 1e-05
Identities = 72/264 (27%), Positives = 96/264 (36%), Gaps = 59/264 (22%)
Query: 15 PAVGPHAPPSATPRHPTPPHATLR-PAAAPAHSPQSLQSLNAPPSPPRHPWTPEAMGTGG 73
P +GPH P +PR P P TLR P+ PA P S L P +P A G
Sbjct: 138 PMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEP-----SPRAQGHPS 192
Query: 74 CQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPHPKLGSSLPFTPFRAMS 133
G ++ RG +S GP+ G PP P+ G LP AM+
Sbjct: 193 MGGPMQRV--TPPRGMAS---VGPQSYGGGMRPP--------PNSLAGPGLP-----AMN 234
Query: 134 TFPGV------GAGDALP---RLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAG-----I 179
PGV +G+++P P + T PG G GT P PG S + I
Sbjct: 235 MGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMP--SPGDSTNSSENMYTI 292
Query: 180 WDPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGRG 239
+P AG R++ G +EPH + G + G G
Sbjct: 293 MNPIGQGAG--------RANFPLGPGPEGPMAAMSAMEPHHVNG-----------SLGSG 333
Query: 240 TYRGAGPGAGSAPPGETPAPYTRR 263
G + A G + AP T R
Sbjct: 334 DMDGLPKSSPGAVAGLSNAPGTPR 357
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 47.4 bits (111), Expect = 2e-05
Identities = 92/359 (25%), Positives = 111/359 (30%), Gaps = 78/359 (21%)
Query: 32 PPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEAMGTGGCQGKVKFFLGIRERGRSS 91
PP AT P AA P PP PP G G +G G RG +
Sbjct: 870 PPGATGFPGAAGRVGPPGPSGNAGPPGPP---------GPAGKEG------GKGPRGETG 914
Query: 92 RKHQGPRELGRPPHPPRARSATLYPHPKLGSSLPFTP-------FRAMSTFPGVGAGDAL 144
+ P E+G PP PP P + P TP R + PG
Sbjct: 915 PAGR-PGEVG-PPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGF 972
Query: 145 PRLP----RAGTEAPGKGAREGTRRAPVRKPGLSAGAGIWDPNAVAAGPRPGRPGLRSHV 200
P LP G + P + E P+ PGL+ G R G PG
Sbjct: 973 PGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPG--------ESGREGAPG----- 1019
Query: 201 TRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGRGTYRGAGPGAGSAPPGETPAPY 260
+EG P R A +G T PGA AP P
Sbjct: 1020 ---------AEG----SPGRDGSPGAKGDRGE-------TGPAGPPGAPGAPGAPGPVGP 1059
Query: 261 TRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPADGFGAEEGPLAHLEERSEGWA 320
+SG R TG + G + P G ++G +R
Sbjct: 1060 AGKSGDRGE--------TGPAGPAGPVGPVGARGPAGP-QGPRGDKGETGEQGDRGIKGH 1110
Query: 321 STFLSAPGPQHPP------TPPACSGAATRREPPGNARQSRGVGA-GKPEPQRRP-PRG 371
F GP PP P SG A R PPG+A G G P P P PRG
Sbjct: 1111 RGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRG 1169
Score = 46.6 bits (109), Expect = 4e-05
Identities = 97/392 (24%), Positives = 119/392 (30%), Gaps = 74/392 (18%)
Query: 27 PRHPTPPHATLRPAAAPAHSPQSLQ-SLNAPPSPPRHPWTPEAMGTGGCQGKVKFFLGIR 85
P+ T P PA P Q L PP PP P P G GG + G
Sbjct: 113 PKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPP---GLGG-NFAPQLSYGYD 168
Query: 86 ERGRSSRKHQGPRELGRP---PHPPRARSATLYPHPKLGSSLPFTPFRAMSTFPGVGAGD 142
E+ GP P P PP A P P+ P P PG
Sbjct: 169 EKSTGGISVPGPMGPSGPRGLPGPPGA------PGPQGFQGPPGEPGE-----PGASG-- 215
Query: 143 ALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIWDPNAVAAGP-RPGRPGLRSHVT 201
P PR PGK +G KPG G P P G PG++ H
Sbjct: 216 --PMGPRGPPGPPGKNGDDGE----AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGH-- 267
Query: 202 RYMGYSSLSEGFRELEPHRMKGFTAH----------SPQGRWKNRGR-------GTYRGA 244
G+S L + P KG P+G RGR G
Sbjct: 268 --RGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGND 325
Query: 245 GPGAGSAPPGET----PAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPAD 300
G + PPG T P + G + + G + G V PA
Sbjct: 326 GATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQ-----GPRGSEGPQGVRGEPGPPGPAG 380
Query: 301 GFGAEEGPLAHLEERSEG--WASTFLSAPG---------PQHPPTPPACSGAATRREPPG 349
G P A + ++G A APG PQ P PP G + PG
Sbjct: 381 AAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPG 440
Query: 350 NARQSRGVGAGKPEPQRRPP-----RGSRAAR 376
+ + G P + PP G R AR
Sbjct: 441 SKGDTGAKGEPGPVGVQGPPGPAGEEGKRGAR 472
Score = 35.0 bits (79), Expect = 0.12
Identities = 100/408 (24%), Positives = 121/408 (29%), Gaps = 78/408 (19%)
Query: 27 PRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEAMGTGGCQGKVKFFLGIRE 86
P P+ P P AP PQ Q PP P P MG G G E
Sbjct: 180 PMGPSGPRGLPGPPGAPG--PQGFQG---PPGEPGEPGASGPMGPRGPPGPPGKNGDDGE 234
Query: 87 RGRSSRKHQGPRELGRPPHPPRARSATLYPHPKLGSSLPFTPFRAMSTFPGVGAGDALPR 146
G+ R P E G PP P AR P R S G GDA P
Sbjct: 235 AGKPGR----PGERG-PPGPQGARGL-----PGTAGLPGMKGHRGFSGLDGA-KGDAGPA 283
Query: 147 LPRAGTEAPGKGA---REGTRRAPVRK--PGLSAGAGIW--DPNAVAAGPR--------- 190
P+ +PG+ + G R P + PG AG D AAGP
Sbjct: 284 GPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPP 343
Query: 191 --PGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGRGTYRGAG--P 246
PG G + S EP A P G G+ +GA P
Sbjct: 344 GFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAP 403
Query: 247 GAGSAP-------------PGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACS 293
G AP PG P P P + + GD+ A G +
Sbjct: 404 GIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSK------GDTGAKGEPGPVGVQ 457
Query: 294 ARLSPAD-----GFGAEEGPLA---HLEERSEGWASTFLSA---------------PGPQ 330
PA G E GP ER + F A PGP
Sbjct: 458 GPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPA 517
Query: 331 HPPTPPACSGAATRREPPGNARQSRGVGAGKPEPQRRPPRGSRAARRP 378
P P +G PG + G+ P+ + PP + RP
Sbjct: 518 GPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRP 565
Score = 34.7 bits (78), Expect = 0.16
Identities = 83/312 (26%), Positives = 98/312 (31%), Gaps = 47/312 (15%)
Query: 57 PSPPRHPWTPEAMGTGGCQGKVKFFLGIRERGRSSRK-------HQGPRELGRPPHPPRA 109
P P P G G +G +RG + K G R L P PP
Sbjct: 715 PGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGP 774
Query: 110 RSATLYPHPK--LGSSLPFTPFRAMSTFPGVGAGDALPRLPRAGTEAPGKGAREGTRRAP 167
A P K G S P P A PG G+ P P PG + G + P
Sbjct: 775 AGA---PGDKGESGPSGPAGPTGARGA-PG-DRGEPGPPGPAGFAGPPGADGQPGAKGEP 829
Query: 168 VRKPGLSAGAGIWDPNAVAAGPRP----GRPGLRSHVTRYMGYSSLSEGFRELEPHRMKG 223
G AG P A P P G PG + + S G P G
Sbjct: 830 -GDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKG--------ARGSAG-----PPGATG 875
Query: 224 FTAHS----PQGRWKNRGR-GTYRGAGPGAGSAPPGET-PAPYTRRSGPRSRTWRRTWCW 277
F + P G N G G AG G P GET PA GP
Sbjct: 876 FPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGP----- 930
Query: 278 TGDSAAVGAAAVLACSARLSPADGFGAEEGPLAHLEERSEGWASTFLSAPGPQHPPTPPA 337
G+ + GA P G + G + +R E F PGP P
Sbjct: 931 AGEKGSPGADGPAGAPGTPGP-QGIAGQRGVVGLPGQRGE---RGFPGLPGPSGEPGKQG 986
Query: 338 CSGAATRREPPG 349
SGA+ R PPG
Sbjct: 987 PSGASGERGPPG 998
Score = 30.0 bits (66), Expect = 4.0
Identities = 95/400 (23%), Positives = 122/400 (30%), Gaps = 57/400 (14%)
Query: 10 RRAAQPAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEAM 69
+R A+ GP P P P + P A P+ P P +P
Sbjct: 468 KRGARGEPGPTGLPGP-PGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEA 526
Query: 70 GTGGCQGK--VKFFLGIRERGRSSRKHQGPRELGR-----PPHPPRARSATL---YPHPK 119
G G G K G K P G+ PP PP AR +P PK
Sbjct: 527 GRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPK 586
Query: 120 LGSSLPFTPF-RAMSTFPG-VGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGA 177
+ P R + PG VG G P A E + P PG
Sbjct: 587 GAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLP 646
Query: 178 GIWDPNAVAAGPRPGRPGLRSHVTRYMGYSSLSE----GFRELE----PHRMKGFTAHSP 229
G P A +PG G+ + + E G R ++ P +G A+
Sbjct: 647 GPAGPPGEAG--KPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRG--ANGA 702
Query: 230 QGRWKNRGRGTYRGAGPGAGSAP-----PGET-----PAPYTRR--SGPRSRTWRRTWCW 277
G +G GA PG+ AP PGE P P R +GP+
Sbjct: 703 PGNDGAKGDAGAPGA-PGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPK---------- 751
Query: 278 TGDSAAVGAAAVLACSARLSPADGFGA-----EEGPLAHLEERSEGWASTFLSAPGPQHP 332
G + G V + + P GA E GP A PGP P
Sbjct: 752 -GADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGP 810
Query: 333 ---PTPPACSGAATRREPPGNARQSRGVGAGKPEPQRRPP 369
PP G + PG+A G P PP
Sbjct: 811 AGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPP 850
>gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo
sapiens]
Length = 278
Score = 46.6 bits (109), Expect = 4e-05
Identities = 70/252 (27%), Positives = 85/252 (33%), Gaps = 59/252 (23%)
Query: 3 RLRRAIRRRAAQPAVGP--HAPPSAT------PRHPTPPHATLRPAAAPAHSPQSLQSLN 54
RL R RR GP AP ++ PR P P A P +P SL
Sbjct: 46 RLPRNGRRGPLWKGRGPAGRAPAASAETALPRPREPPEPGAGPSPKRSPPPRAPRASSL- 104
Query: 55 APPSPPRHPWTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATL 114
A P P WT GG G R R S + R PPRARS
Sbjct: 105 AAPEPQVGDWTSREGRRGG-----PCLPGARRRLFSL-------SVSRSSGPPRARSCA- 151
Query: 115 YPHPKLGSSLPFTPFRAMSTFPGVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLS 174
PHP G A R P AG G+GAR G+ AP R
Sbjct: 152 -PHP-------------------AREGMATTRGPEAGLRVSGRGARAGSSTAPTRAQASP 191
Query: 175 AGAGIWDPNAVAAGPRPGRP-GLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRW 233
A G P + + P P RS ++R + + G TA P +W
Sbjct: 192 ARPGF--PPCLRSPPCPASSRAFRSCLSRAKAWDT-------------AGQTAGQPSEKW 236
Query: 234 KNRGRGTYRGAG 245
+ GR +R G
Sbjct: 237 E-EGRKQWRKEG 247
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 46.6 bits (109), Expect = 4e-05
Identities = 86/371 (23%), Positives = 122/371 (32%), Gaps = 86/371 (23%)
Query: 55 APPSPPRHPWTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATL 114
+P PPR PW + + +R R + RK + R ++
Sbjct: 77 SPQPPPRRPWASRVLQEA-TNWRAGPLAEVRAREQEKRKAASQEREAKETERKRRKAGGA 135
Query: 115 YPHPKLGSSLPFTPFRAMSTFPGVGAGDALPRLPRAGTEAP-GKGAREGTRRAPVRKPGL 173
P P P P V LP R AP G+ R + P PG
Sbjct: 136 RRSP------PGRPRPEPRNAPRVAQLAGLPAPLRPERLAPVGRAPRPSAQ--PQSDPG- 186
Query: 174 SAGAGIWDPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRW 233
SA AG W G RPG P +H+ ++G +P+ RW
Sbjct: 187 SAWAGPW------GGRRPGPPSYEAHLL-------------------LRGSAGTAPRRRW 221
Query: 234 K--------------NRGRGTYRGAGPGAGSAPPGETPAPYTRRS-GPRSRTWRRTWCWT 278
+R GT RG PG P PA R+ G R++ +
Sbjct: 222 DRPPPYVAPPSYEGPHRTLGTKRG--PGNSQVPTSSAPAATPARTDGGRTKKRLDPRIYR 279
Query: 279 GDSAAVGAAAVLACSARLSPADGFGAEEG---PLAHLEERSEGWASTFLSAPGPQHPPTP 335
+GA + L + G GA P + E+S G A+ L++ HP
Sbjct: 280 D---VLGAWGLRQGQGLLGGSPGCGAARARPEPGKGVVEKSLGLAAADLNSGSDSHPQAK 336
Query: 336 PACSGAATRREPPGNARQS--------------RGVGAGK------------PEPQRRPP 369
A A T P G+A + +G GK P P+++PP
Sbjct: 337 -ATGSAGTEIAPAGSATAAPCAPHPAPRSRHHLKGSREGKEGEQIWFPKCWIPSPKKQPP 395
Query: 370 RGSRAARRPRA 380
R S+ RP A
Sbjct: 396 RHSQTLPRPWA 406
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 46.2 bits (108), Expect = 5e-05
Identities = 90/359 (25%), Positives = 110/359 (30%), Gaps = 69/359 (19%)
Query: 23 PSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPP--RHPWTPEAMGTGGCQGKV-- 78
P A PR L+P + +P S P P R P + G +G
Sbjct: 61 PEAQPRQARD--GELKPPSLRGQAPSSTPGKRGSPQTPPGRSPLQAPSRLAGRAEGSPPQ 118
Query: 79 KFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPHPKLGSSLPFTPFRAMSTFPGV 138
++ LGI SSR L P P+ +A L + T G
Sbjct: 119 RYILGIA----SSRTKP---TLDETPENPQLEAAQL---------------PEVDTPQGP 156
Query: 139 GAGDAL-PRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIWDPNAVAAGPRPGRPGLR 197
G G L P LPR TEA G R P P+A P PG P
Sbjct: 157 GTGAPLRPGLPR--TEAQPAAEELGFHRCFQEPPSSFTSTNYTSPSATPRPPAPGPP--- 211
Query: 198 SHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGRGTYRGAGPGAGSAPPGETP 257
S G L+P + A S W ++ GA G A P P
Sbjct: 212 -----------QSRGTSPLQPGSYPEYQA-SGADSWPPAAENSFPGANFGVPPAEP--EP 257
Query: 258 APYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPAD--GFGAEEGPLAHLEER 315
P R G R G S A+ S + PAD G GPL +
Sbjct: 258 IPKGSRPGGSPR---------GVSFQFPFPALHGASTKPFPADVAGHAFTNGPLVFAFHQ 308
Query: 316 SEGWASTFLSAPGPQHP-PTPPACS---------GAATRREPPGNARQSRGVGAGKPEP 364
+G GP +P PT PA S G R A S G P P
Sbjct: 309 PQGAWPEEAVGTGPAYPLPTQPAPSPLPCYQGQPGGLNRHSDLSGALSSPGAAHSAPRP 367
Score = 44.7 bits (104), Expect = 2e-04
Identities = 101/411 (24%), Positives = 139/411 (33%), Gaps = 79/411 (19%)
Query: 13 AQPAVGPHAPPSATPRHPTPPHATLRPAAAPAHSP--QSLQSLNAPPSPPRHPWTPEAMG 70
AQP V PH PS P + P +PA + + SL+ S P +P + E+
Sbjct: 566 AQPQVSPHGTPSLPPPRVVGASPSESPLPSPATNTAGSTCSSLSPMSSSPANPSSEESQ- 624
Query: 71 TGGCQGKVKFFLGIRERGRSSRKHQGPRELGRP-PHPPRARSATLYPHPKLGSSLPFTPF 129
G G FF P+E G P P P S + P+ + PF
Sbjct: 625 LPGPLGPSAFF----------HPPTHPQETGSPFPSPEPPHSLPTHYQPEPAKAFPFPA- 673
Query: 130 RAMSTFPGVGAGDALPRL-----PRAGTEAPGKGAREGTRRAPVRKP--GLSAGAGIWDP 182
G+GA A L P G E G+G +G RAP P S + D
Sbjct: 674 ------DGLGAEGAFQCLEETPFPHEGPEV-GRGGLQGFPRAPPPYPTHHFSLSSASLDQ 726
Query: 183 NAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSP-QGRWKNRGR-GT 240
V R YSSL+ F AH G R + G
Sbjct: 727 LDVLLTCRQCD----------RNYSSLA------------AFLAHRQFCGLLLARAKDGH 764
Query: 241 YRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAA--------VGAAAVLAC 292
R GP +PP P +G S +T+ GD+ A G LA
Sbjct: 765 QRSPGPPGLPSPPAAPRVPADAHAGLLSHA--KTFLLAGDAQAEGKDDPLRTGFLPSLAA 822
Query: 293 SARLSPADGFGAEEG---------PLAHLEERSEG--WASTFLSAPGPQHPPTPPACSGA 341
+ PA E+ L +E +S+ S+F+ + P P S
Sbjct: 823 TPFPLPASDLDMEDDAKLDSLITEALNGMEYQSDNPEIDSSFIDVFADEEPSGPRGPSSG 882
Query: 342 ATRREPPGNARQSRG---VGAGKPEPQRRPP--RGSRAARRPRARRVFTDP 387
+ G +S+ + A P+PQ P RG A RP+ R + P
Sbjct: 883 HPLKSKAGVTPESKAPPPLPAATPDPQTPRPGDRGCPARGRPKTRSLGLAP 933
Score = 42.7 bits (99), Expect = 6e-04
Identities = 80/318 (25%), Positives = 104/318 (32%), Gaps = 70/318 (22%)
Query: 106 PPRARSATLYPHPKLGSSLPFTPFRAMSTFPGVGAGDALPRLPRAGTEAPGKGAREGTRR 165
PP + ++T Y P S+ P P G P P + E GA
Sbjct: 187 PPSSFTSTNYTSP---SATPRPPAPGPPQSRGTS-----PLQPGSYPEYQASGADSWPPA 238
Query: 166 APVRKPGLSAGAGIWDPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKG-- 223
A PG + G +P + G RPG G V+ + +L + P + G
Sbjct: 239 AENSFPGANFGVPPAEPEPIPKGSRPG--GSPRGVSFQFPFPALHGASTKPFPADVAGHA 296
Query: 224 -------FTAHSPQGRWKNRGRGTYRGAGPGAGSAPPGETPAP---YTRRSGPRSRTWRR 273
F H PQG W GT GP A P P+P Y + G +R
Sbjct: 297 FTNGPLVFAFHQPQGAWPEEAVGT----GP-AYPLPTQPAPSPLPCYQGQPGGLNRHSDL 351
Query: 274 TWCWTGDSAAVGAAAVLACSARL-----------SPADGFGAEEGPLAHLEER------- 315
+ + AA A + S S DG G+ GP + L +R
Sbjct: 352 SGALSSPGAAHSAPRPFSDSLHKSLTKILPERPPSAQDGLGSTRGPPSSLPQRHFPGQAY 411
Query: 316 -------SEGWASTFLSAPGPQHP-------------PTPPACSGAATRR-----EPPGN 350
S G T L+APGP PTPP AATR +P
Sbjct: 412 RASGVDTSPGPPDTELAAPGPPPARLPQLWDPTAAPYPTPPGGPLAATRSMFFNGQPSPG 471
Query: 351 ARQSRGVGAGKPEPQRRP 368
R A P PQ P
Sbjct: 472 QRLCLPQSAPLPWPQVLP 489
Score = 30.4 bits (67), Expect = 3.0
Identities = 34/128 (26%), Positives = 45/128 (35%), Gaps = 25/128 (19%)
Query: 18 GPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEAM-------- 69
GP + S +PR T +P A + A PS P PE +
Sbjct: 3701 GPSSQGSGSPRPGTKTGGGSQPQPASGQLQSETATTPAKPSFPSRSPAPERLPARAQAKS 3760
Query: 70 --------GTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPH-PKL 120
G G G LG +E+G SS K R+ G+ P P R+ S + P
Sbjct: 3761 CTKGPREAGEQGPHGS----LGPKEKGESSTK----RKKGQVPGPARSESVGSFGRAPSA 3812
Query: 121 GSSLPFTP 128
P TP
Sbjct: 3813 PDKPPRTP 3820
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 45.8 bits (107), Expect = 7e-05
Identities = 56/205 (27%), Positives = 69/205 (33%), Gaps = 41/205 (20%)
Query: 2 QRLRRAIRRRAAQPAVGPHAPPSATPRHPTPPHATL--------RPAAAPAHSPQSLQSL 53
+ L A + A+ A PPS R P PP L P AP S
Sbjct: 544 KELEDAKKEMASLSAAAITVPPSVPSRAPVPPAPPLPGDSGTIIPPPPAPGDS------- 596
Query: 54 NAPPSPPRHPWTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSAT 113
PP PP P P + G C S P P PP + AT
Sbjct: 597 TTPPPPPPPPPPPPPLPGGVC---------------ISSPPSLPGGTAISPPPPLSGDAT 641
Query: 114 LYPHPKL--GSSLPFTPFRAMSTFPGVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKP 171
+ P P L G +P + S+ PG A P LP + P G+ P P
Sbjct: 642 IPPPPPLPEGVGIP-----SPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPP 696
Query: 172 GLSAGAGIWDPNAVAAGPRPGRPGL 196
L AG+ P P PG PG+
Sbjct: 697 PLPGEAGMPPP----PPPLPGGPGI 717
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 45.8 bits (107), Expect = 7e-05
Identities = 56/205 (27%), Positives = 69/205 (33%), Gaps = 41/205 (20%)
Query: 2 QRLRRAIRRRAAQPAVGPHAPPSATPRHPTPPHATL--------RPAAAPAHSPQSLQSL 53
+ L A + A+ A PPS R P PP L P AP S
Sbjct: 553 KELEDAKKEMASLSAAAITVPPSVPSRAPVPPAPPLPGDSGTIIPPPPAPGDS------- 605
Query: 54 NAPPSPPRHPWTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSAT 113
PP PP P P + G C S P P PP + AT
Sbjct: 606 TTPPPPPPPPPPPPPLPGGVC---------------ISSPPSLPGGTAISPPPPLSGDAT 650
Query: 114 LYPHPKL--GSSLPFTPFRAMSTFPGVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKP 171
+ P P L G +P + S+ PG A P LP + P G+ P P
Sbjct: 651 IPPPPPLPEGVGIP-----SPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPP 705
Query: 172 GLSAGAGIWDPNAVAAGPRPGRPGL 196
L AG+ P P PG PG+
Sbjct: 706 PLPGEAGMPPP----PPPLPGGPGI 726
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 45.8 bits (107), Expect = 7e-05
Identities = 80/291 (27%), Positives = 99/291 (34%), Gaps = 51/291 (17%)
Query: 102 RPPHPPRARSATLYPHPKLGSSLPFTPFRAMSTFPGVGAGDALPRLPRAGTEAPGKGARE 161
R P A + L H GS P A P GA A P P AG PG G +
Sbjct: 46 RTPEVRAAAAGALGNHVVSGS--PAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQ 103
Query: 162 GTRRAPVRKPGLSAGAGIWDPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRM 221
R+P + AG P AA RP G ++++ G EP
Sbjct: 104 RPGPPSPRRPLVPAG-----PAPPAAKLRPPPEGSAGSCAPVPAAAAVAAG---PEP--- 152
Query: 222 KGFTAHSPQGRWKNRGRGTYRG-AGPGAGSAP-PGETPAPYTRRSGPRSRTWRRTWCWTG 279
+P G K G AGPG G P PG P P + +GP +
Sbjct: 153 ------APAGPAKPAGPAALAARAGPGPGPGPGPGPGPGP-GKPAGPGAA---------- 195
Query: 280 DSAAVGAAAVLACSARLSPADGFGAEEGPLAHLEERSEGWASTFLSAP---GPQHPPTP- 335
G+AA+L +PA GP A L T + P G PP P
Sbjct: 196 -QTLNGSAALLNSHHAAAPAVSL-VNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPA 253
Query: 336 ---------PACSGAATRREPPGNARQSRGVG--AGKP--EPQRRPPRGSR 373
PA AA PP A +R G AG P P PP ++
Sbjct: 254 APSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQ 304
Score = 37.7 bits (86), Expect = 0.019
Identities = 28/71 (39%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 15 PAVGPHAPPSATPRHPTPP--HATLRPAAAPAHSPQSLQSLNAPPSPPRHPWT------- 65
P VG APP+ P P+PP A PAAAP P + +L PP P P T
Sbjct: 242 PFVGAAAPPA--PAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPP 299
Query: 66 PEAMGTGGCQG 76
P A GG G
Sbjct: 300 PAAAQNGGSAG 310
Score = 33.5 bits (75), Expect = 0.36
Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Query: 13 AQPAVGPHAPPSAT------PRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTP 66
A PA P PP A P HP P T PA P + Q+ S A P+P P
Sbjct: 264 AAPAAAPPPPPPAPATLARPPGHPAGP-PTAAPAVPPPAAAQNGGSAGAAPAP-----AP 317
Query: 67 EAMGTGGCQGK 77
A G G G+
Sbjct: 318 AAGGPAGVSGQ 328
Score = 31.2 bits (69), Expect = 1.8
Identities = 60/227 (26%), Positives = 72/227 (31%), Gaps = 66/227 (29%)
Query: 11 RAAQPAVGPHAPPSATPRH------PTPPHATLRP-------AAAPAHSPQSLQSLNAP- 56
RA GP P +PR P PP A LRP + AP + ++ + P
Sbjct: 94 RARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPA 153
Query: 57 PSPPRHPWTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARS----- 111
P+ P P P A+ G G GP G+P P A++
Sbjct: 154 PAGPAKPAGPAALAARAGPGP----------GPGPGPGPGPGP-GKPAGPGAAQTLNGSA 202
Query: 112 --------------------ATLYPHPKLGSSLPFTPFRAMSTFPGVGA----GDALPRL 147
A L P PK P P + T P VGA A P
Sbjct: 203 ALLNSHHAAAPAVSLVNNGPAALLPLPK-----PAAPGTVIQTPPFVGAAAPPAPAAPSP 257
Query: 148 PRAGTEAPGKGAREGTRRAP---VRKPGLSAGAGIWDPNAVAAGPRP 191
P A A A AP R PG AG P A A P P
Sbjct: 258 PAAPAPAAPAAAPPPPPPAPATLARPPGHPAG----PPTAAPAVPPP 300
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 45.8 bits (107), Expect = 7e-05
Identities = 76/304 (25%), Positives = 99/304 (32%), Gaps = 46/304 (15%)
Query: 136 PGVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAG--------IWDPNAVAA 187
PG GAG P P G + P GA T PV PG G G DP
Sbjct: 29 PGPGAGKP-PSAPAGGGQLPAAGAARSTAVPPVPGPGPGPGPGPGPGSTSRRLDPKEPLG 87
Query: 188 GPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGRGTYRGAGPG 247
R P + G+ E RE G A P+ + R G P
Sbjct: 88 NQRAASPTPKQASATTPGH----ESPRETRAQGPAGQEADGPRRTLQVDSRTQRSGRSPS 143
Query: 248 AGSAPPGETP-APYT-RRSGPRSRTWRRTWCWTGDSAAVGAA----AVLACSARLSPADG 301
S G TP +PY+ + P + C T D + + C ++ G
Sbjct: 144 V-SPDRGSTPTSPYSVPQIAPLPSSTLCPICKTSDLTSTPSQPNFNTCTQCHNKVCNQCG 202
Query: 302 FGAEEGPLAHLE------------ERSEGWASTFLSAPGPQHPPTPPACSGA-ATRREPP 348
F P HL +R+ G T Q PA S A + ++P
Sbjct: 203 F----NPNPHLTQVKEWLCLNCQMQRALGMDMTTAPRSKSQQQLHSPALSPAHSPAKQPL 258
Query: 349 GNARQSRGVGAGKPEPQRRP---------PRGSRAARRPRARRVFTDPRRHTRHRTRRSV 399
G Q R G G P+P R P ++AA P RV P + T+ T
Sbjct: 259 GKPDQERSRGPGGPQPGSRQAETARATSVPGPAQAAAPPEVGRVSPQPPQPTKPSTAEPR 318
Query: 400 APPG 403
P G
Sbjct: 319 PPAG 322
Score = 34.7 bits (78), Expect = 0.16
Identities = 48/183 (26%), Positives = 53/183 (28%), Gaps = 39/183 (21%)
Query: 237 GRGTYRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARL 296
G G G GPG G+ P PA G A GAA A
Sbjct: 20 GAGPGPGPGPGPGAGKPPSAPA------------------GGGQLPAAGAARSTAVPPVP 61
Query: 297 SPADGFGAEEGPLAHLEERSEGWASTFLSAPGP-----QHPPTPPACSGAATRREPPGNA 351
P G G GP G S L P PTP S E P
Sbjct: 62 GPGPGPGPGPGP---------GSTSRRLDPKEPLGNQRAASPTPKQASATTPGHESPRET 112
Query: 352 RQSRGVGAGKPEPQRRPPRGSRAARRPRARRVFTDPRRHTRHRTRRSV-----APPGCFC 406
R G P+R SR R R+ V P R + + SV P C
Sbjct: 113 RAQGPAGQEADGPRRTLQVDSRTQRSGRSPSV--SPDRGSTPTSPYSVPQIAPLPSSTLC 170
Query: 407 PAC 409
P C
Sbjct: 171 PIC 173
Score = 32.3 bits (72), Expect = 0.80
Identities = 88/387 (22%), Positives = 126/387 (32%), Gaps = 95/387 (24%)
Query: 39 PAAAPAHSPQSLQSLNAPPSP-PRHPWTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGP 97
PA +PAHSP + Q L P R P P+ G Q + + +++ P
Sbjct: 245 PALSPAHSP-AKQPLGKPDQERSRGPGGPQ---PGSRQAETARATSVPGPAQAA----AP 296
Query: 98 RELGR-PPHPPR-ARSATLYPHPKLGSSLPFTPFRAMSTFP------------------G 137
E+GR P PP+ + +T P P G + P ++ + P G
Sbjct: 297 PEVGRVSPQPPQPTKPSTAEPRPPAGEA----PAKSATAVPAGLGATEQTQEGLTGKLFG 352
Query: 138 VGAG---------DALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIWDPNAVAAG 188
+GA P G AP K GT + AG P + +G
Sbjct: 353 LGASLLTQASTLMSVQPEADTQGQPAPSK----GTPKIVFNDASKEAG-----PKPLGSG 403
Query: 189 PRPG-RPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGRGTYRGAGPG 247
P PG PG ++ MG S + G T GR +++
Sbjct: 404 PGPGPAPGAKTEPGARMGPGSGPGALPK------TGGTTSPKHGRAEHQ----------A 447
Query: 248 AGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPADGFGAEEG 307
A A P R P + G + C ++ GF
Sbjct: 448 ASKAAAKPKTMPKERAICPLCQAELN----VGSKSPANYNTCTTCRLQVCNLCGF----N 499
Query: 308 PLAHLEERSEGW----------ASTFLSAPGPQHPPT---PPACSGAATRREPPGNARQS 354
P HL E++E W L P P PPT PP GA R +Q
Sbjct: 500 PTPHLVEKTE-WLCLNCQTKRLLEGSLGEPTPLPPPTSQQPPV--GAPHRASGTSPLKQK 556
Query: 355 RGVGAGKPE---PQRRPPRGSRAARRP 378
G G+P P + P ++A+ P
Sbjct: 557 GPQGLGQPSGPLPAKASPLSTKASPLP 583
Score = 30.4 bits (67), Expect = 3.0
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 19/194 (9%)
Query: 86 ERGRSSRKHQGPRELGRPPHPPRARSATLY---PHPKLGSSLPFTPFRAMSTFPGVGAGD 142
+ GR S +H G E GR P AR + PH + SS P P + +P
Sbjct: 3649 DHGRHSGRHTG-EEPGRRAAKPHARDLGRHEARPHSQ-PSSAPAMPKKGQPGYPSSAEYS 3706
Query: 143 ALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIW-DPNAVAAGPRPGRPGLRSHVT 201
R A A +++G+R+A L + A P PG +S +
Sbjct: 3707 QPSRASSAYHHA--SDSKKGSRQAHSGPAALQSKAEPQAQPQLQGRQAAPGPQQSQSPSS 3764
Query: 202 RYMGYSSLSEGFRELEPHRMKGFTAHSPQ-----GRWKNRGRGTYRGAGPG----AGSAP 252
R + + S + + +G PQ R + + + T RG+ P AG
Sbjct: 3765 RQIPSGAASR--QPQTQQQQQGLGLQPPQQALTQARLQQQSQPTTRGSAPAASQPAGKPQ 3822
Query: 253 PGETPAPYTRRSGP 266
PG + A + +GP
Sbjct: 3823 PGPSTATGPQPAGP 3836
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 45.8 bits (107), Expect = 7e-05
Identities = 48/164 (29%), Positives = 62/164 (37%), Gaps = 20/164 (12%)
Query: 245 GPGAGSAPPGETPAPYTRRSG--PRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPADGF 302
G + PP P P RR+ PR+ T R A AA AR P+
Sbjct: 1511 GNDSDEEPPAAAPTPTHRRTSAIPRAFTRERPQGRKEAPAPSKAAPAAPPPARTQPS--L 1568
Query: 303 GAEEGPLAHLEERSEGWASTFLSAPGPQHPPT--PPACSGAATRREPPGNARQSRGVGAG 360
A+E P + S +++ LS P P PP P A T+ PG R S
Sbjct: 1569 IADETPPCY----SLSSSASSLSEPEPSEPPAVHPRGREPAVTKDPGPGGGRDSSPSPRA 1624
Query: 361 KPE----------PQRRPPRGSRAARRPRARRVFTDPRRHTRHR 394
E P+RRPP R+PRA R+ P +R R
Sbjct: 1625 AEELLQRCISSALPRRRPPVSGLRRRKPRATRLDERPAEGSRER 1668
Score = 35.8 bits (81), Expect = 0.073
Identities = 80/319 (25%), Positives = 99/319 (31%), Gaps = 98/319 (30%)
Query: 15 PAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEAMGTGGC 74
P+ P A P TP P AT R A P L P +P + P +
Sbjct: 1797 PSPAPRAQPKGTPG----PRATPRKVAPPC--------LAQPAAPAKVPSPGQ------- 1837
Query: 75 QGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARS--ATLYPHPKLGSSL-------- 124
+R RS + EL PPR+ + A L P SS
Sbjct: 1838 -----------QRSRSLHRPAKTSELATLSQPPRSATPPARLAKTPSSSSSQTSPASQPL 1886
Query: 125 -----PFTPFRAMSTFPGVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGI 179
P T +A PG GA +P+ P A + T+R+PVR P + A
Sbjct: 1887 PRKRPPVT--QAAGALPGPGASP-VPKTPARTLLAK----QHKTQRSPVRIPFMQRPARR 1939
Query: 180 WDPNAVAAGPRP----------------GRPGL---------------RSHVTRYMGYSS 208
P A P P GR GL RS R + +
Sbjct: 1940 GPPPLARAVPEPGPRGRAGTEAGPGARGGRLGLVRVASALSSGSESSDRSGFRRQLTFIK 1999
Query: 209 LSEGFRELEPHRMKGFTAHS-PQGRWKNRGRGTYRG------------AGPGAGSAPPGE 255
S G R +A S PQG RGR A P G AP +
Sbjct: 2000 ESPGLRRRRSELSSAESAASAPQGASPRRGRPALPAVFLCSSRCEELRAAPRQGPAPARQ 2059
Query: 256 TPAPYTRRSGPRSRTWRRT 274
P R P R RRT
Sbjct: 2060 RPP--AARPSPGERPARRT 2076
Score = 33.1 bits (74), Expect = 0.47
Identities = 106/428 (24%), Positives = 145/428 (33%), Gaps = 67/428 (15%)
Query: 9 RRRAAQPAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEA 68
RR +A P P P P A PAA P Q SL A +PP + + A
Sbjct: 1528 RRTSAIPRAFTRERPQGRKEAPAPSKAA--PAAPPPARTQP--SLIADETPPCYSLSSSA 1583
Query: 69 MGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPHPKLGSSLPFTP 128
+ + RGR + P G P R+A + S+LP
Sbjct: 1584 SSLSEPEPSEP--PAVHPRGREPAVTKDPGPGGGRDSSPSPRAAEELLQRCISSALP--- 1638
Query: 129 FRAMSTFPGVGAGDALPRLPRAGTEAPGKGARE------GTRRAP----VRKPGLSAGAG 178
P G PR R E P +G+RE G+ RA V + GA
Sbjct: 1639 ---RRRPPVSGLRRRKPRATRLD-ERPAEGSRERGEEAAGSDRASDLDSVEWRAIQEGAN 1694
Query: 179 ---IWDPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKN 235
W A AA R + S LS G P KG A G +
Sbjct: 1695 SIVTWLHQAAAAT----REASSESDSILSFVSGLSVGSTLQPPKHRKGRQAEGEMGSAR- 1749
Query: 236 RGRGTYRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSAR 295
R RGA S P +PA + G + T G A + V+ +
Sbjct: 1750 --RPEKRGAASVKTSGSP-RSPAGPEKPRGTQKTT-------PGVPAVLRGRTVIYVPSP 1799
Query: 296 LSPADGFGAEEGPLAHLEE-----RSEGWASTFLSAPGPQHPPT---PPACSGAATRREP 347
A G GP A + ++ A + +PG Q + P S AT +P
Sbjct: 1800 APRAQPKGTP-GPRATPRKVAPPCLAQPAAPAKVPSPGQQRSRSLHRPAKTSELATLSQP 1858
Query: 348 PGNAR------------QSRGVGAGKPEPQRRPP--RGSRAARRPRARRVFTDPRR---H 390
P +A S+ A +P P++RPP + + A P A V P R
Sbjct: 1859 PRSATPPARLAKTPSSSSSQTSPASQPLPRKRPPVTQAAGALPGPGASPVPKTPARTLLA 1918
Query: 391 TRHRTRRS 398
+H+T+RS
Sbjct: 1919 KQHKTQRS 1926
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 45.4 bits (106), Expect = 9e-05
Identities = 103/421 (24%), Positives = 133/421 (31%), Gaps = 66/421 (15%)
Query: 1 MQRLRRAIRRRAAQPAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPP 60
M R + AA AP TPR P P RP P +P +L+ L A +
Sbjct: 1 MDNKRDKAKAGAAARTPAARAPGLLTPRPPGSP----RPP--PPVTPAALRVLGAAGAVG 54
Query: 61 RHPWTPEAMGTGGCQ--GKVKFFLGIRERGRSSRKHQG-PRELGRPPHPPRARSATLYPH 117
R P A G GG R G SSR P GR P A++ + P
Sbjct: 55 RKPLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPV 114
Query: 118 PKLGSSLPFT-------PFRAMSTFPGVGAGDALPRLPR----AGTEAPGKGAREGTRRA 166
G + T +S V G A R AG G GT
Sbjct: 115 SSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSP 174
Query: 167 PVRKPGLSAGAGIWDPN-AVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFT 225
+ + +AG + P A +A PRP G R V+ +S+ T
Sbjct: 175 AMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHST----------------T 218
Query: 226 AHSPQGRWK-NRGRGTYRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAV 284
SP R + + G G R P + S TP RSGP +R R
Sbjct: 219 EPSPAARRRPSAGGGLQR---PASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPK 275
Query: 285 GAAAVL---ACSARLSPADGFG-------AEEGPLAHLEERS---------EGWASTFLS 325
G A+ R A G A P A L+ ++ + L+
Sbjct: 276 GLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLA 335
Query: 326 APGPQHPPTPPACSGAATRREPPGNARQSRGVGAGKPEPQR------RPPRGSRAARRPR 379
P P PP+P A T PP G P Q PP A P+
Sbjct: 336 TPLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQ 395
Query: 380 A 380
A
Sbjct: 396 A 396
Score = 45.1 bits (105), Expect = 1e-04
Identities = 80/355 (22%), Positives = 109/355 (30%), Gaps = 61/355 (17%)
Query: 15 PAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEAMGTGGC 74
P P PSATP PP P P SP + ++ +PP P P +
Sbjct: 454 PPASPPVSPSATPPSQAPPSLAAPPLQVPP-SPPASPPMSPSATPP--PQAPPPLAAPPL 510
Query: 75 QGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPHPKLGSSLPFTPFRAMST 134
Q + Q P L PP A P PF+P ++
Sbjct: 511 Q-------------LAKPPPQAPPALATPP-----LQALPSPPASFPGQAPFSPSASLPM 552
Query: 135 FP-GVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIWDPN-AVAAGPRPG 192
P A P L + P T +AP R P + P +A P P
Sbjct: 553 SPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPP 612
Query: 193 RPGLRSHVTRYMGYSSLSEGFRELE-PHRMKGFTAHSPQGRWKNRGRGTYRGAGPGAGSA 251
P RS + G P ++G+ + P+G GA ++
Sbjct: 613 PPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDS-GPEG---------------GAAAS 656
Query: 252 PPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPADGFGAEEGPLAH 311
PP P + W R G + + PA G G+ +G
Sbjct: 657 PP-----PDAELAACHPAAWSR-----GPAPPLAFRGAPGAPLPWPPATGPGSADGLCTI 706
Query: 312 LEERSEGWASTFLSAPGPQHPPTPPACSGAATRREPPGNARQSRGVGAGKPEPQR 366
E +EG S APG P P SG G A G GA P++
Sbjct: 707 YE--TEGPESA-TPAPGALDPGPSPGTSG--------GKAAAGAGAGASSRSPKQ 750
Score = 43.1 bits (100), Expect = 5e-04
Identities = 80/366 (21%), Positives = 115/366 (31%), Gaps = 76/366 (20%)
Query: 15 PAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQS--LNAPPSPPRHP-WTPEAMGT 71
P P +PP++ P P+ A P+ +P SL + L PPSPP P +P A
Sbjct: 447 PVQAPFSPPASPPVSPS--------ATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPP 498
Query: 72 GGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPH--PPRARSATLYPHPKLGSSLP---- 125
+ P +L +PP PP + L P +S P
Sbjct: 499 PQAPPPLA---------------APPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAP 543
Query: 126 FTPFRAMSTFP-GVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIWDPN- 183
F+P ++ P A P L + P T +AP R P + P
Sbjct: 544 FSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRL 603
Query: 184 AVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELE-PHRMKGFTAHSPQGRWKNRGRGTYR 242
+A P P P RS + G P ++G+ + P+G
Sbjct: 604 TLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDS-GPEG----------- 651
Query: 243 GAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPADGF 302
GA ++PP P + W R G + + PA G
Sbjct: 652 ----GAAASPP-----PDAELAACHPAAWSR-----GPAPPLAFRGAPGAPLPWPPATGP 697
Query: 303 GAEEGPLAHLEERSEGWASTFLSAPGPQHPPTPPACSGAATRREPPGNARQSRGVGAGKP 362
G+ +G T GP+ P GA PG + GAG
Sbjct: 698 GSADG------------LCTIYETEGPESATPAP---GALDPGPSPGTSGGKAAAGAGAG 742
Query: 363 EPQRRP 368
R P
Sbjct: 743 ASSRSP 748
Score = 33.9 bits (76), Expect = 0.28
Identities = 70/259 (27%), Positives = 83/259 (32%), Gaps = 77/259 (29%)
Query: 12 AAQPAVGPHAPPSATPRHPTPPHATL--RPAAAPAHSPQSLQS----------------- 52
AA P PP A P TPP L PA+ P +P S +
Sbjct: 506 AAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPV 565
Query: 53 -----LNAPPSPPRHP--WTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPR-----EL 100
L PPSPP P P T G V GPR
Sbjct: 566 LAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSV----------------SGPRLTLALAP 609
Query: 101 GRPPHPPRARSATLYPHPKLG--SSLPFTP--FRAMSTFPGVGAGDALPR-------LPR 149
G PP P R+ S+TL G SS TP R + P GA + P P
Sbjct: 610 GPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPA 669
Query: 150 AGTEAPGKG-AREGTRRAPVRKPGLSAGAGIWD-----------------PNAVAAGPRP 191
A + P A G AP+ P + G G D P A+ GP P
Sbjct: 670 AWSRGPAPPLAFRGAPGAPLPWPP-ATGPGSADGLCTIYETEGPESATPAPGALDPGPSP 728
Query: 192 GRPGLRSHVTRYMGYSSLS 210
G G ++ G SS S
Sbjct: 729 GTSGGKAAAGAGAGASSRS 747
Score = 30.4 bits (67), Expect = 3.0
Identities = 16/48 (33%), Positives = 18/48 (37%)
Query: 340 GAATRREPPGNARQSRGVGAGKPEPQRRPPRGSRAARRPRARRVFTDP 387
G AT E A +R G P RPP R R P A+ P
Sbjct: 66 GGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGP 113
Score = 29.6 bits (65), Expect = 5.2
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 320 ASTFLSAPGPQHPPTPPACSGAATRREPP--------GNARQSRGVGAGKPEPQRRPP 369
A L+AP Q PP+PPA R PP R + + G P P R P
Sbjct: 562 APPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSP 619
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 45.4 bits (106), Expect = 9e-05
Identities = 95/403 (23%), Positives = 141/403 (34%), Gaps = 54/403 (13%)
Query: 16 AVGPHAPPSATP------RHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEAM 69
+V PP + P P P +PA SP+S+++ + P P + PE +
Sbjct: 181 SVSSPEPPKSVPVCESQKLAPVPSPEPQKPAPV---SPESVKATLSNPKPQKQSHFPETL 237
Query: 70 GTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPHPKLGSSL----P 125
G L +S + GP P AR T P P+ S P
Sbjct: 238 GPPSASSPESPVLA------ASPEPWGPSPAASPESRKSAR--TTSPEPRKPSPSESPEP 289
Query: 126 FTPFRAMS-----TFPGVGAGDALPRLPRAGTEAPGKGAREGTRRAPVR--KPGLSAGAG 178
+ PF A+S P V G P P G+ P K + P + KP S G
Sbjct: 290 WKPFPAVSPEPRRPAPAVSPGSWKPGPP--GSPRPWK-SNPSASSGPWKPAKPAPSVSPG 346
Query: 179 IWDP-NAVAAGPRPGRPGLRSHVTRYMGYSSLS--------EGFRELEPHRMKGFTAHSP 229
W P +V+ GP P + S + S S E ++ P K SP
Sbjct: 347 PWKPIPSVSPGPWKPTPSVSSASWKSSSVSPSSWKSPPASPESWKSGPPELRKTAPTLSP 406
Query: 230 QGRWKNRGRGTYRGAGPGAGSAPPGETPA--PYTRRSGPRSRTWRRTWCWTGDSAAVGAA 287
+ WK + PG +P +PA P R+ W+ + D A
Sbjct: 407 E-HWKAVPPVSPELRKPGPPLSPEIRSPAGSPELRKPSGSPDLWK----LSPDQRKTSPA 461
Query: 288 AVLACSARLSPADGFGAEEGPLAHLEERSEGWASTFLSAPGPQHPPTPPACSGAATRREP 347
++ ++ S G +E + + T PGP P P A+ +P
Sbjct: 462 SLDFPESQKSSRGGSPDLWKSSFFIEPQKPVFPET--RKPGPSGPSESP--KAASDIWKP 517
Query: 348 PGNARQSRGVGAGKPEPQRRPPRGSRAARRPRARRVFTDPRRH 390
+ A PEP + P S AR+ R +F +PR+H
Sbjct: 518 VLSIDTEPRKPALFPEPAKTAPPASPEARK---RALFPEPRKH 557
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 45.4 bits (106), Expect = 9e-05
Identities = 69/282 (24%), Positives = 105/282 (37%), Gaps = 45/282 (15%)
Query: 3 RLRRAIRRRAAQPAVGPH----APPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPS 58
R RR R+A P+ +P R P+PP R + +PA P+ ++ P+
Sbjct: 519 RRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRT----PT 574
Query: 59 PPRHPWTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGP-RELGRPPHPPRARSATLYPH 117
PP TP R R S R++ P + P PP+ R+A+ P
Sbjct: 575 PPPRRRTPSPPP--------------RRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPP 620
Query: 118 PKLGSSLPFTPFRAMSTFP---------GVGAGDALPRLPRAGTEAPGKGAREGTRRAPV 168
PK +S P R +S P +L R G+ +P + RE P
Sbjct: 621 PKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGS-SPSRSTREARSPQPN 679
Query: 169 RKPGLSAGAGIWDPNA--VAAGPRPGRPGLRSHVTRYMGYSSLSEGFREL----EPHRMK 222
++ S P A ++ P P R G S R S + R + EP ++K
Sbjct: 680 KRHSPSP-----RPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIK 734
Query: 223 GFTAHSPQGRWKNRGRGTYRGAGPGAGSAPPGETPAPYTRRS 264
+ SPQ + + G+ A PP P+P +S
Sbjct: 735 KAASPSPQSVRRVSSSRSVSGSPEPAAKKPPA-PPSPVQSQS 775
Score = 37.0 bits (84), Expect = 0.033
Identities = 73/323 (22%), Positives = 108/323 (33%), Gaps = 52/323 (16%)
Query: 85 RERGRSSRKHQGPRELGRPPHPPRARSATLYPHPKLGSSLPFTPFRAMSTFPGVGAGDAL 144
RER RS R+ + R P P R S + S P ++ S P +
Sbjct: 166 RERSRSPRRRKS-----RSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKT 220
Query: 145 PRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIWDPNAVAAGPRPG------------ 192
P LP + +E T + + K + P + P
Sbjct: 221 PELPEPSVKVKEPSVQEATSTSDILK--------VPKPEPIPEPKEPSPEKNSKKEKEKE 272
Query: 193 --RPGLRSHV-TRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGRGTYRGAGPGAG 249
RP RS +R S R HR + ++SP+ R R R + R P
Sbjct: 273 KTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRS-RSYSPRRRPSPRRRPSPRRRTPPRR 331
Query: 250 SAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPADGFGAEEGPL 309
PP P RRS R RR+ ++ G+++ + S SP +
Sbjct: 332 MPPP-----PRHRRSRSPVRRRRRS-----SASLSGSSSSSSSSRSRSPPK----KPPKR 377
Query: 310 AHLEERSEGWASTFLSAPGPQHPPTPPACSGAATRREP----PGNARQSR-----GVGAG 360
R S S P +H P+PPA TR P R+SR G +G
Sbjct: 378 TSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSG 437
Query: 361 KPEPQRRPPRGSRAARRPRARRV 383
K + + + P+ R+V
Sbjct: 438 KVTKHKGTEKRESPSPAPKPRKV 460
Score = 31.6 bits (70), Expect = 1.4
Identities = 94/434 (21%), Positives = 139/434 (32%), Gaps = 68/434 (15%)
Query: 9 RRRAAQPAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAP-PSP-PRHPWTP 66
R ++ P+ P TP P P P+ A S + + P P P P+ P
Sbjct: 204 RTKSRSPSPAPEKKEK-TPELPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPE 262
Query: 67 EAMGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPHPKLG----- 121
+ + K + R + RS + + P RP R+RS + P +
Sbjct: 263 KNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHT-RPRRRHRSRSRSYSPRRRPSPRRRP 321
Query: 122 SSLPFTPFRAMSTFPGVGAGDALPRLPR---AGTEAPGKGAREGTRRAPVRKPGLSAGAG 178
S TP R M P + R R A + R+P +KP
Sbjct: 322 SPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKP------- 374
Query: 179 IWDPNAVAAGPRPGR-------PGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQG 231
P ++ PR R P R H R P T HSP
Sbjct: 375 ---PKRTSSPPRKTRRLSPSASPPRRRH--------------RPSPPATPPPKTRHSPTP 417
Query: 232 RWKNRGRGTYRGAGPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLA 291
+ NR R + PG S + R S + R+ + G A
Sbjct: 418 QQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAAAD 477
Query: 292 C-------------SARLSPADGFGAEEGPL-AHLEERSEG----WASTFLSAPGPQHPP 333
S+ S + +E P +H++ G + + ++P P+
Sbjct: 478 SVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQ 537
Query: 334 TPPACSGAATRREPPGNARQSRGVGAGKPEPQRR----PPRGSRAARRPRARRVFTDPRR 389
+ G R P R+ R P +RR PPR R P RR PRR
Sbjct: 538 KETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPR--RRTPSPPPRRRSPSPRR 595
Query: 390 HTRHRTRR-SVAPP 402
++ RR S +PP
Sbjct: 596 YSPPIQRRYSPSPP 609
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 44.7 bits (104), Expect = 2e-04
Identities = 92/367 (25%), Positives = 123/367 (33%), Gaps = 58/367 (15%)
Query: 15 PAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEAMGTGGC 74
PAV P +P + P P A+ PAA P P S A P P P TP A
Sbjct: 1012 PAVTPPSPKGSPAATPFPKGASTPPAATP---PSPKGSPAATPLPKGAPTTPAAT----- 1063
Query: 75 QGKVKFFLGIRERGRSSRKHQG-PRELGRPPHPPRARSATLYPH--PKLGSSLPFTPFRA 131
L + G ++ +G P P P+ AT P P ++ P +P
Sbjct: 1064 -------LPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGG 1116
Query: 132 MSTFPGVGAGD---ALPRLPRAGTEAPGKGAREGTRRA--PVRKPGLSAGAGIWDPNAVA 186
++T P GA A P P+ G P T A P K GL+ P A
Sbjct: 1117 LATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPA 1176
Query: 187 AGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGRGTYRGAGP 246
A P + GL + + + + T SP+G G +
Sbjct: 1177 ATPPSPKGGLATPSPKGAPTTPAA--------------TPPSPKG-------GLATPSPK 1215
Query: 247 GAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPADGFGAEE 306
GA + P P+P + P + T T S G A A PA + +
Sbjct: 1216 GAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLK 1275
Query: 307 GPLAHLEERSEGWASTFLSAPGPQ--HPPTP---PACSGAATRREPPGNARQSRGVGAGK 361
G LA + AP P PP+P PA S PP S G
Sbjct: 1276 GGLATPPHK---------GAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGT 1326
Query: 362 PEPQRRP 368
P P+ P
Sbjct: 1327 PPPKGAP 1333
Score = 43.5 bits (101), Expect = 3e-04
Identities = 94/370 (25%), Positives = 119/370 (32%), Gaps = 53/370 (14%)
Query: 18 GPHAPPSATPRHPTPPHATLRPAAA---PAHSPQSLQSLNAPPSPPRHPWTPEAMGTGGC 74
G PP+ATP P AT P A PA +P S + A PSP P P A
Sbjct: 938 GAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPK 997
Query: 75 QGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPHPKLGSSLPFTPFRAMST 134
G S K PP P + +AT P PK G+S P +T
Sbjct: 998 GGP----------ATPSPKGAPTPPAVTPPSPKGSPAAT--PFPK-GASTP-----PAAT 1039
Query: 135 FPGVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIWDPNAVAAGPRPGRP 194
P A LP+ P T +P P + G P A G P
Sbjct: 1040 PPSPKGSPAATPLPKGAPTTPA-----ATLPSPKGGPATPSLKGAPTPPAATPPSPKGGP 1094
Query: 195 GLRSHVTRYMGYSSL---SEGFRELEPHR----MKGFTAHSPQGRWKNRGRGTYRGAGPG 247
S M ++ +G PH+ T SP+G G G
Sbjct: 1095 ATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKG-------GLATPPPKG 1147
Query: 248 AGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPADGFGAEEG 307
A + P P+P + P + T T S G A A +PA + +G
Sbjct: 1148 APTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKG 1207
Query: 308 PLAHLEERSEGWASTF--------LSAPGPQHPPTPPACSGAATRREPPGNARQSRGVGA 359
LA + L+ P P+ PT P AAT P G GA
Sbjct: 1208 GLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTP----AATPPSPKGGPATPPPKGA 1263
Query: 360 GKPEPQRRPP 369
P P PP
Sbjct: 1264 PTP-PAATPP 1272
Score = 43.1 bits (100), Expect = 5e-04
Identities = 85/356 (23%), Positives = 126/356 (35%), Gaps = 44/356 (12%)
Query: 12 AAQPAVGPHAPPSATPRHPTPPHATLRPAAA---PAHSPQSLQSLNAPPSPPRHPWTPEA 68
A P G P+ATP P AT P A PA +P S + A PSP P TP A
Sbjct: 1164 ATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAA 1223
Query: 69 MGTGGCQGKVKFFLGIRERGRSSRKHQG-PRELGRPPHPPRARSATLYPH--PKLGSSLP 125
+ G ++ +G P P P+ AT P P ++ P
Sbjct: 1224 TPPS------------PKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATP 1271
Query: 126 FTPFRAMSTFPGVGAGD---ALPRLPRAG-TEAPGKGA---REGTRRAPVRKPGLSAGAG 178
+ ++T P GA + P P+ G +P KGA T +P PG G
Sbjct: 1272 PSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKG 1331
Query: 179 IWDPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGR 238
P AV G P L + G + P +G T P ++G
Sbjct: 1332 APTPPAVTPPSPKGTPTLPATTPSSKGGPT--------TPSSKEGPT--PPAATPSHKGG 1381
Query: 239 GTYRGAGPGAGSA---PPGETPAPYTRRSGPR---SRTWRRTWCWTGDSAAVGAAAVLAC 292
P G A P G+ +P P+ + R T + AV
Sbjct: 1382 PAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPV 1441
Query: 293 SARLSPADGFGAEEGPLAHLEERSEGWASTFLSAPGPQHPPTPPACSGAATRREPP 348
S + +PA A +G A + + ++ P P+ PP P + +++ ++ P
Sbjct: 1442 SLKKAPAT--SAPKGGPATPSSKGDPTLPA-VTPPSPKEPPAPKQVATSSSPKKAP 1494
Score = 40.8 bits (94), Expect = 0.002
Identities = 97/382 (25%), Positives = 127/382 (33%), Gaps = 62/382 (16%)
Query: 15 PAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEAMGTGGC 74
PA P +P P P+P A PAA +P S + A PSP P TP A+
Sbjct: 966 PAATPPSPKGG-PATPSPKGAPTPPAA----TPPSPKGGPATPSPKGAP-TPPAVTPPSP 1019
Query: 75 QGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPHPKLGSSLPFTPFRAMST 134
+G K PP P + +AT P PK P TP +T
Sbjct: 1020 KGS--------PAATPFPKGASTPPAATPPSPKGSPAAT--PLPK---GAPTTP---AAT 1063
Query: 135 FPGVGAGDALPRL-------------PRAGTEAPG-KGA-REGTRRAPVRKPGLSAGAGI 179
P G A P L P+ G P KGA P K GL+
Sbjct: 1064 LPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHK 1123
Query: 180 WDPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGRG 239
P AA P + GL + + + + P KG A P +G
Sbjct: 1124 GAPTTPAATPPSPKGGLATPPPKGAPTTPAA------TPPSPKGGLATPPP-----KGAP 1172
Query: 240 TYRGA---GPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARL 296
T A P G A P AP T + P S + AA + L
Sbjct: 1173 TTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGL 1232
Query: 297 SPADGFGAEEGPLAHLEERSEGWASTFLSAPGPQHPPTPPACSGAATR---REPPGNARQ 353
+ GA P A G A+ P P+ PTPPA + + + PP
Sbjct: 1233 ATPSPKGAPTTPAATPPSPKGGPAT-----PPPKGAPTPPAATPPSLKGGLATPPHKGAP 1287
Query: 354 SRGV---GAGKPEPQRRPPRGS 372
+ V + K P PP+G+
Sbjct: 1288 NPAVVTPPSPKGGPATSPPKGA 1309
Score = 40.8 bits (94), Expect = 0.002
Identities = 86/343 (25%), Positives = 107/343 (31%), Gaps = 51/343 (14%)
Query: 12 AAQPAVGPHAPPSATPRHPTPPHATLRPAAA---PAHSPQSLQSLNAPPSPPRHPWTPEA 68
A P G P+ATP P AT P A PA +P S + A P P P TP A
Sbjct: 1118 ATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAA 1177
Query: 69 MGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPHPKLGSSLPFTP 128
G P G P P A P PK G + P +P
Sbjct: 1178 TPPSPKGGLAT-----------------PSPKGAPTTP-----AATPPSPKGGLATP-SP 1214
Query: 129 FRAMSTFPGVGAGDALPRLPRAGTEAPG-KGAREGTRRAPVRKPGLSAGAGIWDPNAVAA 187
A +T A P P+ G P KGA P P G P
Sbjct: 1215 KGAPTT------PAATPPSPKGGLATPSPKGAPTTPAATP---PSPKGGPATPPPKGAPT 1265
Query: 188 GPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGRGTYRGAGPG 247
P P L+ + + + + P KG A SP +G T A P
Sbjct: 1266 PPAATPPSLKGGLATPPHKGAPNPAV--VTPPSPKGGPATSPP-----KGAPTPPAATPP 1318
Query: 248 AGSAPPGETP---APYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPADGFGA 304
+ PG P AP P S T T S+ G + PA
Sbjct: 1319 SPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSH 1378
Query: 305 EEGPLAHLEERSEGWASTFLSAPGPQHPPTPPACSGAATRREP 347
+ GP G A P P+ PT PA + ++ P
Sbjct: 1379 KGGPAMTPPSPKRGPA-----IPSPKGDPTSPAVIPLSPKKAP 1416
Score = 32.3 bits (72), Expect = 0.80
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 9 RRRAAQPAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAP---PSPPRHPWT 65
R AA P+ G PP+ TP AT P PA +P S P P P+ P
Sbjct: 1422 REGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPA-TPSSKGDPTLPAVTPPSPKEPPA 1480
Query: 66 PEAMGTGGCQGK 77
P+ + T K
Sbjct: 1481 PKQVATSSSPKK 1492
Score = 31.2 bits (69), Expect = 1.8
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 21 APPSATP---RHPTPPHATLRPAAAPAHSPQSLQSLNA--PPSPPRHPWTPEAMGT 71
+PP+ TP + P L P A + SP+ + A PPSP + P TP GT
Sbjct: 1581 SPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGT 1636
Score = 28.9 bits (63), Expect = 8.9
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 22 PPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPP 60
PP+ TP P AT P P P + SL P+ P
Sbjct: 1616 PPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDSPTSP 1654
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 44.3 bits (103), Expect = 2e-04
Identities = 57/204 (27%), Positives = 71/204 (34%), Gaps = 47/204 (23%)
Query: 15 PAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSL-NAPPSPPRHPWTPEAMGTGG 73
P VG P S++ TPP + P + P +P ++ +APP P P TP + G
Sbjct: 119 PGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAP--PPTPPSSGV-- 174
Query: 74 CQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPHPKLGSSLPFTPFRAMS 133
P + G PP PP A P PK G
Sbjct: 175 --------------------PTTPPQAGGPPPPPAAVPGP-GPGPKQGPG---------- 203
Query: 134 TFPGVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIWDP---NAVAAGPR 190
PG G +P P+ G PG G + P R G G P GP
Sbjct: 204 --PGGPKGGKMPGGPKPG-GGPGLSTPGGHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPP 260
Query: 191 PGRPGLRSHVTRYMGYSSLSEGFR 214
PG PG RS S SEGF+
Sbjct: 261 PGGPGGRSEEK-----ISDSEGFK 279
Score = 42.4 bits (98), Expect = 8e-04
Identities = 49/177 (27%), Positives = 58/177 (32%), Gaps = 32/177 (18%)
Query: 22 PPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEAMGTGGCQGKVKFF 81
PP P H PPH PQ Q PP P A G G G
Sbjct: 78 PPQQPPPHQPPPH------------PQPHQQQQPPPPPQDSSKPVVAQGPGPAPG----- 120
Query: 82 LGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPHPKLGSSLPFTPFRAMSTFPGVGAG 141
+G SS P G PP + T P P + S+ P P P
Sbjct: 121 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPT--PPPAVTSAPPGAP-------PPTPPS 171
Query: 142 DALPRL-PRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIWDPNAVAAGPRP-GRPGL 196
+P P+AG P A G P + PG G + GP+P G PGL
Sbjct: 172 SGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKG----GKMPGGPKPGGGPGL 224
Score = 32.0 bits (71), Expect = 1.0
Identities = 61/266 (22%), Positives = 80/266 (30%), Gaps = 42/266 (15%)
Query: 156 GKGAREGTR--RAPVRKPGLSAGAGIWDPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGF 213
G G R G R+P GL+ G P +GP+P P H +
Sbjct: 21 GGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQ 80
Query: 214 R----ELEPHRMKGFTAHSPQGRWKNRGRGTYRGAGP--GAGSAPPGETPAPYTRRSGPR 267
+ + PH P + +G GP G GSAPP + AP + P
Sbjct: 81 QPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPA--TPPT 138
Query: 268 SRTWRRTWCWTGDSAAVGAAAVLACSARLSPADGFGAEEGPLAHLEERSEGWASTFLSAP 327
S G G ++ A P S G +T A
Sbjct: 139 S----------GAPPGSGPGPTPTPPPAVTSAPPGAPPPTP------PSSGVPTTPPQAG 182
Query: 328 GPQHPPTPPACSGAATRREP----------PGNARQSRGVGAGKPEPQRRPPRGSRAARR 377
GP PP G ++ P PG + G G P +PP R
Sbjct: 183 GPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPH--RGGGE 240
Query: 378 PRARRVFTDPRRHTRHRTRRSVAPPG 403
PR R P H+ PPG
Sbjct: 241 PRGGRQHHPPYHQQHHQG----PPPG 262
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 44.3 bits (103), Expect = 2e-04
Identities = 85/384 (22%), Positives = 115/384 (29%), Gaps = 123/384 (32%)
Query: 15 PAVGPHAPPSATPRHPTPPHATLRPAAAP-AHSPQSLQSLNAPPSPPRHPWTPEAMGTGG 73
P+V P P+ P T P P PQ PP P P P G
Sbjct: 29 PSVISGKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQ 88
Query: 74 CQGKVKFFLGIRERGRSSRKHQGPRELGRPP-HPPRARSATLYPHPKLGSSLPFTPFRAM 132
QG P G+P PP+ + + P P+
Sbjct: 89 SQGP-------------------PPRPGKPEGQPPQGGNQSQGPPPR------------- 116
Query: 133 STFPGVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIWDPNAVAAGPRPG 192
PG G P+ G ++ G R G P + G + PRPG
Sbjct: 117 ---PGKPEGPP----PQGGNQSQGPPPRPGKPEGPPPQGG---------NQSQGPPPRPG 160
Query: 193 RPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGR----GTYRGAGPGA 248
+P EG PQG +++G G G P
Sbjct: 161 KP----------------EG--------------PPPQGGNQSQGPPPHPGKPEGPPPQG 190
Query: 249 GSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPADGFGAEEGP 308
G+ G P P + GP + G + + G P G EGP
Sbjct: 191 GNQSQGPPPRP-GKPEGPPPQ---------GGNQSQG------------PPPRPGKPEGP 228
Query: 309 LAHLEERSEGWASTFLSAPGPQHPPTPPACSGAATRREPP-----------GNARQSRGV 357
+ + +G P P P PP G +R PP GN +Q
Sbjct: 229 PSQGGNKPQG------PPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPP 282
Query: 358 GAGKPEPQRRPPRGSRAARRPRAR 381
AGKP+ PP+G R R P+ +
Sbjct: 283 PAGKPQGPPPPPQGGRPHRPPQGQ 306
Score = 31.6 bits (70), Expect = 1.4
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 286 AAAVLACSARLSPADGFGAEEGPLAHLEERSEGWASTFLSAPGPQHPPTPPACSGAATRR 345
+ A+LA S+ S + EE P + + EG PQ P PP
Sbjct: 7 SVALLALSSAQSLNEDVSQEESPSV-ISGKPEGRRPQ--GGNQPQRTPPPPG----KPEG 59
Query: 346 EPPGNARQSRGVGAGKPEPQRRPPRGSRAARRPRAR 381
PP QS+G +P+ PP+G ++ P R
Sbjct: 60 RPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPR 95
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 43.9 bits (102), Expect = 3e-04
Identities = 86/345 (24%), Positives = 108/345 (31%), Gaps = 43/345 (12%)
Query: 47 PQSLQSLNAPPSPPRHPWTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHP 106
P + P PP P P G GG + G+ GP L P P
Sbjct: 49 PPGRDGEDGPTGPPGPPGPPGPPGLGG-------NFAAQYDGKGVGLGPGPMGLMGPRGP 101
Query: 107 PRARSATLYPHPKLGSSLPFTPFRAMSTFPGVGAGDALPRLPRAGTEAPGKGAREGTR-- 164
P A A P P+ P T P G A P PGK R G R
Sbjct: 102 PGAAGA---PGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGV 158
Query: 165 ------RAPVRKPGLSAGAGIWDPNAV-AAGPRPGRPGLRSHVTRYMGYSSLSE-GFREL 216
R PGL GI N + +PG PG++ + + G R L
Sbjct: 159 VGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGL 218
Query: 217 EPHRMKGFTAHSPQGRWKNRGRGTYRGAGPGAGSAPPGETPAPYTR-------RSGPRSR 269
R + R + G AGP + PPG AP + +GP
Sbjct: 219 PGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGP--- 275
Query: 270 TWRRTWCWTGDSAAVGAAAVLACSARLSPADGFGAEEGPLAHLEERSEGWASTFLSAPGP 329
G + G + S + P GA A G A PGP
Sbjct: 276 --------AGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGA-PGLPGP 326
Query: 330 QHPPTPPACSGAATRR---EPPGNARQSRGVGAGKPEPQRRPPRG 371
+ P P +GA R PG A S+G K EP P+G
Sbjct: 327 RGIPGPVGAAGATGARGLVGEPGPA-GSKGESGNKGEPGSAGPQG 370
Score = 40.4 bits (93), Expect = 0.003
Identities = 93/361 (25%), Positives = 107/361 (29%), Gaps = 48/361 (13%)
Query: 12 AAQPAVGPHAPPSATPRHPT--PPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEAM 69
AA PA GP+ PP PP T P AA P ++ PP PP
Sbjct: 761 AAGPA-GPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLR 819
Query: 70 GTGGCQGKVKFFLGIRERGRSS-RKHQGPRELGRPPHPPRARSATLYPHPKLGSS--LPF 126
G G QG V + G +GP PP T P LG+ L
Sbjct: 820 GPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPP----GTPGPQGLLGAPGILGL 875
Query: 127 TPFRAMSTFPGVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGI--WDPNA 184
R PGV P P PG G V PG++ G D N
Sbjct: 876 PGSRGERGLPGVAGAVGEPG-PLGIAGPPGARGPPGA----VGSPGVNGAPGEAGRDGNP 930
Query: 185 VAAGPRPGRPGLRSHVTR--YMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGR-GTY 241
GP PGR G H Y G PH G P G+ NRG G
Sbjct: 931 GNDGP-PGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVG-----PAGKHGNRGETGPS 984
Query: 242 RGAGPGAGSAPPGETPAPYTR-------RSGPRSRTWRRTWCWT----------GDSAAV 284
GP P G + R GPR + GD A
Sbjct: 985 GPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAP 1044
Query: 285 GAAAVLACSARLSPA-----DGFGAEEGPLAHLEERSEGWASTFLSAPGPQHPPTPPACS 339
G+ P+ DG G + R PGP PP PP S
Sbjct: 1045 GSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGPPGPPGVS 1104
Query: 340 G 340
G
Sbjct: 1105 G 1105
Score = 36.6 bits (83), Expect = 0.043
Identities = 91/362 (25%), Positives = 107/362 (29%), Gaps = 72/362 (19%)
Query: 18 GPHAPPSATPRHPTPPHATL---RPAAAP-----AHSPQSLQSLNA------PPSPPRHP 63
GP P ++ HA L R A P A P Q + PP PP
Sbjct: 496 GPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQ 555
Query: 64 WTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRP-PHPPRARSATLYPHPKLGS 122
P G G GK ERG E G P P PR P + G+
Sbjct: 556 GLPGPSGPAGEVGKPG------ERGLHG-------EFGLPGPAGPRGERG---PPGESGA 599
Query: 123 SLPFTPF--RAMSTFPGVGAGDALPRLPRA-GTEAPGKGAREGTRRAPVRKPGLSAGAGI 179
+ P P R S PG P + A GT P P PG AGI
Sbjct: 600 AGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPS---------GPSGLPGERGAAGI 650
Query: 180 WDPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGRG 239
G PGLR + R+ A P G +RG
Sbjct: 651 -----PGGKGEKGEPGLRGEI---------GNPGRDGARGAPGAVGAPGPAGATGDRGEA 696
Query: 240 TYRG-AGPGAGSAPPGET----PAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSA 294
G AGP PGE PA +GP + G GA +
Sbjct: 697 GAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQ-----PGAKGERGAKGPKGENG 751
Query: 295 RLSPADGFGAE-----EGPLAHLEERSEGWASTFLSAPGPQHPPTPPACSGAATRREPPG 349
+ P GA GP R +G PG PP SG + PPG
Sbjct: 752 VVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPG 811
Query: 350 NA 351
A
Sbjct: 812 PA 813
Score = 36.2 bits (82), Expect = 0.056
Identities = 99/384 (25%), Positives = 113/384 (29%), Gaps = 93/384 (24%)
Query: 39 PAAAPAHSPQSLQSLNAPPSPPRHPWTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPR 98
P AA A PQ Q P P A G G GK
Sbjct: 102 PGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKA-------------------G 142
Query: 99 ELGRPPHPPRARSATLYPHPKLGSSLPFTP----FRAMSTFPGVGAGDALPRLPRAGTE- 153
E G P P R + P+ P TP F+ + G+ P P E
Sbjct: 143 EDGHPGKPGRPGERGVV-GPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEP 201
Query: 154 -APGKGAREGT--------RRAPVRKPGLSAGAGIWDPNAVAAGPR-----------PGR 193
APG+ G R V PG AGA D + GP PG
Sbjct: 202 GAPGENGTPGQTGARGLPGERGRVGAPG-PAGARGSDGSVGPVGPAGPIGSAGPPGFPGA 260
Query: 194 PGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHS-PQGRWKNRGRGTYRGAGPGAGSAP 252
PG + + G + P G S P G N G GA AG
Sbjct: 261 PGPKGEI----GAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGL-- 314
Query: 253 PGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPADGFGAEEGPLAHL 312
PG AP GPR G VGAA + A G E GP
Sbjct: 315 PGVAGAP--GLPGPR-----------GIPGPVGAAGA-------TGARGLVGEPGPAGSK 354
Query: 313 EERSEGWASTFLSAPGPQHPPTPPACSGAATRREPPGNARQSRGVG----AGKPEPQRRP 368
E S PG P PP SG +R P G A + G G P + P
Sbjct: 355 GE------SGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLP 408
Query: 369 ----------PRGSRAARRPRARR 382
P GSR A P R
Sbjct: 409 GADGRAGVMGPPGSRGASGPAGVR 432
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 43.9 bits (102), Expect = 3e-04
Identities = 66/242 (27%), Positives = 92/242 (38%), Gaps = 25/242 (10%)
Query: 35 ATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEAMGTGGCQGKVKFFLGIRERGRSSRKH 94
+TL P+S + N+ PP+ + +GG + L IR G+ S +
Sbjct: 430 STLSSKGGSEGQPESSTASNSVVPPPQGG-SGRGSPSGGSTAEASDTLSIRSSGQLSGRS 488
Query: 95 QGPRELGRPPHPPRARSATLYPHPKLGSSLPFTPFRAMSTFPGVGAGDALPRLPRAGTEA 154
R+L RPP PPR R+ +L+ + G ++P P P P+LPR
Sbjct: 489 VSLRKLKRPPPPPR-RTHSLH---QRGLAVPDGPL----GLPPKPERKQQPQLPR----P 536
Query: 155 PGKGAREGTRRAPVRKPGLSAGAGIWDPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFR 214
P G EG AP A W P G R ++ GYSS S G
Sbjct: 537 PTTGGSEGAGAAPCP----PNPANSWVPGLSPGGSRRPPRSPERTLSPSSGYSSQS-GTP 591
Query: 215 ELEPHRMKGFTAHSPQGRWKNRGRGT-YRGAGPGAGSA-----PPGETPAPYTRRSGPRS 268
L P + G A + + R T R G S+ PAP + RSGP+
Sbjct: 592 TLPPKGLAGPPASPGKAQPPKPERVTSLRSPGASVSSSLTSLCSSSSDPAP-SDRSGPQI 650
Query: 269 RT 270
T
Sbjct: 651 LT 652
Score = 37.4 bits (85), Expect = 0.025
Identities = 94/394 (23%), Positives = 125/394 (31%), Gaps = 65/394 (16%)
Query: 22 PPSATPRHPTPPHATLRPAA---APAHSP---QSLQSLNAPPSPPRHPWTPEAMGTGGCQ 75
PPS P + PP T +P AP+ S + LQ N PP PP P +
Sbjct: 730 PPSPPPSYHPPPPPTKKPEVVVEAPSASETAEEPLQDPNWPPPPPPAPEEQDLSMADFPP 789
Query: 76 GKVKFFLGIRERGRSSRKHQGPR---ELGRPPHPPRARSATLYPHPKLGSSLPFTPFRAM 132
+ FF +S + GP EL P + + L P P P
Sbjct: 790 PEEAFF------SVASPEPAGPSGSPELVSSPAASSSSATALQIQPPGSPDPPPAPPAPA 843
Query: 133 STFPGVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIWDPNAVAAGPRPG 192
G LP+ G G RE AP+ P L + A P P
Sbjct: 844 PASSAPGHVAKLPQKEPVGCSKGGGPPREDV-GAPLVTPSLLQMVRLRSVGAPGGAPTPA 902
Query: 193 RPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFTAHSPQGRWKNRGRGTYRGAGPGAGSAP 252
+G S+ + R R A S R + A G SA
Sbjct: 903 -----------LGPSAPQKPLRRALSGRASPVPAPSSGLHAAVRLKACSLAASEGLSSAQ 951
Query: 253 PGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPADGFGAEEGPLAHL 312
P P R P+S ++ ++ S L +SP + +A L
Sbjct: 952 PNGPPEAEPR--PPQSPASTASFIFSKGSRK------LQLERPVSPETQADLQRNLVAEL 1003
Query: 313 EERSEGWASTFLSAPGPQHPPTPPACSGAATRREPPGNARQSRGVGAGKPEPQRRPPRGS 372
SE Q PP P S A PP + S GV PP S
Sbjct: 1004 RSISE------------QRPPQAPKKSPKA---PPPVARKPSVGV----------PPPAS 1038
Query: 373 RAARRPRARRVFTDPRR---HTRHRTRRSVAPPG 403
+ PRA + P HT+ RT+R +A G
Sbjct: 1039 PS--YPRAEPLTAPPTNGLPHTQDRTKRELAENG 1070
Score = 32.7 bits (73), Expect = 0.61
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 19 PHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWT 65
P +PP + PR P P L AAPA P + + +A P P P T
Sbjct: 669 PFSPPPSKPRSPNPAAPAL---AAPAVVPGPVSTTDASPQSPPTPQT 712
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 43.5 bits (101), Expect = 3e-04
Identities = 88/371 (23%), Positives = 107/371 (28%), Gaps = 76/371 (20%)
Query: 24 SATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEAMGTGGCQGKVKFFLG 83
+A P P P AP P Q L PP PP P G G G
Sbjct: 640 AAGPPGPAGPAGERGEQGAPG--PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGP 697
Query: 84 IRERGRSSRKH-------QGPRELGRPPHPPRARSATLYPHPKLGSSLPFTPFRAMSTFP 136
ERG + QGPR L P + A+ P P + P
Sbjct: 698 RGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPP-----GLQGMP 752
Query: 137 GV--GAGDALPRLPRA-----GTE-APGKGAREGTRRAPVRKPGLSAGAG----IWDPNA 184
G AG A P+ R G E APGK G P+ PG + G + P
Sbjct: 753 GERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGL-TGPIGPPGPAGANGEKGEVGPPGP 811
Query: 185 VAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHRMKGFT----AHSPQGRWKNRGRGT 240
+ G PG R E P GF A G +G
Sbjct: 812 AGSAGARGAPGERG----------------ETGPPGPAGFAGPPGADGQPGAKGEQGEAG 855
Query: 241 YRGAGPGAGSAPPGETPAPY--TRRSGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSP 298
+G G P P P T +GP+ G GA + R+ P
Sbjct: 856 QKGDAGAPGPQGPSGAPGPQGPTGVTGPKGA--------RGAQGPPGATGFPGAAGRVGP 907
Query: 299 ADGFGAEEGPLAHLEERSEGWASTFLSAPGPQHPPTPPACSGAATRREPPGNARQSRGVG 358
G GP PGP P GA PPG A + G
Sbjct: 908 -PGSNGNPGP------------------PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG 948
Query: 359 AGKPEPQRRPP 369
P ++ P
Sbjct: 949 PAGPPGEKGEP 959
Score = 38.9 bits (89), Expect = 0.009
Identities = 100/399 (25%), Positives = 124/399 (31%), Gaps = 51/399 (12%)
Query: 9 RRRAAQPA-VGPHAP--PSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWT 65
R QP GP P P+ P P P A A P+ Q P P P
Sbjct: 344 RGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGP 403
Query: 66 PEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPRELGRPPHPPRARSATLYPHPKLGSSLP 125
A G G G G + + P G P PP + AT PK + P
Sbjct: 404 AGASGNPGTDG----IPGAKGSAGAPGIAGAPGFPG-PRGPPGPQGATGPLGPKGQTGEP 458
Query: 126 FTPFRAMSTFPGVGAGDALPRLPRAGTEAPGKGAREGTRRA--------PVRKPGLSAGA 177
++ F G P P APG EG R A P+ PG
Sbjct: 459 -----GIAGFKGEQGPKGEPG-PAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAP 512
Query: 178 GI--WDPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRELEPHR--MKGFTAH----SP 229
G + AGP+ G PG R + + R EP +G T P
Sbjct: 513 GNRGFPGQDGLAGPK-GAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGP 571
Query: 230 QGRWKNRGRGTYRGA----GPGAGSAPPGETPAPYTRRSGPRSRTWRRTWCWTGDSAAVG 285
QG+ G G GP PG P GP+ G+ G
Sbjct: 572 QGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFP-----GPKGANGEPGKA--GEKGLPG 624
Query: 286 AAAVLACSARLSPADGFGAEEGPLAHLEERSEGWA---STFLSAPGPQHPPTPPACSGAA 342
A + + G GP ER E A S F PGP P PP G
Sbjct: 625 APGLRGLPGK-DGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGP---PGPPGEGGKP 680
Query: 343 TRREPPGNARQSRGVG--AGKPEPQRRPPRGSRAARRPR 379
+ PG A VG + P R G++ + PR
Sbjct: 681 GDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPR 719
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,406,503
Number of Sequences: 37866
Number of extensions: 1671157
Number of successful extensions: 19929
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 1186
Number of HSP's that attempted gapping in prelim test: 12964
Number of HSP's gapped (non-prelim): 7018
length of query: 411
length of database: 18,247,518
effective HSP length: 105
effective length of query: 306
effective length of database: 14,271,588
effective search space: 4367105928
effective search space used: 4367105928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.