Guide to the Human Genome
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Name: LOC728351 Sequence: fasta or formatted (224aa) NCBI GI: 239752133
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {411aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.9         29           3
 C cysteine            2.7          6           1
 D aspartate           2.2          5           1
 E glutamate           4.5         10           2
 F phenylalanine       2.2          5           1
 G glycine            13.8         31           3
 H histidine           2.2          5           1
 I isoleucine          0.4          1           1
 K lysine              0.9          2           1
 L leucine             3.1          7           1
 M methionine          0.4          1           1
 N asparagine          0.9          2           1
 P proline            13.8         31           2
 Q glutamine           2.7          6           1
 R arginine           16.1         36           2
 S serine              8.9         20           2
 T threonine           5.4         12           1
 V valine              3.6          8           1
 W tryptophan          2.2          5           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728351             0.813   PREDICTED: hypothetical protein 
APC2                  0.051   adenomatosis polyposis coli 2 
LOC100293176          0.046   PREDICTED: hypothetical protein 
LOC100289054          0.046   PREDICTED: hypothetical protein 
LOC100289054          0.046   PREDICTED: hypothetical protein XP_002343716 
COL5A2                0.042   alpha 2 type V collagen preproprotein 
LOC100290812          0.042   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.042   PREDICTED: hypothetical protein XP_002343496 
BAT2                  0.042   HLA-B associated transcript-2 
LOC100128074          0.040   PREDICTED: hypothetical protein 
C10orf95              0.037   hypothetical protein LOC79946 
GRIN2D                0.037   N-methyl-D-aspartate receptor subunit 2D precursor ...
LOC100130360          0.035   PREDICTED: hypothetical protein 
LOC100127930          0.035   PREDICTED: hypothetical protein 
LOC100293975          0.035   PREDICTED: hypothetical protein 
LOC100129571          0.035   PREDICTED: similar to hCG1646049 
LOC100129571          0.035   PREDICTED: similar to hCG1646049 
LOC100129571          0.035   PREDICTED: similar to hCG1646049 
SYN1                  0.035   synapsin I isoform Ia 
SYN1                  0.035   synapsin I isoform Ib 
FAM110C               0.035   hypothetical protein LOC642273 
PRB1                  0.035   proline-rich protein BstNI subfamily 1 isoform 3 pre...
LOC100289721          0.033   PREDICTED: hypothetical protein XP_002347280 
FLJ22184              0.033   PREDICTED: hypothetical protein LOC80164 
LOC100288426          0.033   PREDICTED: hypothetical protein XP_002343430 
FZD8                  0.033   frizzled 8 
PRB2                  0.033   proline-rich protein BstNI subfamily 2 
PRB1                  0.033   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB1                  0.033   proline-rich protein BstNI subfamily 1 isoform 2 pre...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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