Guide to the Human Genome
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Name: LOC100288372 Sequence: fasta or formatted (413aa) NCBI GI: 239746602
Description:

PREDICTED: hypothetical protein XP_002343796

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         42           2
 C cysteine            6.1         25           2
 D aspartate           1.5          6           1
 E glutamate           3.9         16           2
 F phenylalanine       4.1         17           3
 G glycine             9.2         38           2
 H histidine           1.7          7           1
 I isoleucine          1.0          4           1
 K lysine              3.4         14           1
 L leucine            10.2         42           2
 M methionine          0.5          2           1
 N asparagine          1.5          6           1
 P proline            10.4         43           2
 Q glutamine           5.6         23           1
 R arginine            6.3         26           1
 S serine              8.2         34           2
 T threonine           4.8         20           2
 V valine              7.5         31           3
 W tryptophan          3.4         14           1
 Y tyrosine            0.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343796 
LOC100289735          1.000   PREDICTED: hypothetical protein XP_002348110 
LOC100293087          0.549   PREDICTED: hypothetical protein 
CASKIN2               0.015   cask-interacting protein 2 isoform b 
CASKIN2               0.015   cask-interacting protein 2 isoform a 
CDKN1C                0.009   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.009   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.009   cyclin-dependent kinase inhibitor 1C isoform a 
PEAR1                 0.009   platelet endothelial aggregation receptor 1 
SRCAP                 0.009   Snf2-related CBP activator protein 
KRTAP5-11             0.009   keratin associated protein 5-11 
HIC2                  0.009   hypermethylated in cancer 2 
NPNT                  0.009   nephronectin 
FRAT2                 0.008   GSK-3 binding protein FRAT2 
LOC100294368          0.008   PREDICTED: hypothetical protein 
TPI1                  0.007   triosephosphate isomerase 1 isoform 2 
TPI1                  0.007   triosephosphate isomerase 1 isoform 1 
LOC440829             0.007   PREDICTED: transmembrane protein 46-like 
KRTAP5-2              0.007   keratin associated protein 5-2 
BAT2                  0.006   HLA-B associated transcript-2 
SIX5                  0.006   sine oculis homeobox homolog 5 
SPATA21               0.006   spermatogenesis associated 21 
NOTCH1                0.006   notch1 preproprotein 
CABIN1                0.006   calcineurin binding protein 1 
SGEF                  0.006   Src homology 3 domain-containing guanine nucleotide...
KRTAP5-4              0.006   keratin associated protein 5-4 
WNK2                  0.006   WNK lysine deficient protein kinase 2 
RP1L1                 0.006   retinitis pigmentosa 1-like 1 
C2orf69               0.006   hypothetical protein LOC205327 
KRTAP5-7              0.006   keratin associated protein 5-7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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