Guide to the Human Genome
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Name: LOC100294368 Sequence: fasta or formatted (182aa) NCBI GI: 239749949
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         20           1
 C cysteine            1.6          3           1
 D aspartate           2.2          4           1
 E glutamate           4.4          8           2
 F phenylalanine       2.2          4           2
 G glycine            11.0         20           3
 H histidine           2.7          5           1
 I isoleucine          2.2          4           1
 K lysine              0.5          1           1
 L leucine             7.1         13           2
 M methionine          1.6          3           1
 N asparagine          1.1          2           1
 P proline            12.6         23           1
 Q glutamine           8.8         16           2
 R arginine            9.9         18           2
 S serine              9.3         17           2
 T threonine           2.7          5           1
 V valine              6.6         12           2
 W tryptophan          2.2          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
BBC3                  0.048   BCL2 binding component 3 isoform 1 
LOC728650             0.031   PREDICTED: hypothetical protein 
KNDC1                 0.028   kinase non-catalytic C-lobe domain (KIND) containin...
LOC728650             0.025   PREDICTED: hypothetical protein 
MDC1                  0.023   mediator of DNA-damage checkpoint 1 
LOC100292143          0.023   PREDICTED: hypothetical protein 
LOC100132261          0.023   PREDICTED: similar to hCG2023245 
REPIN1                0.020   replication initiator 1 isoform 1 
REPIN1                0.020   replication initiator 1 isoform 1 
REPIN1                0.020   replication initiator 1 isoform 3 
REPIN1                0.020   replication initiator 1 isoform 1 
NKX1-2                0.020   NK1 homeobox 2 
LOC100293087          0.020   PREDICTED: hypothetical protein 
NKX1-2                0.020   PREDICTED: NK1 homeobox 2 
LOC100289735          0.020   PREDICTED: hypothetical protein XP_002348110 
NKX1-2                0.020   PREDICTED: NK1 homeobox 2 
LOC100288372          0.020   PREDICTED: hypothetical protein XP_002343796 
NKX1-2                0.020   PREDICTED: NK1 homeobox 2 
CRTC2                 0.020   CREB regulated transcription coactivator 2 
BTBD2                 0.020   BTB (POZ) domain containing 2 
PSD4                  0.020   pleckstrin and Sec7 domain containing 4 
LOC390595             0.017   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.017   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.017   PREDICTED: hypothetical protein 
GPRIN1                0.017   G protein-regulated inducer of neurite outgrowth 1 ...
RFX1                  0.017   regulatory factor X1 
PHC1                  0.017   polyhomeotic 1-like 
BAI2                  0.017   brain-specific angiogenesis inhibitor 2 
FAM123A               0.017   hypothetical protein LOC219287 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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