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Search of human proteins with 239746552
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746552 PREDICTED: hypothetical protein XP_002343776 [Homo
sapiens]
(106 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746552 PREDICTED: hypothetical protein XP_002343776 [Homo ... 233 3e-62
gi|239755061 PREDICTED: hypothetical protein XP_002346204 [Homo ... 211 8e-56
gi|239748504 PREDICTED: hypothetical protein XP_002346687 [Homo ... 211 8e-56
gi|239743823 PREDICTED: hypothetical protein XP_002344302 [Homo ... 211 8e-56
gi|239743739 PREDICTED: hypothetical protein XP_002342949 [Homo ... 44 4e-05
gi|169208912 PREDICTED: hypothetical protein [Homo sapiens] 39 0.001
gi|169208667 PREDICTED: hypothetical protein [Homo sapiens] 39 0.001
gi|169208084 PREDICTED: hypothetical protein [Homo sapiens] 39 0.001
gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ... 37 0.003
gi|122891874 keratin associated protein 5-5 [Homo sapiens] 37 0.003
gi|32171221 GRP1 (general receptor for phosphoinositides 1)-asso... 35 0.010
gi|109452587 family with sequence similarity 98, member B isofor... 35 0.010
gi|31542255 hypothetical protein LOC140706 [Homo sapiens] 35 0.010
gi|60593038 keratin associated protein 5-4 [Homo sapiens] 35 0.013
gi|100913206 DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapi... 35 0.017
gi|89038927 PREDICTED: similar to U2 small nuclear RNA auxillary... 34 0.029
gi|89038281 PREDICTED: similar to U2 small nuclear RNA auxillary... 34 0.029
gi|109255251 loricrin [Homo sapiens] 34 0.029
gi|124430557 a disintegrin-like and metalloprotease with thrombo... 34 0.029
gi|54400749 keratin associated protein 5-1 [Homo sapiens] 34 0.029
gi|60593040 keratin associated protein 5-10 [Homo sapiens] 33 0.038
gi|53292629 keratin associated protein 5-11 [Homo sapiens] 33 0.050
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 33 0.050
gi|5032007 purine-rich element binding protein A [Homo sapiens] 33 0.065
gi|239749372 PREDICTED: hypothetical protein XP_002347017 [Homo ... 33 0.065
gi|239743509 PREDICTED: hypothetical protein XP_002342878 [Homo ... 33 0.065
gi|187761373 ariadne ubiquitin-conjugating enzyme E2 binding pro... 33 0.065
gi|60279697 keratin associated protein 5-7 [Homo sapiens] 33 0.065
gi|51972220 keratin associated protein 5-2 [Homo sapiens] 33 0.065
gi|4507741 twist [Homo sapiens] 32 0.085
>gi|239746552 PREDICTED: hypothetical protein XP_002343776 [Homo
sapiens]
Length = 106
Score = 233 bits (594), Expect = 3e-62
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MRAGEADSPAPPPLTRQSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGGGWEEDYQR 60
MRAGEADSPAPPPLTRQSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGGGWEEDYQR
Sbjct: 1 MRAGEADSPAPPPLTRQSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGGGWEEDYQR 60
Query: 61 GLRETQGRTHRSPVVRTSLIGLLLGFPVKEELRGAGWAARTPLGIR 106
GLRETQGRTHRSPVVRTSLIGLLLGFPVKEELRGAGWAARTPLGIR
Sbjct: 61 GLRETQGRTHRSPVVRTSLIGLLLGFPVKEELRGAGWAARTPLGIR 106
>gi|239755061 PREDICTED: hypothetical protein XP_002346204 [Homo
sapiens]
Length = 122
Score = 211 bits (538), Expect = 8e-56
Identities = 96/107 (89%), Positives = 100/107 (93%), Gaps = 1/107 (0%)
Query: 1 MRAGEADSPAP-PPLTRQSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGGGWEEDYQ 59
MR GEADSPAP PP + +SGCGPFKKWR+R GCGDWGGGAG CGGGCGAAPGGGWEEDYQ
Sbjct: 16 MRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGGGWEEDYQ 75
Query: 60 RGLRETQGRTHRSPVVRTSLIGLLLGFPVKEELRGAGWAARTPLGIR 106
RGLRETQGRTHRSPVVRTS+IGLLLGFPVKEELRG GWAARTPLGIR
Sbjct: 76 RGLRETQGRTHRSPVVRTSVIGLLLGFPVKEELRGVGWAARTPLGIR 122
>gi|239748504 PREDICTED: hypothetical protein XP_002346687 [Homo
sapiens]
Length = 122
Score = 211 bits (538), Expect = 8e-56
Identities = 96/107 (89%), Positives = 100/107 (93%), Gaps = 1/107 (0%)
Query: 1 MRAGEADSPAP-PPLTRQSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGGGWEEDYQ 59
MR GEADSPAP PP + +SGCGPFKKWR+R GCGDWGGGAG CGGGCGAAPGGGWEEDYQ
Sbjct: 16 MRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGGGWEEDYQ 75
Query: 60 RGLRETQGRTHRSPVVRTSLIGLLLGFPVKEELRGAGWAARTPLGIR 106
RGLRETQGRTHRSPVVRTS+IGLLLGFPVKEELRG GWAARTPLGIR
Sbjct: 76 RGLRETQGRTHRSPVVRTSVIGLLLGFPVKEELRGVGWAARTPLGIR 122
>gi|239743823 PREDICTED: hypothetical protein XP_002344302 [Homo
sapiens]
Length = 122
Score = 211 bits (538), Expect = 8e-56
Identities = 96/107 (89%), Positives = 100/107 (93%), Gaps = 1/107 (0%)
Query: 1 MRAGEADSPAP-PPLTRQSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGGGWEEDYQ 59
MR GEADSPAP PP + +SGCGPFKKWR+R GCGDWGGGAG CGGGCGAAPGGGWEEDYQ
Sbjct: 16 MRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGGGWEEDYQ 75
Query: 60 RGLRETQGRTHRSPVVRTSLIGLLLGFPVKEELRGAGWAARTPLGIR 106
RGLRETQGRTHRSPVVRTS+IGLLLGFPVKEELRG GWAARTPLGIR
Sbjct: 76 RGLRETQGRTHRSPVVRTSVIGLLLGFPVKEELRGVGWAARTPLGIR 122
>gi|239743739 PREDICTED: hypothetical protein XP_002342949 [Homo
sapiens]
Length = 94
Score = 43.5 bits (101), Expect = 4e-05
Identities = 35/90 (38%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 1 MRAGEADSPAPPPLTRQSGCGPFKKWRRRRGCGDWGGGAGACGGGCG---AAPGGGWEED 57
MR GEADSPAPPPLTRQS K GG A A G G A +
Sbjct: 16 MRTGEADSPAPPPLTRQSQAADLLK---------NGGDAAAAGTGAAVLEVAAAAAAQPG 66
Query: 58 YQRGLRETQGRTHRSPVVRTSLIGLLLGFP 87
G R T+G R R IG+L P
Sbjct: 67 AAGGKRTTRGACGRP---RVGPIGVLSSGP 93
>gi|169208912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 38.5 bits (88), Expect = 0.001
Identities = 26/54 (48%), Positives = 28/54 (51%), Gaps = 11/54 (20%)
Query: 2 RAGEADSPAPPPLTRQSGCG-PFKKWRRRRGCGDWGGG--AGACGGGCGAAPGG 52
R G A +PPP +G G P WRR GD G G G GG CGAAPGG
Sbjct: 30 RTGRAPPQSPPP----AGPGAPGAPWRR----GDEGPGPAGGEAGGPCGAAPGG 75
>gi|169208667 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 38.5 bits (88), Expect = 0.001
Identities = 26/54 (48%), Positives = 28/54 (51%), Gaps = 11/54 (20%)
Query: 2 RAGEADSPAPPPLTRQSGCG-PFKKWRRRRGCGDWGGG--AGACGGGCGAAPGG 52
R G A +PPP +G G P WRR GD G G G GG CGAAPGG
Sbjct: 30 RTGRAPPQSPPP----AGPGAPGAPWRR----GDEGPGPAGGEAGGPCGAAPGG 75
>gi|169208084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 38.5 bits (88), Expect = 0.001
Identities = 26/54 (48%), Positives = 28/54 (51%), Gaps = 11/54 (20%)
Query: 2 RAGEADSPAPPPLTRQSGCG-PFKKWRRRRGCGDWGGG--AGACGGGCGAAPGG 52
R G A +PPP +G G P WRR GD G G G GG CGAAPGG
Sbjct: 30 RTGRAPPQSPPP----AGPGAPGAPWRR----GDEGPGPAGGEAGGPCGAAPGG 75
>gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
[Homo sapiens]
Length = 589
Score = 37.4 bits (85), Expect = 0.003
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 33 GDWGGGAGACGGGCGAAPGGGWEEDYQRGLRETQGRTHRSPVV 75
GD GG G GGG GAA GGG E+Y + +T SPVV
Sbjct: 67 GDQHGGGGGGGGGAGAAGGGGGGENY-----DDPHKTPASPVV 104
>gi|122891874 keratin associated protein 5-5 [Homo sapiens]
Length = 237
Score = 37.4 bits (85), Expect = 0.003
Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 16 RQSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGGG 53
R SGCG GCG G G G CG GCG G G
Sbjct: 17 RGSGCGGCGS-----GCGGCGSGCGGCGSGCGGCGGCG 49
Score = 33.9 bits (76), Expect = 0.029
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 19 GCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGG 52
GCG GCG G G G CG GCG G
Sbjct: 9 GCGS--------GCGGRGSGCGGCGSGCGGCGSG 34
Score = 33.9 bits (76), Expect = 0.029
Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 9/36 (25%)
Query: 18 SGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGGG 53
SGCG GCG GG G CG GC G G
Sbjct: 33 SGCG---------GCGSGCGGCGGCGSGCAGCGGCG 59
Score = 30.4 bits (67), Expect = 0.32
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 17 QSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGG 52
+ GCG + GCG GG G C G CG + GG
Sbjct: 116 KGGCGSCGG--SKGGCGSCGGSKGGC-GSCGGSKGG 148
Score = 29.6 bits (65), Expect = 0.55
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 9/35 (25%)
Query: 18 SGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGG 52
SGCG GCG GG G+ GGCG G
Sbjct: 26 SGCG---------GCGSGCGGCGSGCGGCGGCGSG 51
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 32 CGDWGGGAGACG---GGCGAAPG 51
CG GG G+CG GGCG+ G
Sbjct: 112 CGGSKGGCGSCGGSKGGCGSCGG 134
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 18 SGCGPFKKWRRRRGCGDWGGGAGACGGGC 46
SGCG GCG G G CG GC
Sbjct: 40 SGCGGCG------GCGSGCAGCGGCGSGC 62
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 17 QSGCGPFKKWRRRRGCGDWGGGAGACG------GGCGAAPG 51
+ GCG +RGC G GACG GGCG+ G
Sbjct: 86 KGGCGSCGG--SKRGCVSCGVSKGACGSCGGSKGGCGSCGG 124
>gi|32171221 GRP1 (general receptor for phosphoinositides
1)-associated scaffold protein [Homo sapiens]
Length = 395
Score = 35.4 bits (80), Expect = 0.010
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 4 GEADSPA---PPPLTRQSGCGPFKKWRRRRGCGDWGG--------GAGACGGGCGAAPGG 52
G+++ PA PPP R G GP + G G AG GGG G APG
Sbjct: 291 GDSEPPALPPPPPPARAFGPGPAETPAVGPGPGPRAALSRSASVRCAGPGGGGGGGAPGA 350
Query: 53 GWEEDYQR-----GLRETQGRTHRSPVVR 76
W E ++ GLR+T+ R+ R +++
Sbjct: 351 LWTEAREQALCGPGLRKTKYRSFRRRLLK 379
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 35.4 bits (80), Expect = 0.010
Identities = 19/38 (50%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 31 GCGDWGGGAGACGGGCGAAPGGGWEEDYQRGLRETQGR 68
G G WGGG G GGG G GGGW G QGR
Sbjct: 355 GRGGWGGGGGGWGGGGGG--GGGWGGGGGGGRGGFQGR 390
Score = 35.0 bits (79), Expect = 0.013
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 2 RAGEADSPAP---PPLTRQSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGGGW 54
R E + P P P RQ G G W G G GGG G G G GGGW
Sbjct: 311 RPNEIEPPPPEMPPWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGW 366
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 29 RRGCGDWGGGAGACGGGCGAAPGGG 53
R G G GGG G GGG G GGG
Sbjct: 356 RGGWGGGGGGWGGGGGGGGGWGGGG 380
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 30 RGCGDWGGGAGACGGGCGAAPGGGW 54
RG GD GG G GGG G GGG+
Sbjct: 408 RGYGDPYGGGGGGGGGGGG--GGGY 430
>gi|31542255 hypothetical protein LOC140706 [Homo sapiens]
Length = 433
Score = 35.4 bits (80), Expect = 0.010
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 26 WRRRRGCGDWGGGAGACGGG-----CGAAPGGGWE 55
W RR G G GGGAG GG G+ GG WE
Sbjct: 247 WERRHGGGGGGGGAGKPGGSWERRQAGSGGGGSWE 281
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 16 RQSGCGPFKKWRRRRG-CGDWGGGAGACGGGCGAA-PGGGWE 55
+++G W RR+ G W G GGG GA PGG WE
Sbjct: 227 QRAGARASGSWERRQTFSGSWERRHGGGGGGGGAGKPGGSWE 268
>gi|60593038 keratin associated protein 5-4 [Homo sapiens]
Length = 288
Score = 35.0 bits (79), Expect = 0.013
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 18 SGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGG 52
SGCG GCG G G G CG GCG G
Sbjct: 12 SGCGGCGS-----GCGGCGSGCGGCGSGCGGCGSG 41
Score = 34.3 bits (77), Expect = 0.022
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 19 GCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGG 52
GCG GCG G G G CG GCG G
Sbjct: 9 GCGS--------GCGGCGSGCGGCGSGCGGCGSG 34
Score = 33.5 bits (75), Expect = 0.038
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 18 SGCGPFKKWRRRRGCGDWGGGAGACGGGCG 47
SGCG GCG G G G CG GCG
Sbjct: 19 SGCGGCGS-----GCGGCGSGCGGCGSGCG 43
Score = 30.4 bits (67), Expect = 0.32
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 17 QSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGG 52
+ GCG + GCG GG G C G CG + GG
Sbjct: 98 KGGCGSCGG--SKGGCGSCGGSKGGC-GSCGGSKGG 130
Score = 30.4 bits (67), Expect = 0.32
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 17 QSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGG 52
+ GCG + GCG GG G C G CG + GG
Sbjct: 158 KGGCGSCGG--SKGGCGSCGGSKGGC-GSCGGSKGG 190
Score = 29.3 bits (64), Expect = 0.72
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 31 GC-GDWGGGAGACGGGCGAAPGG 52
GC G G G G CG GCG G
Sbjct: 5 GCSGGCGSGCGGCGSGCGGCGSG 27
Score = 28.9 bits (63), Expect = 0.94
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 18 SGCGPFKKWRRRRGCGDWGGGAGACGGGC 46
SGCG GCG G G G CG C
Sbjct: 26 SGCGGCGS-----GCGGCGSGCGGCGSSC 49
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 32 CGDWGGGAGACG---GGCGAAPG 51
CG GG G+CG GGCG+ G
Sbjct: 94 CGGSKGGCGSCGGSKGGCGSCGG 116
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 32 CGDWGGGAGACG---GGCGAAPG 51
CG GG G+CG GGCG+ G
Sbjct: 154 CGGSKGGCGSCGGSKGGCGSCGG 176
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 31 GCGDWGGGAGACGGGCGAAPGG 52
GC GG G+ GGCG+ GG
Sbjct: 2 GCCGCSGGCGSGCGGCGSGCGG 23
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 17 QSGCGPFKKWRRRRGCGDWGGGAGAC------GGGCGAAPG 51
+ GCG + GCG GG G C GGCG+ G
Sbjct: 108 KGGCGSCGG--SKGGCGSCGGSKGGCVSCGGSKGGCGSCGG 146
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 6/27 (22%)
Query: 32 CGDWGGGAGACGG------GCGAAPGG 52
CG GG G+CGG CG + GG
Sbjct: 134 CGGSKGGCGSCGGSKGGCVSCGGSKGG 160
Score = 26.9 bits (58), Expect = 3.6
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 17 QSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGG 52
+ GCG + GC GG G C G CG + GG
Sbjct: 118 KGGCGSCGG--SKGGCVSCGGSKGGC-GSCGGSKGG 150
Score = 26.9 bits (58), Expect = 3.6
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Query: 31 GCGDWGGGAGAC------GGGCGAAPG 51
GCG GG G C GGCG+ G
Sbjct: 140 GCGSCGGSKGGCVSCGGSKGGCGSCGG 166
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 6/27 (22%)
Query: 32 CGDWGGGAGACGG------GCGAAPGG 52
CG GG G+CGG CG + GG
Sbjct: 74 CGGSKGGYGSCGGSKGGCVSCGGSKGG 100
>gi|100913206 DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapiens]
Length = 1270
Score = 34.7 bits (78), Expect = 0.017
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 14/81 (17%)
Query: 7 DSPAPPPLTRQSGCGPFKKWRRRRGCGDWGGG-------AGACGG-------GCGAAPGG 52
D P PP + R +++ G +GGG +G GG G GA GG
Sbjct: 1157 DGPRPPKMARYDNGSGYRRGGSSYSGGGYGGGYSSGGYGSGGYGGSANSFRAGYGAGVGG 1216
Query: 53 GWEEDYQRGLRETQGRTHRSP 73
G+ + G R G +R P
Sbjct: 1217 GYRGVSRGGFRGNSGGDYRGP 1237
>gi|89038927 PREDICTED: similar to U2 small nuclear RNA auxillary
factor 1 [Homo sapiens]
Length = 243
Score = 33.9 bits (76), Expect = 0.029
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 16 RQSGCGPFKKWRRRRG--------CGDWGGGAGACGGGCGAAPGGGWEEDYQRGLRETQ 66
R+ CG +K R R GD G G G GGG G GGG E +R LR+ +
Sbjct: 180 RRELCGQRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRE 238
>gi|89038281 PREDICTED: similar to U2 small nuclear RNA auxillary
factor 1 [Homo sapiens]
Length = 243
Score = 33.9 bits (76), Expect = 0.029
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 16 RQSGCGPFKKWRRRRG--------CGDWGGGAGACGGGCGAAPGGGWEEDYQRGLRETQ 66
R+ CG +K R R GD G G G GGG G GGG E +R LR+ +
Sbjct: 180 RRELCGQRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRE 238
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 33.9 bits (76), Expect = 0.029
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 8 SPAPP-PLTRQSGCGPFKKWRRRRGCGDWGGGA---GACGGGCGAAPGGGW 54
+P PP + SG G GCG +GGG G+ G GCG + GGG+
Sbjct: 9 TPQPPVDCVKTSGGGGGGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGGGGY 59
Score = 31.6 bits (70), Expect = 0.14
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 31 GCGDWGGGAGACGGGCGAAPGGG 53
GCG + GG G GGGCG GG
Sbjct: 50 GCG-YSGGGGYSGGGCGGGSSGG 71
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 33 GDWGGGAGACGGGCGAA---PGGG 53
G GGG G CGGG G + GGG
Sbjct: 71 GGGGGGIGGCGGGSGGSVKYSGGG 94
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 31 GCGDWGGGAGACGGGCGAAPGG 52
G G GGG G GGCG GG
Sbjct: 65 GGGSSGGGGGGGIGGCGGGSGG 86
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 19 GCGPFKKWRRRRGCGDWGGGAGACGG-GCGAAPGGG 53
G G F GC GGG + GG GC ++ GGG
Sbjct: 100 GSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGG 135
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 31 GCGDWGGGAGAC------GGGCGAAPGGGWEEDYQRGLRETQ 66
GC GGG G+ G GCG GG Y + TQ
Sbjct: 175 GCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQ 216
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 17 QSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGGG 53
Q+ C P + G G GGG G+ G GC ++ GGG
Sbjct: 216 QTSCAPQPSY----GGGSSGGG-GSGGSGCFSSGGGG 247
Score = 26.2 bits (56), Expect = 6.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 31 GCGDWGGGAGACGGGCGAAPGGG 53
G G GGG+G G G + GGG
Sbjct: 118 GGGSSGGGSGCFSSGGGGSSGGG 140
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 31 GCGDWGGGAGACGG-GCGAAPGGGW 54
GC GGG + GG GC ++ GGG+
Sbjct: 127 GCFSSGGGGSSGGGSGCFSSGGGGF 151
>gi|124430557 a disintegrin-like and metalloprotease with
thrombospondin type 1 motifs 20 [Homo sapiens]
Length = 1910
Score = 33.9 bits (76), Expect = 0.029
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 3 AGEADSPAPPPLTRQSGCGPFKKWRRRRGCGDWGGGAGACGGG 45
A D+ + PP +Q G GP +W G+WG + CGGG
Sbjct: 1339 ASYCDAASKPPELQQCGPGPCPQW----NYGNWGECSQTCGGG 1377
>gi|54400749 keratin associated protein 5-1 [Homo sapiens]
Length = 278
Score = 33.9 bits (76), Expect = 0.029
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 31 GCGDWGGGAGACGGGCGAAPGG 52
GCG GG G CG GCG G
Sbjct: 186 GCGSCGGSKGGCGSGCGGCGSG 207
Score = 33.1 bits (74), Expect = 0.050
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 8/31 (25%)
Query: 19 GCGPFKKWRRRRGCGDWGGGAGACGGGCGAA 49
GCG GCG G G G CG GCG +
Sbjct: 16 GCGS--------GCGGCGSGCGGCGSGCGGS 38
Score = 32.7 bits (73), Expect = 0.065
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 17 QSGCGPFKKWRRRRGCGDWGGGAGACGGGCG 47
+ GCG + GCG GG G CG GCG
Sbjct: 96 KGGCGSCGG--SKGGCGSCGGSKGGCGSGCG 124
Score = 32.3 bits (72), Expect = 0.085
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 17 QSGCGPFKKWRRRRGCGDWGGGAGACG------GGCGAAPGG 52
+ GCG + GCG GG G CG GGCG+ GG
Sbjct: 86 KGGCGSCGG--SKGGCGSCGGSKGGCGSCGGSKGGCGSGCGG 125
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 19 GCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGG 52
GCG CG G G G CG GCG G
Sbjct: 9 GCGS--------SCGGCGSGCGGCGSGCGGCGSG 34
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 12/39 (30%)
Query: 17 QSGCGPFKKWRRRRGCGDWGGGAGACG---GGCGAAPGG 52
+ GCG CG GG G+CG GGCG+ GG
Sbjct: 174 KGGCG---------SCGGCKGGCGSCGGSKGGCGSGCGG 203
Score = 30.4 bits (67), Expect = 0.32
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 13/45 (28%)
Query: 13 PLTRQSGCGPFKKWRRRRGCGDWGGGAGACG------GGCGAAPG 51
P S CG + GCG GG G CG GGCG+ G
Sbjct: 57 PTCSCSSCG-------KGGCGSSGGSKGGCGSCGGCKGGCGSCGG 94
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 17 QSGCGPFKKWRRRRGCGDWGGGAGACG------GGCGAAPG 51
+ GCG + GCG GG G CG GGCG+ G
Sbjct: 66 KGGCG--SSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGG 104
Score = 30.0 bits (66), Expect = 0.42
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 31 GCGDWGGGAGACGGGCGAAPGG 52
GCG GG G+ GGCG+ GG
Sbjct: 16 GCGSGCGGCGSGCGGCGSGCGG 37
Score = 28.9 bits (63), Expect = 0.94
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 13/45 (28%)
Query: 13 PLTRQSGCGPFKKWRRRRGCGDWGGGAGACG------GGCGAAPG 51
P S CG + GCG G GACG GGCG+ G
Sbjct: 145 PACSCSSCG-------KGGCGSCGCSKGACGSCGGSKGGCGSCGG 182
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 17 QSGCGPFKKWRRRRG-CGDWGGGAGACG---GGCGAAPG 51
+ GCG + G CG GG G+CG GGCG+ G
Sbjct: 154 KGGCGSCGCSKGACGSCGGSKGGCGSCGGCKGGCGSCGG 192
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 31 GCGDWGGGAGACGGGCGAAPGG 52
GC GG G+ GGCG+ GG
Sbjct: 2 GCCGCSGGCGSSCGGCGSGCGG 23
Score = 26.9 bits (58), Expect = 3.6
Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 31 GC-GDWGGGAGACGGGCGAAPGG 52
GC G G G CG GCG G
Sbjct: 5 GCSGGCGSSCGGCGSGCGGCGSG 27
>gi|60593040 keratin associated protein 5-10 [Homo sapiens]
Length = 202
Score = 33.5 bits (75), Expect = 0.038
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 19 GCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGG 52
GCG GCG G G G CG GCG G
Sbjct: 9 GCGS--------GCGGCGSGCGGCGSGCGGYGSG 34
Score = 30.4 bits (67), Expect = 0.32
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 18 SGCGPFKKWRRRRGCGDWGGGAGACGGGC 46
SGCG GCG +G G G CG C
Sbjct: 19 SGCGGCGS-----GCGGYGSGCGGCGSSC 42
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 17 QSGCGPFKKWRRRRGCGDWGGGAGACG------GGCGAAPG 51
+ GCG + GCG GG G CG GGCG+ G
Sbjct: 81 KGGCGSCGG--SKGGCGSCGGSKGGCGSCGGSKGGCGSCGG 119
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 17 QSGCGPFKKWRRRRGCGDWGGGAGACG------GGCGAAPG 51
+ GCG + GCG GG G CG GGCG+ G
Sbjct: 91 KGGCGSCGG--SKGGCGSCGGSKGGCGSCGGSKGGCGSCGG 129
Score = 30.4 bits (67), Expect = 0.32
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 17 QSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGG 52
+ GCG + GCG GG G C G CG + GG
Sbjct: 101 KGGCGSCGG--SKGGCGSCGGSKGGC-GSCGGSKGG 133
Score = 29.3 bits (64), Expect = 0.72
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 31 GC-GDWGGGAGACGGGCGAAPGG 52
GC G G G G CG GCG G
Sbjct: 5 GCSGGCGSGCGGCGSGCGGCGSG 27
Score = 29.3 bits (64), Expect = 0.72
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 18 SGCGPFKKWRRRRGCGDWGGGAGACGGGCG 47
SGCG GCG G G G G GCG
Sbjct: 12 SGCGGCGS-----GCGGCGSGCGGYGSGCG 36
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 32 CGDWGGGAGACG---GGCGAAPG 51
CG GG G+CG GGCG+ G
Sbjct: 77 CGGSKGGCGSCGGSKGGCGSCGG 99
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 31 GCGDWGGGAGACGGGCGAAPGG 52
GC GG G+ GGCG+ GG
Sbjct: 2 GCCGCSGGCGSGCGGCGSGCGG 23
Score = 26.9 bits (58), Expect = 3.6
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 6/26 (23%)
Query: 32 CGDWGGGAGACG------GGCGAAPG 51
CG GG G CG GGCG+ G
Sbjct: 64 CGSCGGSKGDCGSCGGSKGGCGSCGG 89
>gi|53292629 keratin associated protein 5-11 [Homo sapiens]
Length = 156
Score = 33.1 bits (74), Expect = 0.050
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 8/29 (27%)
Query: 19 GCGPFKKWRRRRGCGDWGGGAGACGGGCG 47
GCG GCG G G+G CG GCG
Sbjct: 9 GCGS--------GCGGCGSGSGGCGSGCG 29
Score = 31.2 bits (69), Expect = 0.19
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 31 GCGDWGGGAGACGGGCGAAPGG 52
GCG GG G+ GGCG+ GG
Sbjct: 9 GCGSGCGGCGSGSGGCGSGCGG 30
Score = 30.0 bits (66), Expect = 0.42
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 9/32 (28%)
Query: 18 SGCGPFKKWRRRRGCGDWGGGAGACGGGCGAA 49
SGCG GCG GG G+ GGCG++
Sbjct: 12 SGCG---------GCGSGSGGCGSGCGGCGSS 34
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 31 GCGDWGGGAGACGGGCGAAPGG 52
GC GG G+ GGCG+ GG
Sbjct: 2 GCCGCSGGCGSGCGGCGSGSGG 23
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 32 CGDWGGGAGACGGGCGAAPGG 52
CG GG G C G CG++ GG
Sbjct: 57 CGSCGGSKGGC-GSCGSSKGG 76
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
Query: 32 CGDWGGGAGACG---GGCGA 48
CG GG G+CG GGCG+
Sbjct: 60 CGGSKGGCGSCGSSKGGCGS 79
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 33.1 bits (74), Expect = 0.050
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 9 PAPPPLTRQSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAA 49
PAPPP +R C ++W R G G AGAC C A
Sbjct: 134 PAPPPASRDCRCRRPRRWPR---AGRRGRRAGACKPSCAGA 171
Score = 26.9 bits (58), Expect = 3.6
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 4 GEADSPAPPPLTRQSGCGPFKKWRRRRGCGD-WGGGAGACGGGCGAA 49
G +P P P RRRR C +GACG G AA
Sbjct: 192 GARTAPTPAPTCASPSAAASSCCRRRRACSSPTTAWSGACGAGPTAA 238
>gi|5032007 purine-rich element binding protein A [Homo sapiens]
Length = 322
Score = 32.7 bits (73), Expect = 0.065
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 31 GCGDWGGGAGACGGGCGAAPGG 52
G G GGG G GGG G APGG
Sbjct: 32 GGGGGGGGGGGSGGGGGGAPGG 53
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 31 GCGDWGGGAGACGGGCGAAPGGG 53
G G GG G GGG G + GGG
Sbjct: 25 GSGSGSGGGGGGGGGGGGSGGGG 47
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 31 GCGDWGGGAGACGGGCGAAPGGG 53
G G GGG G GGG GGG
Sbjct: 27 GSGSGGGGGGGGGGGGSGGGGGG 49
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 33 GDWGGGAGACGGGCGAAPGGG 53
G G G+G+ GGG G GGG
Sbjct: 22 GHPGSGSGSGGGGGGGGGGGG 42
>gi|239749372 PREDICTED: hypothetical protein XP_002347017 [Homo
sapiens]
Length = 212
Score = 32.7 bits (73), Expect = 0.065
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 2 RAGEADSPAPPPLTRQSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGGGWEEDYQRG 61
R G + PPP + G PF+ G GGG G G G + P GW + +R
Sbjct: 144 RLGRGQATPPPPRDPRPGTAPFQAVGGTLG----GGGTGRRGRGF-SVPRKGWRRERERA 198
Query: 62 LRET 65
+ T
Sbjct: 199 FQAT 202
>gi|239743509 PREDICTED: hypothetical protein XP_002342878 [Homo
sapiens]
Length = 212
Score = 32.7 bits (73), Expect = 0.065
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 2 RAGEADSPAPPPLTRQSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGGGWEEDYQRG 61
R G + PPP + G PF+ G GGG G G G + P GW + +R
Sbjct: 144 RLGRGQATPPPPRDPRPGTAPFQAVGGTLG----GGGTGRRGRGF-SVPRKGWRRERERA 198
Query: 62 LRET 65
+ T
Sbjct: 199 FQAT 202
>gi|187761373 ariadne ubiquitin-conjugating enzyme E2 binding
protein homolog 1 [Homo sapiens]
Length = 557
Score = 32.7 bits (73), Expect = 0.065
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 36 GGGAGACGGGCGAAPGGGWEEDYQ 59
GGG G GGG G PG EEDY+
Sbjct: 77 GGGGGGGGGGGGGGPGHEQEEDYR 100
>gi|60279697 keratin associated protein 5-7 [Homo sapiens]
Length = 165
Score = 32.7 bits (73), Expect = 0.065
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 8/29 (27%)
Query: 19 GCGPFKKWRRRRGCGDWGGGAGACGGGCG 47
GCG GCG G G G CG GCG
Sbjct: 9 GCGS--------GCGGCGSGCGGCGSGCG 29
Score = 30.0 bits (66), Expect = 0.42
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 31 GCGDWGGGAGACGGGCGAAPGG 52
GCG GG G+ GGCG+ GG
Sbjct: 9 GCGSGCGGCGSGCGGCGSGCGG 30
Score = 30.0 bits (66), Expect = 0.42
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 31 GCGDWGGGAGACGGGCGAAPGG 52
GCG GG G C G CG + GG
Sbjct: 66 GCGSCGGSKGGC-GSCGGSKGG 86
Score = 28.9 bits (63), Expect = 0.94
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 18 SGCGPFKKWRRRRGCGDWGGGAGACGGGC 46
SGCG GCG G G G CG C
Sbjct: 12 SGCGGCGS-----GCGGCGSGCGGCGSSC 35
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 32 CGDWGGGAGACG---GGCGAAPG 51
CG GG G+CG GGCG+ G
Sbjct: 60 CGGSKGGCGSCGGSKGGCGSCGG 82
>gi|51972220 keratin associated protein 5-2 [Homo sapiens]
Length = 177
Score = 32.7 bits (73), Expect = 0.065
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 30 RGCGDWGGGAGACGGGCGAAPGG 52
RGCG GG G+ GGCG+ GG
Sbjct: 8 RGCGSGCGGCGSSCGGCGSGCGG 30
Score = 32.3 bits (72), Expect = 0.085
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 8/29 (27%)
Query: 19 GCGPFKKWRRRRGCGDWGGGAGACGGGCG 47
GCG GCG G G G CG GCG
Sbjct: 23 GCGS--------GCGGCGSGRGGCGSGCG 43
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 19 GCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGG 52
GCG GCG G G CG GCG G
Sbjct: 9 GCGS--------GCGGCGSSCGGCGSGCGGCGSG 34
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 9/35 (25%)
Query: 18 SGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGG 52
SGCG GCG GG G+ GGCG+ GG
Sbjct: 12 SGCG---------GCGSSCGGCGSGCGGCGSGRGG 37
Score = 30.4 bits (67), Expect = 0.32
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 31 GCGDWGGGAGACGGGCGAAPGG 52
GCG GG G+ GGCG+ GG
Sbjct: 23 GCGSGCGGCGSGRGGCGSGCGG 44
Score = 30.4 bits (67), Expect = 0.32
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 9/35 (25%)
Query: 18 SGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGG 52
SGCG GCG GG G+ GGC ++ GG
Sbjct: 26 SGCG---------GCGSGRGGCGSGCGGCSSSCGG 51
Score = 30.0 bits (66), Expect = 0.42
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 31 GCGDWGGGAGACGGGCGAAPGG 52
GCG GG G C G CG + GG
Sbjct: 87 GCGSCGGSKGGC-GSCGGSKGG 107
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 32 CGDWGGGAGACG---GGCGAAPG 51
CG GG G+CG GGCG+ G
Sbjct: 81 CGGSKGGCGSCGGSKGGCGSCGG 103
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 32.3 bits (72), Expect = 0.085
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 24 KKWRRRRGCGDWGGGAGACGGGCGAAPGGGWEEDYQ 59
K+ ++ GCG G G GGG G++ GGG + Y+
Sbjct: 73 KRGKKSAGCG----GGGGAGGGGGSSSGGGSPQSYE 104
Score = 28.9 bits (63), Expect = 0.94
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 5 EADSPAPPPLTRQSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGGGWEEDYQRG 61
E D PP R G K+ RR G G GA GGG G G +RG
Sbjct: 23 EPDRQQPPSGKR----GGRKRRSSRRSAGGGAGPGGAAGGGVGGGDEPGSPAQGKRG 75
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 33 GDWGGGAGACGGGCGAAPGGG 53
G G + CGGG GA GGG
Sbjct: 72 GKRGKKSAGCGGGGGAGGGGG 92
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.143 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,969,731
Number of Sequences: 37866
Number of extensions: 337611
Number of successful extensions: 4574
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 155
Number of HSP's that attempted gapping in prelim test: 2349
Number of HSP's gapped (non-prelim): 1708
length of query: 106
length of database: 18,247,518
effective HSP length: 76
effective length of query: 30
effective length of database: 15,369,702
effective search space: 461091060
effective search space used: 461091060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.