Guide to the Human Genome
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Name: LOC100286907 Sequence: fasta or formatted (212aa) NCBI GI: 239743509
Description:

PREDICTED: hypothetical protein XP_002342878

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.1         32           3
 C cysteine            2.4          5           2
 D aspartate           0.9          2           1
 E glutamate           2.8          6           1
 F phenylalanine       2.4          5           1
 G glycine            11.8         25           4
 H histidine           2.4          5           1
 I isoleucine          0.5          1           1
 K lysine              2.8          6           2
 L leucine             7.1         15           1
 M methionine          0.5          1           1
 N asparagine          0.9          2           1
 P proline            13.2         28           4
 Q glutamine           3.3          7           1
 R arginine           12.3         26           3
 S serine              7.1         15           3
 T threonine           9.9         21           2
 V valine              3.8          8           1
 W tryptophan          0.9          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342878 
LOC100291356          1.000   PREDICTED: hypothetical protein XP_002347017 
LOC100130360          0.048   PREDICTED: hypothetical protein 
BSN                   0.048   bassoon protein 
MYPOP                 0.046   Myb protein P42POP 
MUC7                  0.046   mucin 7, secreted precursor 
MUC7                  0.046   mucin 7, secreted precursor 
MUC7                  0.046   mucin 7, secreted precursor 
IRS1                  0.041   insulin receptor substrate 1 
TBC1D10B              0.041   TBC1 domain family, member 10B 
FLJ37078              0.041   hypothetical protein LOC222183 
SRCAP                 0.039   Snf2-related CBP activator protein 
NUMBL                 0.039   numb homolog (Drosophila)-like 
LOC401180             0.036   PREDICTED: similar to hCG1745223 
LOC401180             0.036   PREDICTED: similar to hCG1745223 
LOC401180             0.036   PREDICTED: similar to hCG1745223 
LOC729575             0.036   PREDICTED: hypothetical protein 
LOC100288110          0.036   PREDICTED: hypothetical protein 
LOC100288110          0.036   PREDICTED: hypothetical protein XP_002343007 
MAP7                  0.036   microtubule-associated protein 7 
CIC                   0.036   capicua homolog 
LOC728888             0.036   PREDICTED: similar to acyl-CoA synthetase medium-ch...
LOC100291533          0.034   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.034   PREDICTED: hypothetical protein XP_002342946 
TAF4                  0.034   TBP-associated factor 4 
UNCX                  0.034   UNC homeobox 
NACA                  0.034   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.034   PREDICTED: hypothetical protein LOC80164 
AGRN                  0.034   agrin 
MUC2                  0.034   mucin 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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