Guide to the Human Genome
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Name: LOC100288850 Sequence: fasta or formatted (106aa) NCBI GI: 239746552
Description:

PREDICTED: hypothetical protein XP_002343776

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         10           2
 C cysteine            3.8          4           1
 D aspartate           2.8          3           1
 E glutamate           5.7          6           2
 F phenylalanine       1.9          2           1
 G glycine            21.7         23           3
 H histidine           0.9          1           1
 I isoleucine          1.9          2           1
 K lysine              2.8          3           2
 L leucine             7.5          8           3
 M methionine          0.9          1           1
 N asparagine          0.0          0           0
 P proline             8.5          9           3
 Q glutamine           2.8          3           1
 R arginine           13.2         14           4
 S serine              3.8          4           1
 T threonine           4.7          5           1
 V valine              2.8          3           2
 W tryptophan          3.8          4           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343776 
LOC100291981          0.894   PREDICTED: hypothetical protein XP_002346204 
LOC100290176          0.894   PREDICTED: hypothetical protein XP_002346687 
LOC100287168          0.894   PREDICTED: hypothetical protein XP_002344302 
LOC100288972          0.091   PREDICTED: hypothetical protein XP_002342949 
LOC100128979          0.067   PREDICTED: hypothetical protein 
LOC100128979          0.067   PREDICTED: hypothetical protein 
LOC100128979          0.067   PREDICTED: hypothetical protein 
HNRNPL                0.058   heterogeneous nuclear ribonucleoprotein L isoform a ...
KRTAP5-5              0.058   keratin associated protein 5-5 
GRASP                 0.048   GRP1 (general receptor for phosphoinositides 1)-asso...
FAM98B                0.048   family with sequence similarity 98, member B isofor...
C20orf160             0.048   hypothetical protein LOC140706 
KRTAP5-4              0.048   keratin associated protein 5-4 
DHX9                  0.048   DEAH (Asp-Glu-Ala-His) box polypeptide 9 
LOC441722             0.043   PREDICTED: similar to U2 small nuclear RNA auxillary...
LOC441722             0.043   PREDICTED: similar to U2 small nuclear RNA auxillary...
LOR                   0.043   loricrin 
ADAMTS20              0.043   a disintegrin-like and metalloprotease with thrombo...
KRTAP5-1              0.043   keratin associated protein 5-1 
KRTAP5-10             0.038   keratin associated protein 5-10 
KRTAP5-11             0.038   keratin associated protein 5-11 
C10orf95              0.038   hypothetical protein LOC79946 
PURA                  0.038   purine-rich element binding protein A 
LOC100291356          0.038   PREDICTED: hypothetical protein XP_002347017 
LOC100286907          0.038   PREDICTED: hypothetical protein XP_002342878 
ARIH1                 0.038   ariadne ubiquitin-conjugating enzyme E2 binding pro...
KRTAP5-7              0.038   keratin associated protein 5-7 
KRTAP5-2              0.038   keratin associated protein 5-2 
TWIST1                0.034   twist 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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