Guide to the Human Genome
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Name: LOC100291981 Sequence: fasta or formatted (122aa) NCBI GI: 239755061
Description:

PREDICTED: hypothetical protein XP_002346204

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         13           3
 C cysteine            3.3          4           1
 D aspartate           2.5          3           1
 E glutamate           5.7          7           2
 F phenylalanine       1.6          2           1
 G glycine            20.5         25           3
 H histidine           0.8          1           1
 I isoleucine          1.6          2           1
 K lysine              3.3          4           2
 L leucine             4.9          6           3
 M methionine          1.6          2           1
 N asparagine          0.0          0           0
 P proline             8.2         10           2
 Q glutamine           2.5          3           1
 R arginine            9.8         12           1
 S serine              4.9          6           1
 T threonine           6.6          8           1
 V valine              6.6          8           2
 W tryptophan          3.3          4           1
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346204 
LOC100290176          1.000   PREDICTED: hypothetical protein XP_002346687 
LOC100287168          1.000   PREDICTED: hypothetical protein XP_002344302 
LOC100288850          0.782   PREDICTED: hypothetical protein XP_002343776 
LOC100288972          0.130   PREDICTED: hypothetical protein XP_002342949 
HNRNPL                0.071   heterogeneous nuclear ribonucleoprotein L isoform a ...
FAM98B                0.063   family with sequence similarity 98, member B isofor...
KRTAP5-1              0.063   keratin associated protein 5-1 
KRTAP5-5              0.059   keratin associated protein 5-5 
HOXC13                0.055   homeobox C13 
LOR                   0.055   loricrin 
AR                    0.050   androgen receptor isoform 1 
PURA                  0.050   purine-rich element binding protein A 
KRTAP5-4              0.050   keratin associated protein 5-4 
SOX4                  0.050   SRY (sex determining region Y)-box 4 
KRTAP5-10             0.050   keratin associated protein 5-10 
RFX1                  0.046   regulatory factor X1 
C6orf174              0.046   hypothetical protein LOC387104 
ZIC2                  0.046   zinc finger protein of the cerebellum 2 
LRCH2                 0.046   leucine-rich repeats and calponin homology (CH) dom...
KRTAP5-11             0.046   keratin associated protein 5-11 
LOC100128979          0.042   PREDICTED: hypothetical protein 
LOC100128979          0.042   PREDICTED: hypothetical protein 
LOC100291356          0.042   PREDICTED: hypothetical protein XP_002347017 
LOC100128979          0.042   PREDICTED: hypothetical protein 
LOC100286907          0.042   PREDICTED: hypothetical protein XP_002342878 
EVX2                  0.042   even-skipped homeobox 2 
KRTAP5-7              0.042   keratin associated protein 5-7 
KRTAP5-2              0.042   keratin associated protein 5-2 
NCL                   0.042   nucleolin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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