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Search of human proteins with 239746486
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746486 PREDICTED: hypothetical protein XP_002343772 [Homo
sapiens]
(271 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746486 PREDICTED: hypothetical protein XP_002343772 [Homo ... 554 e-158
gi|239757486 PREDICTED: hypothetical protein [Homo sapiens] 547 e-156
gi|239752001 PREDICTED: hypothetical protein XP_002348063 [Homo ... 547 e-156
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 39 0.004
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 37 0.018
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 36 0.031
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 35 0.053
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 35 0.053
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 35 0.091
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof... 34 0.12
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 34 0.12
gi|4885323 G protein-coupled receptor 37 [Homo sapiens] 33 0.20
gi|171543895 ataxin 2 [Homo sapiens] 33 0.26
gi|5730073 KH domain containing, RNA binding, signal transductio... 33 0.34
gi|4506607 ribosomal protein L18 [Homo sapiens] 33 0.34
gi|222418604 hypothetical protein LOC257407 [Homo sapiens] 32 0.45
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 32 0.45
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 32 0.45
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 32 0.59
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 32 0.59
gi|5730027 KH domain containing, RNA binding, signal transductio... 32 0.59
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 32 0.59
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens] 32 0.77
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ... 32 0.77
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ... 32 0.77
gi|158303333 synaptopodin isoform B [Homo sapiens] 32 0.77
gi|40353727 synaptopodin isoform A [Homo sapiens] 32 0.77
gi|169167715 PREDICTED: hypothetical protein [Homo sapiens] 31 1.0
gi|239752933 PREDICTED: hypothetical protein [Homo sapiens] 31 1.0
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi... 31 1.0
>gi|239746486 PREDICTED: hypothetical protein XP_002343772 [Homo
sapiens]
Length = 271
Score = 554 bits (1427), Expect = e-158
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MVHLLPGRVEIPLMGLSAPISLLCQNQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQ 60
MVHLLPGRVEIPLMGLSAPISLLCQNQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQ
Sbjct: 1 MVHLLPGRVEIPLMGLSAPISLLCQNQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQ 60
Query: 61 VALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGRLSTAAAKGATHPP 120
VALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGRLSTAAAKGATHPP
Sbjct: 61 VALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGRLSTAAAKGATHPP 120
Query: 121 VSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGV 180
VSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGV
Sbjct: 121 VSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGV 180
Query: 181 EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE 240
EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE
Sbjct: 181 EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE 240
Query: 241 LRPRAVGTDASSPAASPGGAEAQRQTLEDLG 271
LRPRAVGTDASSPAASPGGAEAQRQTLEDLG
Sbjct: 241 LRPRAVGTDASSPAASPGGAEAQRQTLEDLG 271
>gi|239757486 PREDICTED: hypothetical protein [Homo sapiens]
Length = 271
Score = 547 bits (1410), Expect = e-156
Identities = 269/271 (99%), Positives = 269/271 (99%)
Query: 1 MVHLLPGRVEIPLMGLSAPISLLCQNQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQ 60
MVHLLPGRVEIPLMGLSAPISLLCQNQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQ
Sbjct: 1 MVHLLPGRVEIPLMGLSAPISLLCQNQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQ 60
Query: 61 VALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGRLSTAAAKGATHPP 120
VALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARG LSTAAAKGATH P
Sbjct: 61 VALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGPLSTAAAKGATHLP 120
Query: 121 VSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGV 180
VSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGV
Sbjct: 121 VSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGV 180
Query: 181 EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE 240
EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE
Sbjct: 181 EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE 240
Query: 241 LRPRAVGTDASSPAASPGGAEAQRQTLEDLG 271
LRPRAVGTDASSPAASPGGAEAQRQTLEDLG
Sbjct: 241 LRPRAVGTDASSPAASPGGAEAQRQTLEDLG 271
>gi|239752001 PREDICTED: hypothetical protein XP_002348063 [Homo
sapiens]
Length = 271
Score = 547 bits (1410), Expect = e-156
Identities = 269/271 (99%), Positives = 269/271 (99%)
Query: 1 MVHLLPGRVEIPLMGLSAPISLLCQNQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQ 60
MVHLLPGRVEIPLMGLSAPISLLCQNQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQ
Sbjct: 1 MVHLLPGRVEIPLMGLSAPISLLCQNQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQ 60
Query: 61 VALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGRLSTAAAKGATHPP 120
VALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARG LSTAAAKGATH P
Sbjct: 61 VALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGPLSTAAAKGATHLP 120
Query: 121 VSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGV 180
VSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGV
Sbjct: 121 VSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGV 180
Query: 181 EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE 240
EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE
Sbjct: 181 EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE 240
Query: 241 LRPRAVGTDASSPAASPGGAEAQRQTLEDLG 271
LRPRAVGTDASSPAASPGGAEAQRQTLEDLG
Sbjct: 241 LRPRAVGTDASSPAASPGGAEAQRQTLEDLG 271
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 39.3 bits (90), Expect = 0.004
Identities = 50/198 (25%), Positives = 76/198 (38%), Gaps = 15/198 (7%)
Query: 54 PPGGNSQVALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGRLSTAAA 113
P G +S + +SR P ++ PPRR ++R+ T + RLS +
Sbjct: 1649 PEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSR 1708
Query: 114 KGATHPPV---SFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAP 170
++ P + PR R S S + E + S ++ + S G S +
Sbjct: 1709 SASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPR 1768
Query: 171 CCGL------TRRPGVEWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLR---P 221
GL +RR RR DR G +Q R R+ R R R G G P
Sbjct: 1769 --GLQRSRSRSRREKTRTTRRRDRS-GSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSP 1825
Query: 222 HDKEATLVSRRRKYRRER 239
+E++ S RR+ R R
Sbjct: 1826 ARQESSRTSSRRRRGRSR 1843
>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
Length = 2608
Score = 37.0 bits (84), Expect = 0.018
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 32 ELSRHHLVKPVLERTRRVLAQKPPGGNSQVALEASNARSRGRAAKVAEPCFPPSRGT--K 89
++ R + V R Q+PPG AL A+ + + + AEP PSR
Sbjct: 1693 KIKRRSVKAKVGTTLERAPGQRPPG-----ALGKKKAKGKAKGSLRAEPGATPSRDALFN 1747
Query: 90 PPRRVAARTGGLTTARGRLSTAAAKGATHPPV 121
P R A R G A RL A KG PV
Sbjct: 1748 PSRAFACREEGSQLASERLKRATRKGTVLQPV 1779
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 36.2 bits (82), Expect = 0.031
Identities = 56/223 (25%), Positives = 78/223 (34%), Gaps = 16/223 (7%)
Query: 47 RRVLAQKPPGGNSQVALEASNARSRGRAA-----KVAEPCFPPSRGTKPPRRVAARTGGL 101
+++ QK G + L G+ A K A +RG + AA T L
Sbjct: 57 KKLRRQKAAAGGKKARLRGQKGAVAGKEARQHWQKAAGAGGAENRGGGEQKAAAAGTKSL 116
Query: 102 TTARGRLSTAAAKGATHPPVSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPD 161
RGR + A PR R A +G ++ +G G AA A V
Sbjct: 117 G-GRGRKPRRRGQKAAATGSKKPRWRAQKSAAAGSKN----RGAGAQKAAA--AAGVKSQ 169
Query: 162 GESGADHAPCCGLTRRPGVEWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRP 221
G A G R G + RRR + RG R RE + R R + RP
Sbjct: 170 GGEKPQKAAAAGAKSRSGKKPRRRGAKSRGDEDKKGRQREAKSRFGK-TRGGRRKKHRRP 228
Query: 222 HDKEATLVSRR---RKYRRERELRPRAVGTDASSPAASPGGAE 261
SRR +K +++R +A S S GG +
Sbjct: 229 KPAAGGAKSRRGGGKKPQKQRRRGQKAATGGKSRVGKSRGGGD 271
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 35.4 bits (80), Expect = 0.053
Identities = 59/216 (27%), Positives = 74/216 (34%), Gaps = 33/216 (15%)
Query: 74 AAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGR-------LSTAAAKGATHPPVSFPRT 126
A + P + G PRR A R G A GR LS K + P + PR
Sbjct: 212 APRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRL 271
Query: 127 RESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTR----RPGVEW 182
A + L + G + G + + G G A GL R +P W
Sbjct: 272 LSMPSAAARPCGAALPRS-GFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTW 330
Query: 183 RRRPDRQRGKNQDVCRFR-EMGCGGVRWRRTARDGEGLRPHDKEATLV----SRRRKYRR 237
R R RF + GC +R RDG G H E V RR++ RR
Sbjct: 331 ALAA-RPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAG--NHASEPARVWSPPPRRQRPRR 387
Query: 238 ------ERE-------LRPRAVGTDASSPAASPGGA 260
+ E RP G PAA PGGA
Sbjct: 388 LPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGA 423
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 35.4 bits (80), Expect = 0.053
Identities = 59/216 (27%), Positives = 74/216 (34%), Gaps = 33/216 (15%)
Query: 74 AAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGR-------LSTAAAKGATHPPVSFPRT 126
A + P + G PRR A R G A GR LS K + P + PR
Sbjct: 212 APRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRL 271
Query: 127 RESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTR----RPGVEW 182
A + L + G + G + + G G A GL R +P W
Sbjct: 272 LSMPSAAARPCGAALPRS-GFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTW 330
Query: 183 RRRPDRQRGKNQDVCRFR-EMGCGGVRWRRTARDGEGLRPHDKEATLV----SRRRKYRR 237
R R RF + GC +R RDG G H E V RR++ RR
Sbjct: 331 ALAA-RPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAG--NHASEPARVWSPPPRRQRPRR 387
Query: 238 ------ERE-------LRPRAVGTDASSPAASPGGA 260
+ E RP G PAA PGGA
Sbjct: 388 LPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGA 423
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 34.7 bits (78), Expect = 0.091
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 40 KPVLERTRRVLAQKPP--GGNSQVALEASNARSRGRAAKVAEPCFPPSRG--TKPPRRVA 95
+PV TR Q+PP G SQ + +A A A P PP G + P
Sbjct: 1107 RPVAPPTRPAPPQRPPPPSGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGVISAPQSHAR 1166
Query: 96 ARTGGLTTARGRLSTAAAKGATHPP 120
A G LT ++ +KG+T P
Sbjct: 1167 ASAGRLTPESQSKTSETSKGSTFLP 1191
>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
a [Homo sapiens]
Length = 578
Score = 34.3 bits (77), Expect = 0.12
Identities = 36/133 (27%), Positives = 46/133 (34%), Gaps = 11/133 (8%)
Query: 56 GGNSQVALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGRLSTAAAKG 115
GG S + + + V++P P + PP +V A G A S A +
Sbjct: 64 GGGSPSSSTGAEREDDDESLSVSKPLVPNAALLGPPAQVGAPAGPAPVAFSS-SAATSSS 122
Query: 116 ATHPPVSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCC--- 172
+ P S T +G G G G S G SGA PCC
Sbjct: 123 TSTPTSSCSMTAADFG---GGAAAGAVGGPGSRSAGGAGGTGTG----SGASCCPCCCCC 175
Query: 173 GLTRRPGVEWRRR 185
G RPG RRR
Sbjct: 176 GCPDRPGRRGRRR 188
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 34.3 bits (77), Expect = 0.12
Identities = 57/242 (23%), Positives = 84/242 (34%), Gaps = 42/242 (17%)
Query: 36 HHLVKPVLERTRRVLAQKPPGGNSQVALEA-SNARSRGRAAKVAEPCFPPSRGTKPPRRV 94
HH P R ++P G ++ + S + S GR G+ P
Sbjct: 2215 HHHHHPPPPDKDRYAQERPDHGRARARDQRWSRSPSEGREHMAHRQGSSSVSGSPAP--- 2271
Query: 95 AARTGGLTTARGRLSTAAAKGATHPPVSF-PRTRESWGAHSGKEDETLHQGQGLTSLA-- 151
+ +G T RGR P VS+ P R++ G+ ++ + Q Q ++A
Sbjct: 2272 -STSGTSTPRRGRRQLPQTPSTPRPHVSYSPVIRKAGGSGPPQQQQQQQQQQQQQAVARP 2330
Query: 152 ---------AFPGASVSPDGESGADHAPCCGLT--RRPGVEWRRRPDRQRGKNQDVCRFR 200
+PG + P D P G + R P +E RR P R ++ CR
Sbjct: 2331 GRAATSGPRRYPGPTAEP---LAGDRPPTGGHSSGRSPRME-RRVPGPARSESPRACRH- 2385
Query: 201 EMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERELRPRAVGTDASSPAASPGGA 260
GG RW + PH E R Y R + D + S GG
Sbjct: 2386 ----GGARWPASG-------PHVSEGPPGPRHHGYYRGSDY-------DEADGPGSGGGE 2427
Query: 261 EA 262
EA
Sbjct: 2428 EA 2429
>gi|4885323 G protein-coupled receptor 37 [Homo sapiens]
Length = 613
Score = 33.5 bits (75), Expect = 0.20
Identities = 40/151 (26%), Positives = 59/151 (39%), Gaps = 28/151 (18%)
Query: 55 PGGNSQVALEASNARSRGRAAKVAEPCF--PPSRGTKPPRRVAARTGGLTTARGRLSTAA 112
PG +++ L A R AA +A P + P + G P A GR + A+
Sbjct: 59 PGNSARDVLRARAPREEQGAAFLAGPSWDLPAAPGRDP-------------AAGRGAEAS 105
Query: 113 AKGATHPPVSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCC 172
A G PP P GA + ETL +G T+L F +S + E G A
Sbjct: 106 AAGPPGPPTRPPGPWRWKGARGQEPSETLGRGNP-TALQLF--LQISEEEEKGPRGAGIS 162
Query: 173 GLTRRPGVE----------WRRRPDRQRGKN 193
G ++ V+ W RR + +G +
Sbjct: 163 GRSQEQSVKTVPGASDLFYWPRRAGKLQGSH 193
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 33.1 bits (74), Expect = 0.26
Identities = 38/145 (26%), Positives = 54/145 (37%), Gaps = 17/145 (11%)
Query: 34 SRH-HLVKPVLERTRRVLAQKPPGGNSQVALEASNARSRGRA----AKVAEPCFPPSRGT 88
S+H H+ PV++ R++A P ++Q L +S+A G A A P P ++ T
Sbjct: 1060 SQHPHVYSPVIQGNARMMA---PPTHAQPGLVSSSATQYGAHEQTHAMYACPKLPYNKET 1116
Query: 89 KPPRRVAARTGGLTTARGRLSTAAAKGATHPPVSFPRTRESWGAHSGKEDETL----HQG 144
P A TG L + HP S T + H G HQ
Sbjct: 1117 SPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQH 1176
Query: 145 QGLTSLAAFPGASVSPDGESGADHA 169
Q +L SP +S HA
Sbjct: 1177 QAAQALHL-----ASPQQQSAIYHA 1196
>gi|5730073 KH domain containing, RNA binding, signal transduction
associated 3 [Homo sapiens]
Length = 346
Score = 32.7 bits (73), Expect = 0.34
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
Query: 68 ARSRGRAAKVAEPC-FPPSRGTKPPRRVAARTGGLTTARGRLSTAAAKGATHPPVSF--- 123
A +RGR A P RGT PR V + G ++ RG L T A+G PP +
Sbjct: 201 AITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG-LLTPRARGV--PPTGYRPP 257
Query: 124 --PRTRESWGAHSGKED-ETLHQGQGLTSLAAFPGASVSPDGESGADH 168
P T+E++G + + T + Q S S S +SGAD+
Sbjct: 258 PPPPTQETYGEYDYDDGYGTAYDEQSYDSY----DNSYSTPAQSGADY 301
>gi|4506607 ribosomal protein L18 [Homo sapiens]
Length = 188
Score = 32.7 bits (73), Expect = 0.34
Identities = 30/117 (25%), Positives = 42/117 (35%)
Query: 26 NQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQVALEASNARSRGRAAKVAEPCFPPS 85
NQ L L +P L +R + K PG ++ A+ R +V +
Sbjct: 44 NQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCAL 103
Query: 86 RGTKPPRRVAARTGGLTTARGRLSTAAAKGATHPPVSFPRTRESWGAHSGKEDETLH 142
R T R R GG +L+ + KG +S PR H GK T H
Sbjct: 104 RVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPH 160
>gi|222418604 hypothetical protein LOC257407 [Homo sapiens]
Length = 295
Score = 32.3 bits (72), Expect = 0.45
Identities = 23/64 (35%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 56 GGNSQVALEAS---NARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGRLSTAA 112
GG QV L +SR A FPP G P AA G ARG A
Sbjct: 28 GGRGQVLLVGELWEREQSRALLRDFARAVFPPEPGAAKPGGAAAEGAGPGAARGAQRAAR 87
Query: 113 AKGA 116
A GA
Sbjct: 88 AAGA 91
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 32.3 bits (72), Expect = 0.45
Identities = 56/226 (24%), Positives = 72/226 (31%), Gaps = 52/226 (23%)
Query: 51 AQKPPGGNSQVALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTG-----GLTTAR 105
A PPG + ++ RG V P P G+ P + G G
Sbjct: 1042 ADGPPGRDGAAGVKGD----RGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM 1097
Query: 106 GRLSTAAAKGATHPPVSFPRTRESWGAHSGKEDETLHQG-QGLTSLAAFPGAS------- 157
G A A+G P PR + G+ H+G GL L PG S
Sbjct: 1098 GPSGPAGARGIQGP--QGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASG 1155
Query: 158 -------------VSPDGESGADHAPC-------------CGLTRRPGVEWRRRPDRQRG 191
V P G+ GA+ P G PG P G
Sbjct: 1156 PAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPG 1215
Query: 192 KNQDVCRF-----REMGCGGVRWRRTARDGEGLRPHDKE--ATLVS 230
D+ F RE G +++ R + GLR HD E ATL S
Sbjct: 1216 PGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKS 1261
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 32.3 bits (72), Expect = 0.45
Identities = 56/226 (24%), Positives = 72/226 (31%), Gaps = 52/226 (23%)
Query: 51 AQKPPGGNSQVALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTG-----GLTTAR 105
A PPG + ++ RG V P P G+ P + G G
Sbjct: 973 ADGPPGRDGAAGVKGD----RGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM 1028
Query: 106 GRLSTAAAKGATHPPVSFPRTRESWGAHSGKEDETLHQG-QGLTSLAAFPGAS------- 157
G A A+G P PR + G+ H+G GL L PG S
Sbjct: 1029 GPSGPAGARGIQGP--QGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASG 1086
Query: 158 -------------VSPDGESGADHAPC-------------CGLTRRPGVEWRRRPDRQRG 191
V P G+ GA+ P G PG P G
Sbjct: 1087 PAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPG 1146
Query: 192 KNQDVCRF-----REMGCGGVRWRRTARDGEGLRPHDKE--ATLVS 230
D+ F RE G +++ R + GLR HD E ATL S
Sbjct: 1147 PGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKS 1192
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 32.0 bits (71), Expect = 0.59
Identities = 38/146 (26%), Positives = 54/146 (36%), Gaps = 10/146 (6%)
Query: 38 LVKPVL---ERTRRVLAQKPPGGNSQVALEASNARSRGRAAKVAEPCFPPSRGTKPPRRV 94
L++PVL E R ++P L ARS EP PS+G++P V
Sbjct: 1923 LMEPVLLPKEAPRVARPERPRADTGHAFLAKPPARSG------LEPASSPSKGSEPRPLV 1976
Query: 95 AARTGGLTTARGRLSTAAAKGATHPPVSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFP 154
+G T AR A A+ P + P + + Q L SL +
Sbjct: 1977 PPVSGHATIARTPAKNLAPHHASPDPPAPPASASDPHREKTQSKPFSIQELELRSL-GYH 2035
Query: 155 GASVSPDGESGADHAPCCGLTRRPGV 180
G+S SP+G LT G+
Sbjct: 2036 GSSYSPEGVEPVSPVSSPSLTHDKGL 2061
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 32.0 bits (71), Expect = 0.59
Identities = 38/146 (26%), Positives = 54/146 (36%), Gaps = 10/146 (6%)
Query: 38 LVKPVL---ERTRRVLAQKPPGGNSQVALEASNARSRGRAAKVAEPCFPPSRGTKPPRRV 94
L++PVL E R ++P L ARS EP PS+G++P V
Sbjct: 1939 LMEPVLLPKEAPRVARPERPRADTGHAFLAKPPARSG------LEPASSPSKGSEPRPLV 1992
Query: 95 AARTGGLTTARGRLSTAAAKGATHPPVSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFP 154
+G T AR A A+ P + P + + Q L SL +
Sbjct: 1993 PPVSGHATIARTPAKNLAPHHASPDPPAPPASASDPHREKTQSKPFSIQELELRSL-GYH 2051
Query: 155 GASVSPDGESGADHAPCCGLTRRPGV 180
G+S SP+G LT G+
Sbjct: 2052 GSSYSPEGVEPVSPVSSPSLTHDKGL 2077
>gi|5730027 KH domain containing, RNA binding, signal transduction
associated 1 [Homo sapiens]
Length = 443
Score = 32.0 bits (71), Expect = 0.59
Identities = 26/82 (31%), Positives = 28/82 (34%), Gaps = 21/82 (25%)
Query: 71 RGRAAKVAEPCFPPSRGTKPPRRVAAR--------TGGLTTARG-------------RLS 109
RGR A P P RG PPR R T G T RG R
Sbjct: 289 RGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRAR 348
Query: 110 TAAAKGATHPPVSFPRTRESWG 131
TA + PP P T E +G
Sbjct: 349 TAGIQRIPLPPPPAPETYEEYG 370
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 32.0 bits (71), Expect = 0.59
Identities = 35/112 (31%), Positives = 45/112 (40%), Gaps = 11/112 (9%)
Query: 35 RHHLVKPVLERTRRVLAQKPPGGNSQVALEASNARSRGRAAKVAEPCFPPSRGTKPPRRV 94
R H + + E RR Q+PP G S L +SRG A P PP P RR
Sbjct: 635 RLHGSRAIHEERRR---QQPPLGPSSSLLSLPGLKSRGSRAAGGAPSPPP-----PVRRA 686
Query: 95 AA--RTGGLTTARG-RLSTAAAKGATHPPVSFPRTRESWGAHSGKEDETLHQ 143
+A G + TA G S + G + P S TR+ +E E Q
Sbjct: 687 SAGPAPGPVVTAEGLHPSLPSPTGNSTPLGSSKETRKQEKERQKQEKERQKQ 738
>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 465
Score = 31.6 bits (70), Expect = 0.77
Identities = 53/222 (23%), Positives = 78/222 (35%), Gaps = 51/222 (22%)
Query: 47 RRVLAQKPPGGNSQVALEASNARSRGRAAKVAEPCF--PPSRGT--KPPRRVAARTGGLT 102
R L ++PP S + S+ + C P +RG K PRR A G
Sbjct: 104 RGCLGKEPPSQESWTRSDPRRCLSQDAVRSGSRVCRSRPQTRGGGGKQPRRQKAAVAGAK 163
Query: 103 TARGRLSTAAAKGATHPPVSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDG 162
+ G P+ R A +G + +G G+ SL G G
Sbjct: 164 SRGGEGKK-------------PQRRGQKAATAGAKS----RGGGVRSL----GGKKMRRG 202
Query: 163 ESGADHAPCCGLTRRPGVEWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPH 222
+ GA A CG ++P R+RG+ + GGVR +
Sbjct: 203 QKGAAGAKRCGGGKQP---------RRRGQ-------KASKSGGVRCQTP---------- 236
Query: 223 DKEATLVSRRRKYRRERELRPRAVGTDASSPAASPGGAEAQR 264
K A + RK R+R + A G +A++ GG E R
Sbjct: 237 QKAAAQGVKSRKKLRQRGQKAAAAGQEAAAGKTCGGGGEKHR 278
>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
sapiens]
Length = 459
Score = 31.6 bits (70), Expect = 0.77
Identities = 31/108 (28%), Positives = 38/108 (35%), Gaps = 10/108 (9%)
Query: 83 PPSRGTKPPRRVAARTGGLTTARGRLSTAAAKGATHPPVSFPRTRESWGAHSGKEDETLH 142
P RG RRV A A GR + A G+T PR R S S + + H
Sbjct: 142 PAGRGGGRTRRVVAAPESAAAAPGRSPSPADPGSTSSATRVPRARRS----SRRALQPRH 197
Query: 143 QGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGVEWRRRPDRQR 190
PGA ++ AP +RRPG RQR
Sbjct: 198 AAPDA------PGAPSRSTSQATPPPAPRFPASRRPGAPRLLSRTRQR 239
>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
sapiens]
Length = 459
Score = 31.6 bits (70), Expect = 0.77
Identities = 31/108 (28%), Positives = 38/108 (35%), Gaps = 10/108 (9%)
Query: 83 PPSRGTKPPRRVAARTGGLTTARGRLSTAAAKGATHPPVSFPRTRESWGAHSGKEDETLH 142
P RG RRV A A GR + A G+T PR R S S + + H
Sbjct: 142 PAGRGGGRTRRVVAAPESAAAAPGRSPSPADPGSTSSATRVPRARRS----SRRALQPRH 197
Query: 143 QGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGVEWRRRPDRQR 190
PGA ++ AP +RRPG RQR
Sbjct: 198 AAPDA------PGAPSRSTSQATPPPAPRFPASRRPGAPRLLSRTRQR 239
>gi|158303333 synaptopodin isoform B [Homo sapiens]
Length = 685
Score = 31.6 bits (70), Expect = 0.77
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 38 LVKP--VLERTRRVLAQKPPGGNSQVALEASNARSR-GRAAKVAEPCFPPSRGTKPPRRV 94
L KP V+ RT R + PGG SQ+ R G A +P P R +P R +
Sbjct: 229 LAKPPSVVNRTARPFGIQAPGGTSQMERSPMLERRHFGEKAPAPQPPSLPDRSPRPQRHI 288
Query: 95 AART 98
+R+
Sbjct: 289 MSRS 292
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 31.6 bits (70), Expect = 0.77
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 38 LVKP--VLERTRRVLAQKPPGGNSQVALEASNARSR-GRAAKVAEPCFPPSRGTKPPRRV 94
L KP V+ RT R + PGG SQ+ R G A +P P R +P R +
Sbjct: 229 LAKPPSVVNRTARPFGIQAPGGTSQMERSPMLERRHFGEKAPAPQPPSLPDRSPRPQRHI 288
Query: 95 AART 98
+R+
Sbjct: 289 MSRS 292
>gi|169167715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 31.2 bits (69), Expect = 1.0
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 187 DRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERELRPRAV 246
DRQR ++++ R+R+ RW R+ E R ++E R+R+ RER+ R R +
Sbjct: 89 DRQRKRDRERQRWRDRDRKRERWGDRDRETETERQEERERQR-DRKREKDRERQ-RQREI 146
Query: 247 GTDASSPAASPGGAEAQRQ 265
G D + + +R+
Sbjct: 147 GIDKDREIETEKDRDRERE 165
Score = 29.6 bits (65), Expect = 2.9
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 181 EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE 240
E R+ DR+R K+++ R RE+G R T +D + R + R R+ +++RE
Sbjct: 125 ERERQRDRKREKDRERQRQREIGIDKDREIETEKDRDREREMGETERYRDRERERQKQRE 184
Query: 241 LR 242
R
Sbjct: 185 TR 186
Score = 28.1 bits (61), Expect = 8.5
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 173 GLTRRPGVEWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRR 232
G+ + +E + DR+R + R+R+ + R T RD + R +KE R
Sbjct: 147 GIDKDREIETEKDRDREREMGETE-RYRDRERERQKQRETRRDRDRERQREKEDRERDRD 205
Query: 233 RKYRRERE-LRPRAVGTD 249
R+ RE++ R R G D
Sbjct: 206 RQKEREKDRYRERETGRD 223
>gi|239752933 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 31.2 bits (69), Expect = 1.0
Identities = 30/117 (25%), Positives = 39/117 (33%), Gaps = 15/117 (12%)
Query: 66 SNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGRLSTAAAKGATH------- 118
S R AA SR + P+ + GGLTTA L + + T
Sbjct: 18 SRQGKRMSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRH 77
Query: 119 --PPVSFPRTRESWGAHS------GKEDETLHQGQGLTSLAAFPGASVSPDGESGAD 167
P S R SWG S G + G L S + + VS G+D
Sbjct: 78 SPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSD 134
>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
sapiens]
Length = 1031
Score = 31.2 bits (69), Expect = 1.0
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 175 TRRPGVEWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRK 234
+R P + +R D +R +++D R RE + R +RD + LR SR R+
Sbjct: 24 SRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSRSRDRKRLRRSRSRERDRSRERR 83
Query: 235 YRRERE-LRPRAVGTDASSPAASPG 258
R R+ R R+ S ++SPG
Sbjct: 84 RSRSRDRRRSRSRSRGRRSRSSSPG 108
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,578,934
Number of Sequences: 37866
Number of extensions: 643125
Number of successful extensions: 2908
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 2779
Number of HSP's gapped (non-prelim): 249
length of query: 271
length of database: 18,247,518
effective HSP length: 101
effective length of query: 170
effective length of database: 14,423,052
effective search space: 2451918840
effective search space used: 2451918840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.