Guide to the Human Genome
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Name: LOC100293437 Sequence: fasta or formatted (203aa) NCBI GI: 239752933
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         17           2
 C cysteine            2.5          5           1
 D aspartate           2.5          5           1
 E glutamate           2.0          4           1
 F phenylalanine       3.0          6           1
 G glycine             9.9         20           2
 H histidine           3.4          7           1
 I isoleucine          1.5          3           1
 K lysine              3.9          8           1
 L leucine             5.9         12           1
 M methionine          2.0          4           1
 N asparagine          1.0          2           1
 P proline             8.4         17           2
 Q glutamine           4.9         10           1
 R arginine            9.4         19           2
 S serine             18.2         37           4
 T threonine           4.9         10           2
 V valine              4.9         10           1
 W tryptophan          2.5          5           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291237          0.883   PREDICTED: hypothetical protein XP_002347546 
LOC100289532          0.883   PREDICTED: hypothetical protein XP_002342183 
GREB1                 0.033   GREB1 protein isoform a 
MED1                  0.030   mediator complex subunit 1 
AKNA                  0.030   AT-hook transcription factor 
SFRS16                0.028   splicing factor, arginine/serine-rich 16 
CHD9                  0.023   chromodomain helicase DNA binding protein 9 
HIC1                  0.020   hypermethylated in cancer 1 isoform 2 
HIC1                  0.020   hypermethylated in cancer 1 isoform 1 
MUC6                  0.020   mucin 6, gastric 
SRRM2                 0.020   splicing coactivator subunit SRm300 
TNRC18                0.020   trinucleotide repeat containing 18 
PNN                   0.020   pinin, desmosome associated protein 
SRRM1                 0.020   serine/arginine repetitive matrix 1 
BAT2                  0.018   HLA-B associated transcript-2 
LOC100293501          0.018   PREDICTED: hypothetical protein 
LOC100291178          0.018   PREDICTED: hypothetical protein XP_002347544 
LOC100289466          0.018   PREDICTED: hypothetical protein XP_002342181 
MACF1                 0.018   microfilament and actin filament cross-linker protei...
MACF1                 0.018   microfilament and actin filament cross-linker protei...
CHD7                  0.018   chromodomain helicase DNA binding protein 7 
MLLT3                 0.018   myeloid/lymphoid or mixed-lineage leukemia (trithor...
CXorf39               0.018   hypothetical protein LOC139231 
MLLT6                 0.018   myeloid/lymphoid or mixed-lineage leukemia (trithora...
FLJ22184              0.015   PREDICTED: hypothetical protein FLJ22184 
LOC100291624          0.015   PREDICTED: hypothetical protein XP_002345876 
FLJ22184              0.015   PREDICTED: hypothetical protein FLJ22184 
LOC100289712          0.015   PREDICTED: hypothetical protein XP_002346761 
LOC100288900          0.015   PREDICTED: hypothetical protein XP_002343772 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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