Guide to the Human Genome
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Name: C2orf72 Sequence: fasta or formatted (295aa) NCBI GI: 222418604
Description:

hypothetical protein LOC257407

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            22.4         66           6
 C cysteine            2.7          8           1
 D aspartate           3.4         10           2
 E glutamate           7.8         23           3
 F phenylalanine       2.7          8           1
 G glycine            11.2         33           2
 H histidine           0.3          1           1
 I isoleucine          0.7          2           1
 K lysine              1.0          3           1
 L leucine            10.2         30           2
 M methionine          0.7          2           1
 N asparagine          0.7          2           1
 P proline             8.1         24           2
 Q glutamine           4.1         12           1
 R arginine           11.5         34           3
 S serine              3.7         11           2
 T threonine           1.0          3           1
 V valine              6.1         18           2
 W tryptophan          1.4          4           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC257407 
LOC100289316          0.030   PREDICTED: hypothetical protein 
LOC100289316          0.030   PREDICTED: hypothetical protein XP_002343619 
EN1                   0.029   engrailed homeobox 1 
LOC728767             0.027   PREDICTED: hypothetical protein 
LOC100289126          0.027   PREDICTED: hypothetical protein XP_002343381 
LOC728767             0.027   PREDICTED: hypothetical protein 
GRIN2D                0.027   N-methyl-D-aspartate receptor subunit 2D precursor ...
LOC100292048          0.027   PREDICTED: hypothetical protein XP_002344877 
PHOX2B                0.027   paired-like homeobox 2b 
RYR1                  0.027   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.027   skeletal muscle ryanodine receptor isoform 1 
LOC100130174          0.025   PREDICTED: hypothetical protein 
LOC100287063          0.025   PREDICTED: hypothetical protein 
LOC100130174          0.025   PREDICTED: hypothetical protein 
FOXD1                 0.025   forkhead box D1 
ADRA2C                0.025   alpha-2C-adrenergic receptor 
KRTAP4-6              0.023   PREDICTED: keratin associated protein 4.6 
ZSWIM5                0.023   zinc finger, SWIM domain containing 5 
EID2                  0.023   CREBBP/EP300 inhibitor 2 
DCHS1                 0.023   dachsous 1 precursor 
ZNRF2                 0.023   zinc finger/RING finger 2 
NHS                   0.021   Nance-Horan syndrome protein isoform 1 
GDF7                  0.021   growth differentiation factor 7 preproprotein 
HOXA13                0.021   homeobox A13 
LOC100287382          0.021   PREDICTED: hypothetical protein XP_002342942 
NKX6-1                0.021   NK6 transcription factor related, locus 1 
LOC100290023          0.020   PREDICTED: hypothetical protein XP_002348147 
LOC100287499          0.020   PREDICTED: hypothetical protein 
LOC100287499          0.020   PREDICTED: hypothetical protein XP_002343643 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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