Guide to the Human Genome
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Name: KHDRBS3 Sequence: fasta or formatted (346aa) NCBI GI: 5730073
Description:

KH domain containing, RNA binding, signal transduction associated 3

Referenced in:

Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         21           1
 C cysteine            0.0          0           0
 D aspartate           5.8         20           2
 E glutamate           8.4         29           3
 F phenylalanine       2.3          8           1
 G glycine             9.8         34           2
 H histidine           1.7          6           1
 I isoleucine          2.9         10           1
 K lysine              6.9         24           2
 L leucine             7.8         27           2
 M methionine          1.7          6           1
 N asparagine          3.2         11           1
 P proline             8.4         29           6
 Q glutamine           3.8         13           1
 R arginine            7.2         25           1
 S serine              5.2         18           1
 T threonine           5.8         20           1
 V valine              6.1         21           3
 W tryptophan          0.3          1           1
 Y tyrosine            6.6         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   KH domain containing, RNA binding, signal transductio... 
KHDRBS2               0.614   KH domain-containing, RNA-binding, signal transduct...
KHDRBS1               0.510   KH domain containing, RNA binding, signal transductio...
QKI                   0.163   quaking homolog, KH domain RNA binding isoform HQK-7...
QKI                   0.163   quaking homolog, KH domain RNA binding isoform HQK-7...
QKI                   0.163   quaking homolog, KH domain RNA binding isoform HQK-6...
QKI                   0.163   quaking homolog, KH domain RNA binding isoform HQK-5...
SF1                   0.083   splicing factor 1 isoform 3 
SF1                   0.083   splicing factor 1 isoform 2 
SF1                   0.083   splicing factor 1 isoform 1 
RBMX                  0.034   RNA binding motif protein, X-linked 
RBMXL1                0.032   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.032   RNA binding motif protein, X-linked-like 1 
HRNBP3                0.026   hexaribonucleotide binding protein 3 
IGF2BP1               0.023   insulin-like growth factor 2 mRNA binding protein 1...
IGF2BP3               0.020   insulin-like growth factor 2 mRNA binding protein 3 ...
HNRNPK                0.019   heterogeneous nuclear ribonucleoprotein K isoform a ...
HNRNPK                0.019   heterogeneous nuclear ribonucleoprotein K isoform b ...
HNRNPK                0.019   heterogeneous nuclear ribonucleoprotein K isoform a ...
A2BP1                 0.019   ataxin 2-binding protein 1 isoform 5 
IGF2BP1               0.019   insulin-like growth factor 2 mRNA binding protein 1 ...
SNRPB                 0.019   small nuclear ribonucleoprotein polypeptide B/B' iso...
SNRPB                 0.019   small nuclear ribonucleoprotein polypeptide B/B' isof...
HNRNPR                0.019   heterogeneous nuclear ribonucleoprotein R isoform 3...
HNRNPR                0.019   heterogeneous nuclear ribonucleoprotein R isoform 1...
HNRNPR                0.019   heterogeneous nuclear ribonucleoprotein R isoform 4...
HNRNPR                0.019   heterogeneous nuclear ribonucleoprotein R isoform 2 [...
RBMY1A1               0.017   RNA binding motif protein, Y-linked, family 1, member...
FAM181B               0.017   hypothetical protein LOC220382 
RBMY1E                0.017   RNA binding motif protein, Y-linked, family 1, membe...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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