Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239746427
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746427 PREDICTED: hypothetical protein XP_002344220 [Homo
sapiens]
(255 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746427 PREDICTED: hypothetical protein XP_002344220 [Homo ... 518 e-147
gi|239757427 PREDICTED: hypothetical protein XP_002345434 [Homo ... 334 5e-92
gi|239751944 PREDICTED: hypothetical protein [Homo sapiens] 334 5e-92
gi|21735415 centromere protein B [Homo sapiens] 34 0.14
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 32 0.41
gi|62988346 glutamate receptor, ionotropic, N-methyl-D-aspartate... 32 0.41
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 32 0.54
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 32 0.54
gi|112421108 capicua homolog [Homo sapiens] 32 0.54
gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens] 31 1.2
gi|169217959 PREDICTED: similar to hCG2042704, partial [Homo sap... 31 1.2
gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens] 31 1.2
gi|62177127 myosin heavy chain Myr 8 [Homo sapiens] 31 1.2
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens] 30 1.6
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ... 30 1.6
gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo ... 30 1.6
gi|70167113 adenosine deaminase, RNA-specific isoform d [Homo sa... 30 1.6
gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo sa... 30 1.6
gi|239750418 PREDICTED: hypothetical protein XP_002347389 [Homo ... 30 2.0
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 30 2.0
gi|239744720 PREDICTED: hypothetical protein XP_002343252 [Homo ... 30 2.0
gi|62953127 polyhomeotic 1-like [Homo sapiens] 30 2.7
gi|151301154 mucin 6, gastric [Homo sapiens] 30 2.7
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 30 2.7
gi|11415052 retinoid X receptor, beta [Homo sapiens] 29 3.5
gi|153281169 dual-specificity tyrosine-(Y)-phosphorylation regul... 29 3.5
gi|4503427 dual-specificity tyrosine-(Y)-phosphorylation regulat... 29 3.5
gi|109150416 peroxidasin [Homo sapiens] 29 3.5
gi|9789865 eukaryotic translation initiation factor 4E nuclear i... 29 3.5
gi|153792764 hypothetical protein LOC57624 [Homo sapiens] 29 4.6
>gi|239746427 PREDICTED: hypothetical protein XP_002344220 [Homo
sapiens]
Length = 255
Score = 518 bits (1333), Expect = e-147
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MRGPVIDIMLILDNWKGQESRFVVVLHDITASAVNAEFQPHAGQQWNQPKDRASRSVCPL 60
MRGPVIDIMLILDNWKGQESRFVVVLHDITASAVNAEFQPHAGQQWNQPKDRASRSVCPL
Sbjct: 1 MRGPVIDIMLILDNWKGQESRFVVVLHDITASAVNAEFQPHAGQQWNQPKDRASRSVCPL 60
Query: 61 SEQTDGLRLDPGTEALERIKLEDGDKEVQGGVPEHCPITPLTSGSLRLTGTLLSKSGPAN 120
SEQTDGLRLDPGTEALERIKLEDGDKEVQGGVPEHCPITPLTSGSLRLTGTLLSKSGPAN
Sbjct: 61 SEQTDGLRLDPGTEALERIKLEDGDKEVQGGVPEHCPITPLTSGSLRLTGTLLSKSGPAN 120
Query: 121 CKSLHIASARVAVPRIPSAPQAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLL 180
CKSLHIASARVAVPRIPSAPQAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLL
Sbjct: 121 CKSLHIASARVAVPRIPSAPQAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLL 180
Query: 181 QRLPLLLLPLLLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHLPL 240
QRLPLLLLPLLLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHLPL
Sbjct: 181 QRLPLLLLPLLLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHLPL 240
Query: 241 HLGHELHPGARTVWR 255
HLGHELHPGARTVWR
Sbjct: 241 HLGHELHPGARTVWR 255
>gi|239757427 PREDICTED: hypothetical protein XP_002345434 [Homo
sapiens]
Length = 184
Score = 334 bits (856), Expect = 5e-92
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 92 VPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASPAGVPPS 151
VPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASPAGVPPS
Sbjct: 21 VPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASPAGVPPS 80
Query: 152 GDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVP 211
GDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVP
Sbjct: 81 GDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVP 140
Query: 212 GHQLAVLGGVLQGLALRQNPGSGLVHLPLHLGHELHPGARTVWR 255
GHQLAVLGGVLQGLALRQNPGSGLVHLPLHLGHELHPGARTVWR
Sbjct: 141 GHQLAVLGGVLQGLALRQNPGSGLVHLPLHLGHELHPGARTVWR 184
>gi|239751944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 184
Score = 334 bits (856), Expect = 5e-92
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 92 VPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASPAGVPPS 151
VPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASPAGVPPS
Sbjct: 21 VPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASPAGVPPS 80
Query: 152 GDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVP 211
GDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVP
Sbjct: 81 GDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVP 140
Query: 212 GHQLAVLGGVLQGLALRQNPGSGLVHLPLHLGHELHPGARTVWR 255
GHQLAVLGGVLQGLALRQNPGSGLVHLPLHLGHELHPGARTVWR
Sbjct: 141 GHQLAVLGGVLQGLALRQNPGSGLVHLPLHLGHELHPGARTVWR 184
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 33.9 bits (76), Expect = 0.14
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 115 KSGPANCKSLHIASARVAVPRIPSAPQAASPAGVPPSG 152
+ G +C + A AR A PR P+AP ASPA VP G
Sbjct: 129 RHGVVSCSGVARARARNAAPRTPAAP--ASPAAVPSEG 164
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 32.3 bits (72), Expect = 0.41
Identities = 51/198 (25%), Positives = 65/198 (32%), Gaps = 25/198 (12%)
Query: 27 HDITASAVNAEFQPHAGQQWNQPKDRA-SRSVCPLSEQTDGLRLDPGTEALERIKLEDGD 85
H T + A +P AG +P R+ S S PLS R P R
Sbjct: 215 HSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPA---RSGPSARGTPRAPAHPSQ 271
Query: 86 KEVQGGVPEHCP-ITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAP---- 140
+ +G P +TP + G L S P S A A P +P+ P
Sbjct: 272 PKPKGLQALRPPQVTPPRKDAAPALGPL--SSSPLATPSPSAALQSQAPPTLPATPHSSS 329
Query: 141 ---QAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAG---------LLQRLPLLLL 188
Q A+P + P A LQ P P G L PL
Sbjct: 330 LTCQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLS-- 387
Query: 189 PLLLPQPRYPVRLVQPPV 206
PL P P+ P L PP+
Sbjct: 388 PLATPPPQAPPALALPPL 405
>gi|62988346 glutamate receptor, ionotropic, N-methyl-D-aspartate 3B
[Homo sapiens]
Length = 1043
Score = 32.3 bits (72), Expect = 0.41
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 90 GGVPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASPAGVP 149
GG P+ C + GS+RL G LL ++ A ++ + PR+P P
Sbjct: 21 GGHPQPCGVLARLGGSVRL-GALLPRAPLARARARAALARAALAPRLPHNLSLELVVAAP 79
Query: 150 PSGDVAHL 157
P+ D A L
Sbjct: 80 PARDPASL 87
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 32.0 bits (71), Expect = 0.54
Identities = 36/151 (23%), Positives = 57/151 (37%), Gaps = 29/151 (19%)
Query: 94 EHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASP----AGVP 149
+H PI+P T +L+ ++L +G I + + P + + +SP A P
Sbjct: 1850 QHSPISPRTQDALQQRPSVLHNTGMKGI----ITAVEPSTPTVLRSTSTSSPVRPAATFP 1905
Query: 150 PSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRL 209
P+ H PL G++ P L+ P+LL P+ R+ +P R
Sbjct: 1906 PA--------THCPLGGTLDGVY-----------PTLMEPVLL--PKEAPRVARPERPRA 1944
Query: 210 VPGHQLAVLGGVLQGLALRQNPGSGLVHLPL 240
GH GL +P G PL
Sbjct: 1945 DTGHAFLAKPPARSGLEPASSPSKGSEPRPL 1975
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 32.0 bits (71), Expect = 0.54
Identities = 36/151 (23%), Positives = 57/151 (37%), Gaps = 29/151 (19%)
Query: 94 EHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASP----AGVP 149
+H PI+P T +L+ ++L +G I + + P + + +SP A P
Sbjct: 1866 QHSPISPRTQDALQQRPSVLHNTGMKGI----ITAVEPSTPTVLRSTSTSSPVRPAATFP 1921
Query: 150 PSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRL 209
P+ H PL G++ P L+ P+LL P+ R+ +P R
Sbjct: 1922 PA--------THCPLGGTLDGVY-----------PTLMEPVLL--PKEAPRVARPERPRA 1960
Query: 210 VPGHQLAVLGGVLQGLALRQNPGSGLVHLPL 240
GH GL +P G PL
Sbjct: 1961 DTGHAFLAKPPARSGLEPASSPSKGSEPRPL 1991
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 32.0 bits (71), Expect = 0.54
Identities = 37/130 (28%), Positives = 51/130 (39%), Gaps = 17/130 (13%)
Query: 91 GVPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVP---RIPSAP----QAA 143
G P P + S+R T L N K L + +P +PSAP Q+
Sbjct: 847 GTKAAAPSGPAPTTSIRFT---LPPGTSTNGKVLAATAPTPGIPILQSVPSAPPPKAQSV 903
Query: 144 SPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLLLPQPRYPVRLVQ 203
SP PP G A L + P + + G G Q LPL+ P +P Q
Sbjct: 904 SPVQAPPPGGSAQLLPGKVLVPLAAPSMSVRG-GGAGQPLPLVSPPFSVPVQNG----AQ 958
Query: 204 PP--VLRLVP 211
PP +++L P
Sbjct: 959 PPSKIIQLTP 968
>gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 511
Score = 30.8 bits (68), Expect = 1.2
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 191 LLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHL 238
L P P+ P+R +PP LRL P Q + G ++G A S + H+
Sbjct: 364 LSPHPQSPLRAPKPPDLRLAPLGQERLQGPWVRGSAGAVRETSAITHI 411
>gi|169217959 PREDICTED: similar to hCG2042704, partial [Homo
sapiens]
Length = 300
Score = 30.8 bits (68), Expect = 1.2
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 191 LLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHL 238
L P P+ P+R +PP LRL P Q + G ++G A S + H+
Sbjct: 153 LSPHPQSPLRAPKPPDLRLAPLGQERLQGPWVRGSAGAVRETSAITHI 200
>gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 618
Score = 30.8 bits (68), Expect = 1.2
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 191 LLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHL 238
L P P+ P+R +PP LRL P Q + G ++G A S + H+
Sbjct: 364 LSPHPQSPLRAPKPPDLRLAPLGQERLQGPWVRGSAGAVRETSAITHI 411
>gi|62177127 myosin heavy chain Myr 8 [Homo sapiens]
Length = 1858
Score = 30.8 bits (68), Expect = 1.2
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
Query: 49 PKDRASRSVCPLSEQTDGLRLDPGTEALERIKLEDGD----KEVQGGVPEHCPITPLTSG 104
P R S S +S R + EAL R + D K++ P+ P T L+
Sbjct: 1304 PNTRLSASYEAVSACLSAAR-EAANEALARPRPHSDDYSTMKKIPPRKPKRSPNTKLSGS 1362
Query: 105 SLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASPAGVPPSGD 153
++G+ + PA A+ARV P PQ A P PP +
Sbjct: 1363 YEEISGSRPGDARPAGAPG---AAARVLTP---GTPQCALPPAAPPGDE 1405
>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 743
Score = 30.4 bits (67), Expect = 1.6
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 177 AGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGL 225
AGL +P P+L P+ PV L++P GH VL GVL+G+
Sbjct: 659 AGLTPHVP----PVLGAAPQQPVALIRPD------GHAAPVLAGVLEGV 697
>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
sapiens]
Length = 697
Score = 30.4 bits (67), Expect = 1.6
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 177 AGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGL 225
AGL +P P+L P+ PV L++P GH VL GVL+G+
Sbjct: 613 AGLTPHVP----PVLGAAPQQPVALIRPD------GHAAPVLAGVLEGV 651
>gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo
sapiens]
Length = 697
Score = 30.4 bits (67), Expect = 1.6
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 177 AGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGL 225
AGL +P P+L P+ PV L++P GH VL GVL+G+
Sbjct: 613 AGLTPHVP----PVLGAAPQQPVALIRPD------GHAAPVLAGVLEGV 651
>gi|70167113 adenosine deaminase, RNA-specific isoform d [Homo
sapiens]
Length = 931
Score = 30.4 bits (67), Expect = 1.6
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 74 EALERIKLEDGDKEVQGGVPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASA 129
+A R+ + + +K + G E +TP+T SLR T LLS+S A K+L + +
Sbjct: 491 DAALRVLIGENEKAERMGFTE---VTPVTGASLRRTMLLLSRSPEAQPKTLPLTGS 543
>gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo
sapiens]
Length = 1226
Score = 30.4 bits (67), Expect = 1.6
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 74 EALERIKLEDGDKEVQGGVPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASA 129
+A R+ + + +K + G E +TP+T SLR T LLS+S A K+L + +
Sbjct: 786 DAALRVLIGENEKAERMGFTE---VTPVTGASLRRTMLLLSRSPEAQPKTLPLTGS 838
>gi|239750418 PREDICTED: hypothetical protein XP_002347389 [Homo
sapiens]
Length = 220
Score = 30.0 bits (66), Expect = 2.0
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 180 LQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGL-ALRQNPGSGLVHL 238
L LPLL+L ++ PR P +Q ++R A+LG + Q + L NPG G +HL
Sbjct: 129 LDPLPLLVLVQVVGAPRRPACGLQERIVR-----SPAILGLIQQNVQGLLINPGFGKLHL 183
Query: 239 PL 240
L
Sbjct: 184 LL 185
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 30.0 bits (66), Expect = 2.0
Identities = 50/186 (26%), Positives = 64/186 (34%), Gaps = 31/186 (16%)
Query: 27 HDITASAVNAEFQPHAGQQWNQPKDRA-SRSVCPLSEQTDGLRLDPGTEALERIKLEDGD 85
H T + A +P AG +P R+ S S PLS R P R
Sbjct: 206 HSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPA---RSGPSARGTPRAPAHPSQ 262
Query: 86 KEVQGGVPEHCP-ITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAA- 143
+ +G P +TP + G L S +A+ + P PSAP +
Sbjct: 263 PKPKGLQALRPPQVTPPRKDAAPALGPLSSSP---------LATPSPSAPPSPSAPPSLQ 313
Query: 144 ---SPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLLLPQPRYPVR 200
SP PPS L P L H F L PL PL P P+ P
Sbjct: 314 TLPSPPATPPSQATTSLGS---PTLQ---ATHSF-----LPSPPLS--PLATPPPQAPPA 360
Query: 201 LVQPPV 206
L PP+
Sbjct: 361 LALPPL 366
>gi|239744720 PREDICTED: hypothetical protein XP_002343252 [Homo
sapiens]
Length = 220
Score = 30.0 bits (66), Expect = 2.0
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 180 LQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGL-ALRQNPGSGLVHL 238
L LPLL+L ++ PR P +Q ++R A+LG + Q + L NPG G +HL
Sbjct: 129 LDPLPLLVLVQVVGAPRRPACGLQERIVR-----SPAILGLIQQNVQGLLINPGFGKLHL 183
Query: 239 PL 240
L
Sbjct: 184 LL 185
>gi|62953127 polyhomeotic 1-like [Homo sapiens]
Length = 1004
Score = 29.6 bits (65), Expect = 2.7
Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 24/113 (21%)
Query: 137 PSAPQAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLLLPQPR 196
P PQ VPPS Q L ++P +LQ PL L P P+P
Sbjct: 448 PQPPQVPPTQQVPPSQSQQQAQT-----LVVQP---------MLQSSPLSLPPDAAPKPP 493
Query: 197 YPVRLVQPPVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHLPLHLGHELHPG 249
P++ +PPV + P LG A + P H+P+ + PG
Sbjct: 494 IPIQ-SKPPVAPIKPPQ----LGAAKMSAAQQPPP-----HIPVQVVGTRQPG 536
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 29.6 bits (65), Expect = 2.7
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 97 PITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASPAGVPP 150
P TP T+ S G+ + +GP S H A P PS P+ P VPP
Sbjct: 1400 PQTPHTTHSPPTAGSPVPSTGPVTATSFH---ATTTYP-TPSHPETTLPTHVPP 1449
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 29.6 bits (65), Expect = 2.7
Identities = 34/101 (33%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 118 PANCKSLHIASARVAVPRIPSAPQA---ASPAGVPPSGDVAHLQLQHF----PLLALRPG 170
P +L I SA +P P P A +P VPPS H +Q+ P AL P
Sbjct: 891 PPGVAALSIHSAVAQLPGQPVYPAAFPQMAPTDVPPS---PHHTVQNMRATPPQPALPPQ 947
Query: 171 LHLFGLAGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVP 211
L L + L P+L PQP P + V PP L P
Sbjct: 948 PTLPPQPVLPPQPTLPPQPVLPPQPTRPPQPVLPPQPMLPP 988
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 29.3 bits (64), Expect = 3.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 66 GLRLDPGTEALERIKLEDGDKEVQGGVPEHCPITPLTSGSL 106
G++ + E +R K +DGD E GG PE P+ + L
Sbjct: 269 GMKREAVQEERQRGKDKDGDGEGAGGAPEEMPVDRILEAEL 309
>gi|153281169 dual-specificity tyrosine-(Y)-phosphorylation
regulated kinase 2 isoform 2 [Homo sapiens]
Length = 601
Score = 29.3 bits (64), Expect = 3.5
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 18/85 (21%)
Query: 43 GQQWNQPKDRASRSVCPLSEQTDGLRLDPGTEALERI------------KLEDGDKEVQG 90
G ++ P D S C L+E G L PG + +++ KL D K +
Sbjct: 396 GARYGMPIDMWSLG-CILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLDASKRAKN 454
Query: 91 -----GVPEHCPITPLTSGSLRLTG 110
G P +C +T L+ GS+ L G
Sbjct: 455 FVSSKGYPRYCTVTTLSDGSVVLNG 479
>gi|4503427 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 2 isoform 1 [Homo sapiens]
Length = 528
Score = 29.3 bits (64), Expect = 3.5
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 18/85 (21%)
Query: 43 GQQWNQPKDRASRSVCPLSEQTDGLRLDPGTEALERI------------KLEDGDKEVQG 90
G ++ P D S C L+E G L PG + +++ KL D K +
Sbjct: 323 GARYGMPIDMWSLG-CILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLDASKRAKN 381
Query: 91 -----GVPEHCPITPLTSGSLRLTG 110
G P +C +T L+ GS+ L G
Sbjct: 382 FVSSKGYPRYCTVTTLSDGSVVLNG 406
>gi|109150416 peroxidasin [Homo sapiens]
Length = 1479
Score = 29.3 bits (64), Expect = 3.5
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 101 LTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASPAGVPPS 151
L+SG+LR++G L G C++++I ++ V + P+ PS
Sbjct: 482 LSSGTLRISGVALHDQGQYECQAVNIIGSQKVVAHLTVQPRVTPVFASIPS 532
>gi|9789865 eukaryotic translation initiation factor 4E nuclear
import factor 1 [Homo sapiens]
Length = 985
Score = 29.3 bits (64), Expect = 3.5
Identities = 36/116 (31%), Positives = 44/116 (37%), Gaps = 24/116 (20%)
Query: 125 HIASARVAVPRIPSAPQAASPAGVPPSGDVAHLQLQHFPLL----ALRPGLHLFGLAGLL 180
H+ R A P Q GV P QH P L L PG+ L L G+
Sbjct: 816 HVPMVRPAHQLHPGLVQRMLAQGVHP---------QHLPSLLQTGVLPPGMDLSHLQGIS 866
Query: 181 QRLPLLLLPLLLPQPRYPVRLVQPPVLRLVPGH--QLAVLGGVLQGLALRQNPGSG 234
+ L QP YP+ P+L PG LA++ LQ L PGSG
Sbjct: 867 GPI--------LGQPFYPLPAASHPLLNPRPGTPLHLAMVQQQLQRSVLHP-PGSG 913
>gi|153792764 hypothetical protein LOC57624 [Homo sapiens]
Length = 653
Score = 28.9 bits (63), Expect = 4.6
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 125 HIASARVAVPRIPSAPQAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLP 184
H S++ A P +P A + PP G + + LL+ RP L +F A P
Sbjct: 290 HSCSSQCATPTVPDLDFAKASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPA------P 343
Query: 185 LLLLPLLLPQPRYPVRLVQPPVLRLV 210
+ P P P+ + + PVL V
Sbjct: 344 VHCSPNSDESPLTPLEVTKLPVLENV 369
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.140 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,629,456
Number of Sequences: 37866
Number of extensions: 593795
Number of successful extensions: 2254
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 2215
Number of HSP's gapped (non-prelim): 76
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.