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Search of human proteins with 239745989
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo
sapiens]
(296 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo ... 615 e-176
gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo ... 596 e-171
gi|239756978 PREDICTED: hypothetical protein XP_002345135 [Homo ... 182 3e-46
gi|239756562 PREDICTED: hypothetical protein [Homo sapiens] 45 8e-05
gi|4503509 eukaryotic translation initiation factor 3, subunit 1... 44 1e-04
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 44 2e-04
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 44 2e-04
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 44 2e-04
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 43 3e-04
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 43 3e-04
gi|239755509 PREDICTED: hypothetical protein [Homo sapiens] 43 4e-04
gi|239750019 PREDICTED: hypothetical protein [Homo sapiens] 43 4e-04
gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo ... 43 4e-04
gi|239753353 PREDICTED: hypothetical protein [Homo sapiens] 42 5e-04
gi|239747921 PREDICTED: hypothetical protein XP_002346480 [Homo ... 42 5e-04
gi|239741815 PREDICTED: hypothetical protein XP_002342320 [Homo ... 42 5e-04
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 42 6e-04
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 42 6e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 41 0.001
gi|120587019 zinc finger protein 318 [Homo sapiens] 41 0.001
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 41 0.001
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 41 0.001
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 41 0.001
gi|156616290 collagen type VI alpha 6 [Homo sapiens] 40 0.002
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 40 0.002
gi|48762934 alpha 2 type I collagen [Homo sapiens] 40 0.003
gi|169172231 PREDICTED: hypothetical protein [Homo sapiens] 40 0.003
gi|169170975 PREDICTED: hypothetical protein [Homo sapiens] 40 0.003
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 40 0.003
>gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo
sapiens]
Length = 296
Score = 615 bits (1585), Expect = e-176
Identities = 296/296 (100%), Positives = 296/296 (100%)
Query: 1 MDSAAKGFTVPVVSEWEFEVKSSDSTQVFLIPDQPPIKHCFDGNRLRKDKIYVDINSKQN 60
MDSAAKGFTVPVVSEWEFEVKSSDSTQVFLIPDQPPIKHCFDGNRLRKDKIYVDINSKQN
Sbjct: 1 MDSAAKGFTVPVVSEWEFEVKSSDSTQVFLIPDQPPIKHCFDGNRLRKDKIYVDINSKQN 60
Query: 61 LMGFAIRQLSHPSTIQFIHRWMKLPNSPSRETTISTRWDEHVRGGELVVKWDADTYGSSW 120
LMGFAIRQLSHPSTIQFIHRWMKLPNSPSRETTISTRWDEHVRGGELVVKWDADTYGSSW
Sbjct: 61 LMGFAIRQLSHPSTIQFIHRWMKLPNSPSRETTISTRWDEHVRGGELVVKWDADTYGSSW 120
Query: 121 RNRRSATTPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQR 180
RNRRSATTPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQR
Sbjct: 121 RNRRSATTPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQR 180
Query: 181 ARGRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEG 240
ARGRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEG
Sbjct: 181 ARGRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEG 240
Query: 241 SGGLAEVRGGPGGLAEVRGGPGGLAEVIIVKPRAMRGLCSVGQEAKSGTGPTVGCY 296
SGGLAEVRGGPGGLAEVRGGPGGLAEVIIVKPRAMRGLCSVGQEAKSGTGPTVGCY
Sbjct: 241 SGGLAEVRGGPGGLAEVRGGPGGLAEVIIVKPRAMRGLCSVGQEAKSGTGPTVGCY 296
>gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo
sapiens]
Length = 333
Score = 596 bits (1537), Expect = e-171
Identities = 296/333 (88%), Positives = 296/333 (88%), Gaps = 37/333 (11%)
Query: 1 MDSAAKGFTVPVVSEWEFEVKSSDSTQVFLIPDQPPIKHCFDGNRLRKDKIYVDINSKQN 60
MDSAAKGFTVPVVSEWEFEVKSSDSTQVFLIPDQPPIKHCFDGNRLRKDKIYVDINSKQN
Sbjct: 1 MDSAAKGFTVPVVSEWEFEVKSSDSTQVFLIPDQPPIKHCFDGNRLRKDKIYVDINSKQN 60
Query: 61 LMGFAIRQLSHPSTIQFIHRWMKLPNSPSRETTIST------------------------ 96
LMGFAIRQLSHPSTIQFIHRWMKLPNSPSRETTIST
Sbjct: 61 LMGFAIRQLSHPSTIQFIHRWMKLPNSPSRETTISTSEYLLTELKTHLRVPLEEAPVFSR 120
Query: 97 -------------RWDEHVRGGELVVKWDADTYGSSWRNRRSATTPNRGRGEQKRSGQLG 143
RWDEHVRGGELVVKWDADTYGSSWRNRRSATTPNRGRGEQKRSGQLG
Sbjct: 121 ETVQQGGKSRPCCRWDEHVRGGELVVKWDADTYGSSWRNRRSATTPNRGRGEQKRSGQLG 180
Query: 144 DIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRSGRGPRRGPEVW 203
DIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRSGRGPRRGPEVW
Sbjct: 181 DIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRSGRGPRRGPEVW 240
Query: 204 PRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSGGLAEVRGGPGGLAEVRGGPGG 263
PRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSGGLAEVRGGPGGLAEVRGGPGG
Sbjct: 241 PRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSGGLAEVRGGPGGLAEVRGGPGG 300
Query: 264 LAEVIIVKPRAMRGLCSVGQEAKSGTGPTVGCY 296
LAEVIIVKPRAMRGLCSVGQEAKSGTGPTVGCY
Sbjct: 301 LAEVIIVKPRAMRGLCSVGQEAKSGTGPTVGCY 333
>gi|239756978 PREDICTED: hypothetical protein XP_002345135 [Homo
sapiens]
Length = 187
Score = 182 bits (462), Expect = 3e-46
Identities = 95/125 (76%), Positives = 97/125 (77%), Gaps = 11/125 (8%)
Query: 183 GRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSG 242
G+ PR A + GPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEG G
Sbjct: 63 GQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPG 122
Query: 243 GLAEVRGGP--GGLAEVRG---------GPGGLAEVIIVKPRAMRGLCSVGQEAKSGTGP 291
GLAEVRGG G RG GPGGLAEVIIVKPRAMRGLCSVGQEAKSGTGP
Sbjct: 123 GLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGLAEVIIVKPRAMRGLCSVGQEAKSGTGP 182
Query: 292 TVGCY 296
TVGCY
Sbjct: 183 TVGCY 187
>gi|239756562 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 45.1 bits (105), Expect = 8e-05
Identities = 51/167 (30%), Positives = 67/167 (40%), Gaps = 36/167 (21%)
Query: 130 NRGRGEQKRSGQLGDIKRGKGGERNVPAGP-----------------GGSAAANDLRRSR 172
+RGR E +RS Q K G G R V GP A + + RSR
Sbjct: 76 HRGRAE-RRSMQAAAAKAGSPGRRRVGKGPPSRESWTRSAPQRCPSQDAGRAGSRVCRSR 134
Query: 173 VSAPVWQRARGRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRR-GP 231
+ Q+A G +R G+ PRR ++ A+ RGG +S + PRR G
Sbjct: 135 PQSRGGQKAAASGAKRRGVGGKEPRR--------QKPAAAGAKSRGG--KSHKKPRRRGQ 184
Query: 232 EVWPRSEEGSGGLAEVRGGPGGLAEVRGGPGGLAEVIIVKPRAMRGL 278
+ P G GG + G A+ RGG GG KPR R L
Sbjct: 185 KAAPAKNSGGGGNKPQKAAAAG-AKNRGGGGG------KKPRRGRRL 224
>gi|4503509 eukaryotic translation initiation factor 3, subunit 10
theta, 150/170kDa [Homo sapiens]
Length = 1382
Score = 44.3 bits (103), Expect = 1e-04
Identities = 43/133 (32%), Positives = 54/133 (40%), Gaps = 13/133 (9%)
Query: 113 ADTYGSSWRNRRSATTPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSR 172
AD +WR+ P RG E + S + D RG + GP A ++ R
Sbjct: 1002 ADEDRGNWRHADDDRPPRRGLDEDRGSWRTADEDRGPRRGMDDDRGPRRGGADDERSSWR 1061
Query: 173 VSAPVWQRARG----RGPRRARRSGRGPR------RGPEVWPRSEEGP-GGLAEVRGGAR 221
+ RG RGPRR RGPR RGP + GP GL + RG R
Sbjct: 1062 NADDDRGPRRGLDDDRGPRRGMDDDRGPRRGMDDDRGPRRGMDDDRGPRRGLDDDRGPWR 1121
Query: 222 RS--GRGPRRGPE 232
+ R PRRG E
Sbjct: 1122 NADDDRIPRRGAE 1134
Score = 30.8 bits (68), Expect = 1.5
Identities = 50/177 (28%), Positives = 72/177 (40%), Gaps = 38/177 (21%)
Query: 118 SSWRNRRSATTPNRGR---GEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVS 174
S W +R S T +G E +R + +RG+G + + S ++ R R+
Sbjct: 888 SRWGDRDSEGTWRKGPEADSEWRRGPPEKEWRRGEGRDED------RSHRRDEERPRRLG 941
Query: 175 -----APVWQRARGRGPRRARRSGRGPRRGPE--------------VWPRSEEG--PGGL 213
P + R PRR RGPRRGPE W +++ P +
Sbjct: 942 DDEDREPSLRPDDDRVPRRGMDDDRGPRRGPEEDRFSRRGADDDRPSWRNTDDDRPPRRI 1001
Query: 214 A-EVRGGARRS--GRGPRRGPEVWPRSEEGSGGLA-EVRGGPGGLAEVRGGPGGLAE 266
A E RG R + R PRRG + + GS A E RG G+ + RG G A+
Sbjct: 1002 ADEDRGNWRHADDDRPPRRGLD----EDRGSWRTADEDRGPRRGMDDDRGPRRGGAD 1054
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 44.3 bits (103), Expect = 1e-04
Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 19/180 (10%)
Query: 120 WRNRRSAT--TPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPV 177
WR ++SA + NRG G QK + G + +GGE+ A G+ + + + R A
Sbjct: 140 WRAQKSAAAGSKNRGAGAQKAAAAAG--VKSQGGEKPQKAAAAGAKSRSGKKPRRRGAKS 197
Query: 178 WQRARGRGPRRARRSGRGPRRG--PEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWP 235
+G +R +S G RG + R + GG RGG ++ + RRG +
Sbjct: 198 RGDEDKKGRQREAKSRFGKTRGGRRKKHRRPKPAAGGAKSRRGGGKKPQKQRRRGQKA-- 255
Query: 236 RSEEGSGGLAEVRGGPGGLAEVRGGPGGLAEVIIVKPRAMRGLCSVGQ----EAKSGTGP 291
+ G + + RGG +G LA RG + G+ + + G GP
Sbjct: 256 -ATGGKSRVGKSRGGGDKKLRRQGQNAALAGA------KRRGAATAGEKPAAKGRGGRGP 308
Score = 40.4 bits (93), Expect = 0.002
Identities = 59/203 (29%), Positives = 79/203 (38%), Gaps = 39/203 (19%)
Query: 119 SWRNRRSATTPNRGRGEQKRSGQ-----------LGDIKRGKGGERNVPAGPGGSAAAND 167
+WR +++A T + R + R GQ G RG GG++ P +AA ++
Sbjct: 616 AWR-QKAAGTGAKSRKKPWRRGQKDAAAAEKAWATGATSRGSGGKQ--PRWQKPAAAGSE 672
Query: 168 LRRSRVSAPVWQRARGRG-PRRARRSGRGPRR-----GPEVWPRSEEGP-------GGLA 214
S +A V Q A R PRR R RG G W R + P GG A
Sbjct: 673 ---SSAAAAVGQEAEARKKPRRRRAKSRGDGGQNAAVGINPWQRRGKKPRLGKSRGGGGA 729
Query: 215 EVRG--GARRSGRG---PRRGPEVWPRSEEGSGGLAEVRGG----PGGLAEVRGGPGGLA 265
+ RG GA+ G G R G + G GG RGG G V G A
Sbjct: 730 KSRGSGGAKSRGSGGAKSRSGKKAAASKSHGGGGAKRRRGGGAKSRSGEKAVTAGGQKAA 789
Query: 266 EVIIVKPRAMRGLCSVGQEAKSG 288
KP ++ GQ+A +G
Sbjct: 790 AAGGKKPPRVKSRGGRGQKAAAG 812
Score = 39.3 bits (90), Expect = 0.004
Identities = 41/159 (25%), Positives = 59/159 (37%), Gaps = 21/159 (13%)
Query: 117 GSSWRNRRSATTPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAP 176
G S + RR + RG + RSG G R +G + A G+ + D ++ R
Sbjct: 422 GGSKKPRRRGPKAAKSRGGKSRSGG-GKKPRRRGQKARQKAAEAGAESRGDKKQGR---- 476
Query: 177 VWQRARGRGPRRARRSGRGPRRGPEVWPRSE--EGPGGLAEVRGGARRSGRGPRRGPEVW 234
Q+A G ++R G G +W R + E G A G R + PRR
Sbjct: 477 --QKASAAG-TKSRGGGLKSHSGKNLWRRGQKAEAAGEKATAAGAKSRGRKQPRRQKPAV 533
Query: 235 PRSEEGSGG-----------LAEVRGGPGGLAEVRGGPG 262
++ GG G GG + RGG G
Sbjct: 534 AGAKSRVGGSKSRQRQKAVAAGATSHGGGGNKQSRGGGG 572
Score = 36.6 bits (83), Expect = 0.027
Identities = 47/180 (26%), Positives = 63/180 (35%), Gaps = 25/180 (13%)
Query: 117 GSSWRNRRSATTPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAP 176
GS R R+ A G G G K+ +GG N P G +AAA R P
Sbjct: 542 GSKSRQRQKAVAA----GATSHGG--GGNKQSRGGGGNKPRQWGQTAAAAKTRGGGDKQP 595
Query: 177 VWQRAR-----------GRGPRRARRSGRGPRRGPEVWPRSEEGPGGL--AEVRGGARR- 222
WQ+A G+ R + +G G + + W R ++ A G R
Sbjct: 596 GWQKAAAGVTKSRSGDGGKKAWRQKAAGTGAKSRKKPWRRGQKDAAAAEKAWATGATSRG 655
Query: 223 -SGRGPRRGPEVWPRSEEGS----GGLAEVRGGPGGLAEVRGGPGGLAEVIIVKPRAMRG 277
G+ PR SE + G AE R P G GG + + P RG
Sbjct: 656 SGGKQPRWQKPAAAGSESSAAAAVGQEAEARKKPRRRRAKSRGDGGQNAAVGINPWQRRG 715
Score = 35.8 bits (81), Expect = 0.046
Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 13/144 (9%)
Query: 117 GSSWRNRRSATTPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRV--- 173
G + R R P R RG++ KRG GG++ A G + RR +
Sbjct: 313 GQNPRWGRGGKKPRR-RGQKATKAAAAGTKRGGGGQQKA-AVVGVKSRKKQRRRGKKPRR 370
Query: 174 --SAPVWQRARG----RGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRS--GR 225
++ ++RG +G R A+R G G ++ PR A+ RGG + R
Sbjct: 371 QKASAAGAKSRGGGDKKGLREAKRRGDGRKKPRWQNPRRRAQKAPAAKPRGGGSKKPRRR 430
Query: 226 GPRRGPEVWPRSEEGSGGLAEVRG 249
GP+ +S G G RG
Sbjct: 431 GPKAAKSRGGKSRSGGGKKPRRRG 454
Score = 35.4 bits (80), Expect = 0.061
Identities = 36/151 (23%), Positives = 56/151 (37%), Gaps = 17/151 (11%)
Query: 117 GSSWRNRRSATTPNRGRGEQKRSGQLGDIKRGK---GGERNVPAGPGGSAAANDLRRSRV 173
G + R P + R +++ G + GK GG++ + +A A RR
Sbjct: 233 GGAKSRRGGGKKPQKQRRRGQKAATGGKSRVGKSRGGGDKKLRRQGQNAALAGAKRRGAA 292
Query: 174 SAPVWQRARGRGPRRARR-SGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPE 232
+A A+GRG R + G+ PR G G G +R G G ++
Sbjct: 293 TAGEKPAAKGRGGRGPKSLGGQNPRWGRGGKKPRRRGQKATKAAAAGTKRGGGGQQKAAV 352
Query: 233 VW-------------PRSEEGSGGLAEVRGG 250
V PR ++ S A+ RGG
Sbjct: 353 VGVKSRKKQRRRGKKPRRQKASAAGAKSRGG 383
Score = 35.0 bits (79), Expect = 0.079
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 19/171 (11%)
Query: 103 RGGELVVKWDADTYGSSWRNRRSATTPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGS 162
R G+ A G++ + A GRG + GQ + + G+GG++ G +
Sbjct: 276 RQGQNAALAGAKRRGAATAGEKPAAKGRGGRGPKSLGGQ--NPRWGRGGKKPRRRGQKAT 333
Query: 163 -AAANDLRRS----RVSAPVWQRARGRGPRRARRSGRGPRRGPEVWPRSEEGPGG----- 212
AAA +R + +A V ++R ++ RR G+ PRR ++ GG
Sbjct: 334 KAAAAGTKRGGGGQQKAAVVGVKSR----KKQRRRGKKPRRQKASAAGAKSRGGGDKKGL 389
Query: 213 -LAEVRGGARRSGR--GPRRGPEVWPRSEEGSGGLAEVRGGPGGLAEVRGG 260
A+ RG R+ R PRR + P ++ GG + R A+ RGG
Sbjct: 390 REAKRRGDGRKKPRWQNPRRRAQKAPAAKPRGGGSKKPRRRGPKAAKSRGG 440
Score = 33.9 bits (76), Expect = 0.18
Identities = 41/170 (24%), Positives = 61/170 (35%), Gaps = 11/170 (6%)
Query: 131 RGRGEQK-------RSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARG 183
RG G +K R Q + +GG P G AA + +SR R RG
Sbjct: 395 RGDGRKKPRWQNPRRRAQKAPAAKPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRG 454
Query: 184 RGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGP---RRGPEVWPRSEEG 240
+ R+ RG + R + G + RGG +S G RRG + E+
Sbjct: 455 QKARQKAAEAGAESRGDKKQGRQKASAAG-TKSRGGGLKSHSGKNLWRRGQKAEAAGEKA 513
Query: 241 SGGLAEVRGGPGGLAEVRGGPGGLAEVIIVKPRAMRGLCSVGQEAKSGTG 290
+ A+ RG + G + V K R + + G + G G
Sbjct: 514 TAAGAKSRGRKQPRRQKPAVAGAKSRVGGSKSRQRQKAVAAGATSHGGGG 563
Score = 33.1 bits (74), Expect = 0.30
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 17/193 (8%)
Query: 113 ADTYGSSWRNRRSATTPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSR 172
A + G R+ RG+ ++++ + G RG + A G+ + +S
Sbjct: 435 AKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAESRGDKKQGRQKASAAGTKSRGGGLKSH 494
Query: 173 VSAPVWQRARGRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPE 232
+W+R + + + G + PR ++ A+ R G +S + R+
Sbjct: 495 SGKNLWRRGQKAEAAGEKATAAGAKSRGRKQPRRQKPAVAGAKSRVGGSKSRQ--RQKAV 552
Query: 233 VWPRSEEGSGGLAEVRGGPG----------GLAEVRGG----PG-GLAEVIIVKPRAMRG 277
+ G GG + RGG G A+ RGG PG A + K R+ G
Sbjct: 553 AAGATSHGGGGNKQSRGGGGNKPRQWGQTAAAAKTRGGGDKQPGWQKAAAGVTKSRSGDG 612
Query: 278 LCSVGQEAKSGTG 290
++ +GTG
Sbjct: 613 GKKAWRQKAAGTG 625
Score = 32.3 bits (72), Expect = 0.51
Identities = 44/193 (22%), Positives = 71/193 (36%), Gaps = 19/193 (9%)
Query: 113 ADTYGSSWRNRRSAT---TPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLR 169
A++ G + R+ A+ T +RG G + SG+ +RG+ E A + +
Sbjct: 466 AESRGDKKQGRQKASAAGTKSRGGGLKSHSGK-NLWRRGQKAEAAGEKATAAGAKSRGRK 524
Query: 170 RSRVSAPVWQRARGR-GPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRG-- 226
+ R P A+ R G ++R+ + G + G GG + RGG R
Sbjct: 525 QPRRQKPAVAGAKSRVGGSKSRQRQKAVAAGA-----TSHGGGGNKQSRGGGGNKPRQWG 579
Query: 227 -------PRRGPEVWPRSEEGSGGLAEVRGGPGGLAEVRGGPGGLAEVIIVKPRAMRGLC 279
R G + P ++ + G+ + R G GG R G KP
Sbjct: 580 QTAAAAKTRGGGDKQPGWQKAAAGVTKSRSGDGGKKAWRQKAAGTGAKSRKKPWRRGQKD 639
Query: 280 SVGQEAKSGTGPT 292
+ E TG T
Sbjct: 640 AAAAEKAWATGAT 652
Score = 29.3 bits (64), Expect = 4.3
Identities = 33/150 (22%), Positives = 53/150 (35%), Gaps = 33/150 (22%)
Query: 80 RWMKLPNSPSRETTISTRWDEHVRGGELVVKWDADTYGSSWRNRRSATTPNRGRGEQKRS 139
RW K P + E++ + + + + A + G +N P + RG++ R
Sbjct: 662 RWQK-PAAAGSESSAAAAVGQEAEARKKPRRRRAKSRGDGGQNAAVGINPWQRRGKKPRL 720
Query: 140 GQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRSGRG-PRR 198
G+ RG GG ++ RG G ++R SG R
Sbjct: 721 GK----SRGGGGAKS---------------------------RGSGGAKSRGSGGAKSRS 749
Query: 199 GPEVWPRSEEGPGGLAEVRGGARRSGRGPR 228
G + G GG RGG +S G +
Sbjct: 750 GKKAAASKSHGGGGAKRRRGGGAKSRSGEK 779
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 43.9 bits (102), Expect = 2e-04
Identities = 49/170 (28%), Positives = 63/170 (37%), Gaps = 14/170 (8%)
Query: 105 GELVVKWDADTYGSSWRNRRSATTPNRGRGEQKRS-GQLGDI-KRGKGGERNVPAGPGGS 162
G++ +K D G +GRG G LG ++GK G +P PG
Sbjct: 820 GDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQ 879
Query: 163 AAANDLRRSRVSAPVWQRARGRGPRRARRSGRGPR--RGPEVWPRSEEGPGGLAEVRGGA 220
+ + P + A G R GPR RGP PR E GP G+ G
Sbjct: 880 GP-----KGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGP-TGPRGERGPRGITGKPGPK 933
Query: 221 RRSGRGPRRGP--EVWPRSEEGSGGLAEVRG--GPGGLAEVRGGPGGLAE 266
SG GP E P +G G +G GP G + G PG E
Sbjct: 934 GNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGE 983
Score = 32.0 bits (71), Expect = 0.67
Identities = 34/109 (31%), Positives = 42/109 (38%), Gaps = 21/109 (19%)
Query: 156 PAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAE 215
PAGP G R V P G G + GP+ PR +GP G A
Sbjct: 560 PAGPMGLTG----RPGPVGPP------GSGGLKGEPGDVGPQG-----PRGVQGPPGPAG 604
Query: 216 VRGGARRSGRGPRRG--PEVWPRSEEGSGGLAEVRGGPGGLAEVRGGPG 262
G R+G RG + P+ + G GLA + G G RG PG
Sbjct: 605 KPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGH----RGDPG 649
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 43.5 bits (101), Expect = 2e-04
Identities = 46/156 (29%), Positives = 63/156 (40%), Gaps = 25/156 (16%)
Query: 134 GEQKRSGQLGDIKRGKGGERNVPAGPG--GSAAANDLRRSR-VSAPVWQRARGRGPRRAR 190
G + R G++G+ G+ P PG G A LR + V PV ++ P
Sbjct: 1628 GPRGRDGEVGE-----KGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDG 1682
Query: 191 RSGRGPRRGPEVWPRSEEG-------PGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSGG 243
R+G GP + + G PG L + GAR G RG E PR +G G
Sbjct: 1683 RNGSPGSSGP----KGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQE-GPRGPKGDPG 1737
Query: 244 LAEVRGGPG--GLAEVRGGPGGLAEVIIVKPRAMRG 277
L G PG G+ RG PG + + P +G
Sbjct: 1738 LP---GAPGERGIEGFRGPPGPQGDPGVRGPAGEKG 1770
Score = 38.5 bits (88), Expect = 0.007
Identities = 47/163 (28%), Positives = 61/163 (37%), Gaps = 19/163 (11%)
Query: 127 TTPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRS--------RVSAPVW 178
T P RGE G+ +G GER + PG + L + R W
Sbjct: 1909 TGPKGDRGETGSKGE-----QGLPGERGLRGEPGSVPNVDRLLETAGIKASALREIVETW 1963
Query: 179 QRARGRG-PRRARRSGRGPRRGP-EVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPR 236
+ G P RR RGP+ E P +EGP G RG G +GP
Sbjct: 1964 DESSGSFLPVPERR--RGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLAL 2021
Query: 237 SEEGSGGLAEVRGGPG--GLAEVRGGPGGLAEVIIVKPRAMRG 277
E G G + + G PG G+ + G GG+ E R RG
Sbjct: 2022 GERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERG 2064
Score = 38.1 bits (87), Expect = 0.009
Identities = 39/150 (26%), Positives = 57/150 (38%), Gaps = 10/150 (6%)
Query: 129 PNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRR 188
P+ +GE +G G G G +P PG S + V + + P R
Sbjct: 2202 PSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGR 2261
Query: 189 ARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSGGLAEVR 248
SG+ RG P S PG + + GP P ++ G G +
Sbjct: 2262 DGASGKDGDRGSPGVPGSPGLPGPVGP------KGEPGPTGAP---GQAVVGLPGAKGEK 2312
Query: 249 GGPGGLA-EVRGGPGGLAEVIIVKPRAMRG 277
G PGGLA ++ G PG + + PR +G
Sbjct: 2313 GAPGGLAGDLVGEPGAKGDRGLPGPRGEKG 2342
Score = 37.7 bits (86), Expect = 0.012
Identities = 47/163 (28%), Positives = 64/163 (39%), Gaps = 34/163 (20%)
Query: 132 GRGEQKRSGQLGDIKRGKGGERNV--------------PAGPGGSAAANDLRRSRVSA-- 175
G GE R G+ G+ RG+ GER P GP G + D +S
Sbjct: 2050 GVGEAGRPGERGE--RGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQ 2107
Query: 176 --PVWQRARGRGPRRARRSGRGPRRGP-------EVWPRSEEGPGGLAEVRGGARRSGR- 225
P + A+G + +G R P E PR ++G GL RG A G+
Sbjct: 2108 GPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKP 2167
Query: 226 ---GPRRGP-EVWPRSEEGSGGLAEVRG--GPGGLAEVRGGPG 262
GPR P V + G G + G GP G + ++G PG
Sbjct: 2168 GLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPG 2210
Score = 33.9 bits (76), Expect = 0.18
Identities = 43/154 (27%), Positives = 52/154 (33%), Gaps = 22/154 (14%)
Query: 134 GEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRSG 193
G + G+ GD + G G P PG Q RG +
Sbjct: 1439 GPPGKKGEKGDSEDGAPGLPGQPGSPGE-----------------QGPRGPPGAIGPKGD 1481
Query: 194 RG-PRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPE--VWPRSEEGSGGLAEVRGG 250
RG P E + E GP G A RG +GR +GPE P +G G G
Sbjct: 1482 RGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGD 1541
Query: 251 PGGLAEVRGGPGGLAEVIIVKPRAMRGLCSVGQE 284
P + GP G E V P RG V E
Sbjct: 1542 PAVVGPAVAGPKG--EKGDVGPAGPRGATGVQGE 1573
Score = 33.9 bits (76), Expect = 0.18
Identities = 48/154 (31%), Positives = 62/154 (40%), Gaps = 23/154 (14%)
Query: 134 GEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRSG 193
G+ G++G + G GER + PG L V GP A SG
Sbjct: 2407 GQTGPRGEMG--QPGPSGERGLAGPPGREGIPGPLGPPGPPGSV-------GPPGA--SG 2455
Query: 194 -RGPRRGPEVW---PRSEEGPGGLAEVRGGARRSGR-GPR--RGP--EVWPRSEEGSGGL 244
+G + P V PR E G G +RG R G+ GPR GP R E+G G
Sbjct: 2456 LKGDKGDPGVGLPGPRGERGEPG---IRGEDGRPGQEGPRGLTGPPGSRGERGEKGDVGS 2512
Query: 245 AEVRGGPGGLAEVRGGPGGLAEVIIVKPRAMRGL 278
A ++G G A + G PG + R RGL
Sbjct: 2513 AGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGL 2546
Score = 31.2 bits (69), Expect = 1.1
Identities = 41/134 (30%), Positives = 50/134 (37%), Gaps = 13/134 (9%)
Query: 134 GEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRSG 193
GEQ G G I G G+R P GP G A R P +RG R
Sbjct: 1465 GEQGPRGPPGAI--GPKGDRGFP-GPLGEAGEKGER----GPPGPAGSRGLPGVAGRPGA 1517
Query: 194 RGPRRGPEVWPRS----EEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSGGLAEVRG 249
+GP P R E G G V G A +G + +V P G+ G+ RG
Sbjct: 1518 KGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKG--DVGPAGPRGATGVQGERG 1575
Query: 250 GPGGLAEVRGGPGG 263
PG + GP G
Sbjct: 1576 PPGLVLPGDPGPKG 1589
Score = 29.6 bits (65), Expect = 3.3
Identities = 33/131 (25%), Positives = 48/131 (36%), Gaps = 24/131 (18%)
Query: 133 RGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRS 192
+G++ G++G RG+ G P PG R AP Q GP
Sbjct: 1253 KGQKGEPGEMG--LRGQVGPPGDPGLPG-----------RTGAPGPQ-----GP-----P 1289
Query: 193 GRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEV-WPRSEEGSGGLAEVRGGP 251
G +G +P ++ PG G + P + PR + G G +G P
Sbjct: 1290 GSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEP 1349
Query: 252 GGLAEVRGGPG 262
G +V GG G
Sbjct: 1350 GAPGQVIGGEG 1360
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 43.5 bits (101), Expect = 2e-04
Identities = 45/134 (33%), Positives = 53/134 (39%), Gaps = 23/134 (17%)
Query: 119 SWRNRRSATTPNRGRGEQKRSGQLGDIKRGKGGERNVPA--GP---GGSAAANDLRRSRV 173
++ + R P R RG R L + G GG R P+ GP GG A DLR SR
Sbjct: 88 AFESSRRGPPPPRSRG---RPRFLRGTRGGGGGPRRSPSRGGPDDDGGYTADFDLRPSRA 144
Query: 174 SAPVWQRARGRGPRRARRSGRGPRRGPEVWPRSEEGPG---------GLAEVRGGARRSG 224
P+ RG PRR G P+R P G G G G RR
Sbjct: 145 PMPM---KRGPPPRRV---GPPPKRAAPSGPARSSGGGMRGRALAVRGRDGYSGPPRREP 198
Query: 225 RGPRRGPEVWPRSE 238
PRR P + PR E
Sbjct: 199 LPPRRDPYLGPRDE 212
Score = 28.1 bits (61), Expect = 9.7
Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 176 PVWQRARGRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWP 235
P R R R R R G GPRR P ++G G A+ R+ +RGP P
Sbjct: 98 PPRSRGRPRFLRGTRGGGGGPRRSPSRGGPDDDG-GYTADFDLRPSRAPMPMKRGPP--P 154
Query: 236 RSEEGSGGLAEVRGGPGGLAEVRGG 260
R G R P G A GG
Sbjct: 155 RRV----GPPPKRAAPSGPARSSGG 175
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 43.1 bits (100), Expect = 3e-04
Identities = 41/125 (32%), Positives = 43/125 (34%), Gaps = 17/125 (13%)
Query: 147 RGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRSGRGPRRGPEVWPRS 206
R GG N GPGG R P G G R GP G R
Sbjct: 729 RSGGGPPNGRGGPGGGMVGGGGHR-----PHEGPGGGMGNSSGHRPHEGPGGGMGSGHRP 783
Query: 207 EEGPGGLAEVRGGARRSGRGPRRG--------PEVWPRSEEGSGGLAEVRGGPGGLAEVR 258
EGPGG + GG R GP G P P G+GG GPGG
Sbjct: 784 HEGPGG-SMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGG---SM 839
Query: 259 GGPGG 263
GG GG
Sbjct: 840 GGSGG 844
Score = 38.5 bits (88), Expect = 0.007
Identities = 43/141 (30%), Positives = 47/141 (33%), Gaps = 42/141 (29%)
Query: 148 GKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRSGRGPRRGPEVWPRSE 207
G G ++ P GPGG PV R G P PR G W
Sbjct: 636 GPKGMQHFPPGPGGPMPGP---HGGPGGPVGPRLLGPPPP--------PRGGDPFW---- 680
Query: 208 EGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGS-------------------GGLAEVR 248
+GPG +RGG R G GP GP R G GG R
Sbjct: 681 DGPGD--PMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGR 738
Query: 249 GGPGGLAEVRG------GPGG 263
GGPGG G GPGG
Sbjct: 739 GGPGGGMVGGGGHRPHEGPGG 759
Score = 32.7 bits (73), Expect = 0.39
Identities = 29/86 (33%), Positives = 32/86 (37%), Gaps = 14/86 (16%)
Query: 183 GRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSG 242
G GP R GRG P P GG + GG +GRG G V G G
Sbjct: 699 GPGPYHRGRGGRGGNEPPPPPPPFRGARGGRS---GGGPPNGRGGPGGGMV------GGG 749
Query: 243 GLAEVRGGPGGLAEVRG-----GPGG 263
G G GG+ G GPGG
Sbjct: 750 GHRPHEGPGGGMGNSSGHRPHEGPGG 775
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 43.1 bits (100), Expect = 3e-04
Identities = 56/182 (30%), Positives = 67/182 (36%), Gaps = 30/182 (16%)
Query: 85 PNSPS---RETTISTRWDEHVRGGELVVKWDA-DTYGSSWRNRRSATTPNRGRGEQKRSG 140
P+SPS R+ + RG E A + G R A R R ++RS
Sbjct: 338 PSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSR 397
Query: 141 QLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRSGRGPRRGP 200
R +G R PA P GS + L R+R S+ GRG P GP
Sbjct: 398 SSASAPRRRGRRRPRPAPPRGS--SRSLSRARSSS---DSGSGRG---------APGPGP 443
Query: 201 EVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSGGLAEVRGGPGGLAEVRG- 259
E P SE G GG R R P P S S G RGGP G + R
Sbjct: 444 E--PGSERGHGG---------HGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSP 492
Query: 260 GP 261
GP
Sbjct: 493 GP 494
>gi|239755509 PREDICTED: hypothetical protein [Homo sapiens]
Length = 344
Score = 42.7 bits (99), Expect = 4e-04
Identities = 39/110 (35%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Query: 134 GEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRSG 193
GE + G+ D++ + G GP AAA LR SR A W R RR RR
Sbjct: 165 GEPELWGRRSDVQPQERGGGGRGRGPPSQAAAFSLRHSR--AQPWPSGRS-AARRRRRLR 221
Query: 194 RGPRRGPEVWPRSEEGPGGLAEVRGGA---RRSGRGPRRGPEVWPRSEEG 240
R RRG +E G GG V GA R G R P PR G
Sbjct: 222 RRRRRGERAAAAAEFGLGGRTCVWQGAAQHRARPAGLARAPRARPRDPAG 271
>gi|239750019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 344
Score = 42.7 bits (99), Expect = 4e-04
Identities = 39/110 (35%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Query: 134 GEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRSG 193
GE + G+ D++ + G GP AAA LR SR A W R RR RR
Sbjct: 165 GEPELWGRRSDVQPQERGGGGRGRGPPSQAAAFSLRHSR--AQPWPSGRS-AARRRRRLR 221
Query: 194 RGPRRGPEVWPRSEEGPGGLAEVRGGA---RRSGRGPRRGPEVWPRSEEG 240
R RRG +E G GG V GA R G R P PR G
Sbjct: 222 RRRRRGERAAAAAEFGLGGRTCVWQGAAQHRARPAGLARAPRARPRDPAG 271
>gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo
sapiens]
Length = 344
Score = 42.7 bits (99), Expect = 4e-04
Identities = 39/110 (35%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Query: 134 GEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRSG 193
GE + G+ D++ + G GP AAA LR SR A W R RR RR
Sbjct: 165 GEPELWGRRSDVQPQERGGGGRGRGPPSQAAAFSLRHSR--AQPWPSGRS-AARRRRRLR 221
Query: 194 RGPRRGPEVWPRSEEGPGGLAEVRGGA---RRSGRGPRRGPEVWPRSEEG 240
R RRG +E G GG V GA R G R P PR G
Sbjct: 222 RRRRRGERAAAAAEFGLGGRTCVWQGAAQHRARPAGLARAPRARPRDPAG 271
>gi|239753353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 448
Score = 42.4 bits (98), Expect = 5e-04
Identities = 53/184 (28%), Positives = 77/184 (41%), Gaps = 35/184 (19%)
Query: 129 PNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGS-AAANDLRRSRVSAPVWQRARGRGPR 187
P G ++RSG +K +GG R G G S AA++L +RAR + P+
Sbjct: 4 PRAGNCRKERSGGAARVKGPRGGGR--AGGTGRSITAASELSPG-------ERARRKKPQ 54
Query: 188 RARRSGRG--------PRRGPEVWPRSEEGPGGLA-EVRGGARRSGRGPRRGPEVWPRSE 238
AR + R P P R PGG +VRGGAR S R P E+ P E
Sbjct: 55 SAREASRAWEASISRDPALSPGRGRRQTGSPGGEGRQVRGGARNS-RDPGLRSEMRPFRE 113
Query: 239 EGSGGL--AEVRGGPGGLAEV---------RGGPGGLAEVIIVKPRAMRGLCSVGQEAKS 287
+ L + RG G + RG P + V++++ R + G+ Q+ +
Sbjct: 114 AFAKLLSGSPERGALSGEFSLGLENRPRAHRGAPAAVMVVVVMRLRGLSGV----QQRRR 169
Query: 288 GTGP 291
G P
Sbjct: 170 GLQP 173
>gi|239747921 PREDICTED: hypothetical protein XP_002346480 [Homo
sapiens]
Length = 448
Score = 42.4 bits (98), Expect = 5e-04
Identities = 53/184 (28%), Positives = 77/184 (41%), Gaps = 35/184 (19%)
Query: 129 PNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGS-AAANDLRRSRVSAPVWQRARGRGPR 187
P G ++RSG +K +GG R G G S AA++L +RAR + P+
Sbjct: 4 PRAGNCRKERSGGAARVKGPRGGGR--AGGTGRSITAASELSPG-------ERARRKKPQ 54
Query: 188 RARRSGRG--------PRRGPEVWPRSEEGPGGLA-EVRGGARRSGRGPRRGPEVWPRSE 238
AR + R P P R PGG +VRGGAR S R P E+ P E
Sbjct: 55 SAREASRAWEASISRDPALSPGRGRRQTGSPGGEGRQVRGGARNS-RDPGLRSEMRPFRE 113
Query: 239 EGSGGL--AEVRGGPGGLAEV---------RGGPGGLAEVIIVKPRAMRGLCSVGQEAKS 287
+ L + RG G + RG P + V++++ R + G+ Q+ +
Sbjct: 114 AFAKLLSGSPERGALSGEFSLGLENRPRAHRGAPAAVMVVVVMRLRGLSGV----QQRRR 169
Query: 288 GTGP 291
G P
Sbjct: 170 GLQP 173
>gi|239741815 PREDICTED: hypothetical protein XP_002342320 [Homo
sapiens]
Length = 448
Score = 42.4 bits (98), Expect = 5e-04
Identities = 53/184 (28%), Positives = 77/184 (41%), Gaps = 35/184 (19%)
Query: 129 PNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGS-AAANDLRRSRVSAPVWQRARGRGPR 187
P G ++RSG +K +GG R G G S AA++L +RAR + P+
Sbjct: 4 PRAGNCRKERSGGAARVKGPRGGGR--AGGTGRSITAASELSPG-------ERARRKKPQ 54
Query: 188 RARRSGRG--------PRRGPEVWPRSEEGPGGLA-EVRGGARRSGRGPRRGPEVWPRSE 238
AR + R P P R PGG +VRGGAR S R P E+ P E
Sbjct: 55 SAREASRAWEASISRDPALSPGRGRRQTGSPGGEGRQVRGGARNS-RDPGLRSEMRPFRE 113
Query: 239 EGSGGL--AEVRGGPGGLAEV---------RGGPGGLAEVIIVKPRAMRGLCSVGQEAKS 287
+ L + RG G + RG P + V++++ R + G+ Q+ +
Sbjct: 114 AFAKLLSGSPERGALSGEFSLGLENRPRAHRGAPAAVMVVVVMRLRGLSGV----QQRRR 169
Query: 288 GTGP 291
G P
Sbjct: 170 GLQP 173
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 42.0 bits (97), Expect = 6e-04
Identities = 42/132 (31%), Positives = 50/132 (37%), Gaps = 24/132 (18%)
Query: 129 PNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAA----NDLRRSRVSAPV-----WQ 179
P + GE G G GG+ + G GSA A + +RR W+
Sbjct: 12 PEQEEGESAAGGS------GAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGRGRWK 65
Query: 180 RA--------RGRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRG-PRRG 230
+A RGRG R R GRG RG P G GG GG G G PRR
Sbjct: 66 QAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRRE 125
Query: 231 PEVWPRSEEGSG 242
P +P G G
Sbjct: 126 PVPFPSGSAGPG 137
Score = 33.9 bits (76), Expect = 0.18
Identities = 34/115 (29%), Positives = 41/115 (35%), Gaps = 18/115 (15%)
Query: 97 RWDEHVRGGELVVKWDADTYGSSWRNRRSATTPNRGRGEQKRSGQLGDIKRGKGGERNVP 156
RW + RGG G R R RGRG + G+ G GG+
Sbjct: 63 RWKQAGRGG-----------GVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGG-G 110
Query: 157 AGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRSGRGPRRG----PEVWPRSE 207
G GGS RR V P + G GPR R + G R P W + E
Sbjct: 111 CGGGGSGGGGAPRREPVPFP--SGSAGPGPRGPRATESGKRMDCPALPPGWKKEE 163
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 42.0 bits (97), Expect = 6e-04
Identities = 42/132 (31%), Positives = 50/132 (37%), Gaps = 24/132 (18%)
Query: 129 PNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAA----NDLRRSRVSAPV-----WQ 179
P + GE G G GG+ + G GSA A + +RR W+
Sbjct: 12 PEQEEGESAAGGS------GAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGRGRWK 65
Query: 180 RA--------RGRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRG-PRRG 230
+A RGRG R R GRG RG P G GG GG G G PRR
Sbjct: 66 QAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRRE 125
Query: 231 PEVWPRSEEGSG 242
P +P G G
Sbjct: 126 PVPFPSGSAGPG 137
Score = 33.9 bits (76), Expect = 0.18
Identities = 34/115 (29%), Positives = 41/115 (35%), Gaps = 18/115 (15%)
Query: 97 RWDEHVRGGELVVKWDADTYGSSWRNRRSATTPNRGRGEQKRSGQLGDIKRGKGGERNVP 156
RW + RGG G R R RGRG + G+ G GG+
Sbjct: 63 RWKQAGRGG-----------GVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGG-G 110
Query: 157 AGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRSGRGPRRG----PEVWPRSE 207
G GGS RR V P + G GPR R + G R P W + E
Sbjct: 111 CGGGGSGGGGAPRREPVPFP--SGSAGPGPRGPRATESGKRMDCPALPPGWKKEE 163
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 41.2 bits (95), Expect = 0.001
Identities = 45/150 (30%), Positives = 57/150 (38%), Gaps = 21/150 (14%)
Query: 146 KRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRSGRGPRRGPEVWPR 205
++G GER P G AA + R V G G R S GP + P
Sbjct: 502 EKGPAGERGAPGPAGPRGAAGEPGRDGVPG-------GPGMRGMPGSPGGPGSDGKPGPP 554
Query: 206 SEEGPGGLAEVRGGARRSGRGPRRGPEVW----PRSEEGSGGLAEVRGGPGGLAEVRGGP 261
+G G G + GPR P V P+ +G+ G RGGPGG +G P
Sbjct: 555 GSQGESGRPGPPGPS-----GPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGP-QGPP 608
Query: 262 GGLAEVIIVKPRAMRGLCSVGQEAKSGTGP 291
G E P+ G G + K TGP
Sbjct: 609 GKNGE---TGPQGPPGPTGPGGD-KGDTGP 634
Score = 39.7 bits (91), Expect = 0.003
Identities = 43/134 (32%), Positives = 47/134 (35%), Gaps = 12/134 (8%)
Query: 134 GEQKRSGQLGDIKRGKGGERNVPAGPGGSAA-ANDLRRSRVSAPVWQRARGRGPRRARRS 192
GE G +G RG GER P PG + A ND R P GP
Sbjct: 291 GENGAPGPMGP--RGAPGERGRPGLPGAAGARGNDGARGSDGQP-----GPPGPPGTAGF 343
Query: 193 GRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSGGLAEV--RGG 250
P EV P G G RG G +GP P GG E+ G
Sbjct: 344 PGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGI 403
Query: 251 PG--GLAEVRGGPG 262
PG GL RG PG
Sbjct: 404 PGAPGLMGARGPPG 417
Score = 37.0 bits (84), Expect = 0.021
Identities = 51/176 (28%), Positives = 67/176 (38%), Gaps = 21/176 (11%)
Query: 132 GRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAA-----NDLRRSRVS-----APVWQRA 181
G+GE+ G+ +G+GG V PGGS A ++ R S A + A
Sbjct: 823 GKGERGAPGE-----KGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGA 877
Query: 182 RGRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGS 241
RG GP GP P ++GP G A G G +G P E+GS
Sbjct: 878 RGLPGPPGSNGNPGP-PGPSGSP-GKDGPPGPAGNTGAPGSPGVSGPKGDAGQP-GEKGS 934
Query: 242 GGLAEVRGGPG--GLAEVRGGPGGLAEVIIVKPRAMRGLCSV-GQEAKSGTGPTVG 294
G G PG G+A + G G + PR G V G+ K G G
Sbjct: 935 PGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSG 990
Score = 36.6 bits (83), Expect = 0.027
Identities = 43/142 (30%), Positives = 51/142 (35%), Gaps = 16/142 (11%)
Query: 133 RGEQKRSGQLGDI-------KRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRG 185
RG R+G+ G+ + G GE P G A + R R P ARG
Sbjct: 266 RGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGE--RGRPGLPGAAGARGND 323
Query: 186 PRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSGGLA 245
R GP GP PG EV G A G G R E G G A
Sbjct: 324 GARGSDGQPGPP-GPPGTAGFPGSPGAKGEV-GPAGSPGSNGAPGQ----RGEPGPQGHA 377
Query: 246 EVRGGPGGLAEVRGGPGGLAEV 267
+G PG + G PGG E+
Sbjct: 378 GAQGPPGPPG-INGSPGGKGEM 398
Score = 34.3 bits (77), Expect = 0.13
Identities = 40/143 (27%), Positives = 49/143 (34%), Gaps = 17/143 (11%)
Query: 134 GEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDL-RRSRVSAPVWQRARGR-GPRRARR 191
G + +GQ G+ +G G + P PG A R P RG GP+ +
Sbjct: 921 GPKGDAGQPGE--KGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKG 978
Query: 192 SGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWP-----------RSEEG 240
P R GP GL + G A GR G + P R E G
Sbjct: 979 ESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENG 1038
Query: 241 SGGLAEVRGGPGGLAEVRGGPGG 263
S G G PG V GP G
Sbjct: 1039 SPGAPGAPGHPGPPGPV--GPAG 1059
Score = 33.1 bits (74), Expect = 0.30
Identities = 39/147 (26%), Positives = 45/147 (30%), Gaps = 42/147 (28%)
Query: 133 RGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRS 192
RGE G G +G G + PGG AP ARG
Sbjct: 368 RGEPGPQGHAG--AQGPPGPPGINGSPGGKGEMGPA--GIPGAPGLMGARG--------- 414
Query: 193 GRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSGGLAEVRGGPG 252
P G G +RGGA G+ +G E PR E G G+ V G G
Sbjct: 415 -----------PPGPAGANGAPGLRGGAGEPGKNGAKG-EPGPRGERGEAGIPGVPGAKG 462
Query: 253 -----------------GLAEVRGGPG 262
G A RG PG
Sbjct: 463 EDGKDGSPGEPGANGLPGAAGERGAPG 489
Score = 30.0 bits (66), Expect = 2.5
Identities = 46/187 (24%), Positives = 65/187 (34%), Gaps = 27/187 (14%)
Query: 124 RSATTPNRGRGEQKRSGQLG-DIKRGKGGERNVP--AGPGGSAA-----ANDLRRSRVSA 175
R + P +GE + G G +RG G + +P AG G +D R +
Sbjct: 968 RGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGS 1027
Query: 176 PVWQRARGRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGP---- 231
P G+G R S P P GP G + RG + +G GP
Sbjct: 1028 P-----GGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSR 1082
Query: 232 ----EVWPRSEEGSGGLAEVRGGPGGLAEVRGGPGGLAEVIIVKPRAMRGLCSVGQEAKS 287
PR ++G G G G+ RG PG P +G ++G +
Sbjct: 1083 GAPGPQGPRGDKGETG----ERGAAGIKGHRGFPGNPGAPGSPGPAGQQG--AIGSPGPA 1136
Query: 288 GTGPTVG 294
G VG
Sbjct: 1137 GPRGPVG 1143
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 41.2 bits (95), Expect = 0.001
Identities = 45/147 (30%), Positives = 55/147 (37%), Gaps = 20/147 (13%)
Query: 116 YGSSWRNRRSATTPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRV-S 174
Y SS R+ S+ P G RSG+ G + P P GS++ RR R S
Sbjct: 2 YRSSARSSVSSHRPKDDGGGGPRSGRSSGSSSGPARRSSPPPPPSGSSSRTPARRPRSPS 61
Query: 175 APVWQRA-----RGR----GPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGR 225
+RA RGR P RARR P RG ++P GP G R S R
Sbjct: 62 GHRGRRASPSPPRGRRVSPSPPRARRGSPSPPRGRRLFP---PGPAGF-------RGSSR 111
Query: 226 GPRRGPEVWPRSEEGSGGLAEVRGGPG 252
G R + G R PG
Sbjct: 112 GESRADYARDGRGDHPGDSGSRRRSPG 138
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 41.2 bits (95), Expect = 0.001
Identities = 45/156 (28%), Positives = 62/156 (39%), Gaps = 21/156 (13%)
Query: 148 GKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGR----GPRRARRSGRGPRRGPEVW 203
GK G+ +P PG + + P G+ GP+ R G P +
Sbjct: 316 GKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGA---LG 372
Query: 204 PRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRS-----EEGSGGLAEVRGGPG-----G 253
PR E+GP G + G G GP P + +G GG+ +G PG G
Sbjct: 373 PRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPG 432
Query: 254 LAEVRGGPGGLAEVIIVKPRAMRGLCS-VGQEAKSG 288
L G PG L EV P MRGL +G + ++G
Sbjct: 433 LQGFPGKPGFLGEV---GPPGMRGLPGPIGPKGEAG 465
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 41.2 bits (95), Expect = 0.001
Identities = 45/156 (28%), Positives = 62/156 (39%), Gaps = 21/156 (13%)
Query: 148 GKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGR----GPRRARRSGRGPRRGPEVW 203
GK G+ +P PG + + P G+ GP+ R G P +
Sbjct: 316 GKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGA---LG 372
Query: 204 PRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRS-----EEGSGGLAEVRGGPG-----G 253
PR E+GP G + G G GP P + +G GG+ +G PG G
Sbjct: 373 PRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPG 432
Query: 254 LAEVRGGPGGLAEVIIVKPRAMRGLCS-VGQEAKSG 288
L G PG L EV P MRGL +G + ++G
Sbjct: 433 LQGFPGKPGFLGEV---GPPGMRGLPGPIGPKGEAG 465
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 40.8 bits (94), Expect = 0.001
Identities = 52/177 (29%), Positives = 61/177 (34%), Gaps = 34/177 (19%)
Query: 118 SSWRNRRSATTPNRGRG-EQKRSGQLGDI-------KRGKGG---ERNVPAGPGGSAAAN 166
+SW R TP RGR Q+RS G RG GG E GP S N
Sbjct: 845 ASWLCGRYCPTPPRGRPCPQRRSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPTPSPGPN 904
Query: 167 DLRRSRVSAPVWQRARGRGPRRARRSGRGPRR-------GPEVWPRS------------- 206
R SA +RG + RSG GP+ P PRS
Sbjct: 905 SGASRRSSASQGAGSRGLSEEKTLRSGGGPQGQEEASGVSPSSLPRSSPEAVVREWLDNI 964
Query: 207 -EEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSGGLAEVRGGPGGLAEVRGGPG 262
EE E+ + G RGPEV P + GL E G + G PG
Sbjct: 965 PEEPILMTYELADETTGAAGGGLRGPEVDPGDDHSLEGLGE--PAQAGQQSLEGDPG 1019
>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
Length = 2263
Score = 40.4 bits (93), Expect = 0.002
Identities = 38/129 (29%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 138 RSGQLGDI-KRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRSGRGP 196
R G+ GD +G G+R P G D V + + GP + G
Sbjct: 1480 RKGEKGDEGSQGSPGKRGTPGDRGAKGLRGDPGAPGVDSSI------EGPTGLK--GERG 1531
Query: 197 RRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEV-WPRSEEGSGGLAEVRGGPGGLA 255
R+G WP PG + RR GP+ + P EGS GL + GP G A
Sbjct: 1532 RQGRRGWPGPPGTPGSRRKTAAHGRRGHTGPQGTAGIPGPDGLEGSLGLKGPQ-GPRGEA 1590
Query: 256 EVRGGPGGL 264
V+G GG+
Sbjct: 1591 GVKGEKGGV 1599
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 40.0 bits (92), Expect = 0.002
Identities = 44/152 (28%), Positives = 57/152 (37%), Gaps = 14/152 (9%)
Query: 113 ADTYGSSWRNRRSATTPNRGRGEQKRSGQLGDIKRGKGG-ERNVPAGPGGSA-------A 164
A T +S R ++ +G R+G I+ G GG E+ P P G+A A
Sbjct: 63 AGTKLNSVRQQQLQQQQQQGNKTGSRTGPPASIRGGGGGAEKATPLAPKGAAPGAVQPVA 122
Query: 165 ANDLRRSRVSAPVWQRARGRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSG 224
+ + A + R G R P + E P E G GG GG G
Sbjct: 123 GAEAAPAATLAALGGRRPGPPEEPPRELESVPSKLGEPPPLGEGGGGG---GEGGGAGGG 179
Query: 225 RGPRRGPEVWP---RSEEGSGGLAEVRGGPGG 253
G R G P R G G A+ RGG GG
Sbjct: 180 SGEREGGAPQPPPPRGWRGKGVRAQQRGGSGG 211
Score = 31.2 bits (69), Expect = 1.1
Identities = 32/115 (27%), Positives = 42/115 (36%), Gaps = 11/115 (9%)
Query: 183 GRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPR-------RGPEVWP 235
G G R G P+ P PR G G A+ RGG+ G P + P
Sbjct: 175 GAGGGSGEREGGAPQPPP---PRGWRGKGVRAQQRGGSGGEGASPSPSSSSAGKTPGTGS 231
Query: 236 RSEEGSGGLAEVRGGPGGLAEVRGGPGGLAEVIIVKPRAMRGLCSVGQEAKSGTG 290
R+ GSG GG G + L + + K RA + AK+G G
Sbjct: 232 RN-SGSGVAGGGSGGGGSYWKEGCLQSELIQFHLKKERAAAAAAAAQMHAKNGGG 285
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 39.7 bits (91), Expect = 0.003
Identities = 49/142 (34%), Positives = 56/142 (39%), Gaps = 28/142 (19%)
Query: 133 RGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRRARRS 192
+G SG+ G KRG GE AG G LR S S RG A
Sbjct: 369 QGPPGPSGEEG--KRGPNGE----AGSAGPPGPPGLRGSPGS---------RGLPGA--D 411
Query: 193 GRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGR----GPRRGP----EVWPRSEEGSGGL 244
GR GP R GP G+ G A R G GPR P + P +EG GL
Sbjct: 412 GRAGVMGPP-GSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGL 470
Query: 245 AEVRGGPG--GLAEVRGGPGGL 264
+ G PG G A RG PG +
Sbjct: 471 PGIDGRPGPIGPAGARGEPGNI 492
Score = 37.7 bits (86), Expect = 0.012
Identities = 46/155 (29%), Positives = 55/155 (35%), Gaps = 23/155 (14%)
Query: 129 PNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARGRGPRR 188
PN G G G RG G R +P G + S P R R
Sbjct: 383 PNGEAGSAGPPGPPG--LRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGR 440
Query: 189 ARRSG-RGPRRGP----EVWPRSEEGPGGLAEVRG--------GARRS----GRGPRRGP 231
G GPR P + P +EGP GL + G GAR G +GP
Sbjct: 441 PGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGP 500
Query: 232 EVWP--RSEEGSGGLAEVRGGPG--GLAEVRGGPG 262
P ++G GLA RG PG G +G PG
Sbjct: 501 TGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPG 535
Score = 33.9 bits (76), Expect = 0.18
Identities = 50/183 (27%), Positives = 60/183 (32%), Gaps = 37/183 (20%)
Query: 139 SGQLGDIKRGKGGERNV--------PAGPGGSAAA-NDLRRSRVSAPVWQRARGRGPRRA 189
SG G++ GK GER + PAGP G + + + P+ R P
Sbjct: 561 SGPAGEV--GKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPD 618
Query: 190 RRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSGGLAEVRG 249
G P V GP GL RG A G +G E R E G+ G RG
Sbjct: 619 GNKGE-PGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKG-EPGLRGEIGNPGRDGARG 676
Query: 250 GPG-----------------------GLAEVRGGPGGLAEVIIVKPRAMRGLC-SVGQEA 285
PG G A RG PG EV P G + GQ
Sbjct: 677 APGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPG 736
Query: 286 KSG 288
G
Sbjct: 737 AKG 739
Score = 29.6 bits (65), Expect = 3.3
Identities = 29/91 (31%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 181 ARGRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRG-----GARRSGRGPRRGPE--- 232
A RGPR R P R E P GP G G A+ G+G GP
Sbjct: 35 AGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMG 94
Query: 233 -VWPRSEEGSGGLAEVRGGPGGLAEVRGGPG 262
+ PR G+ G GP G G PG
Sbjct: 95 LMGPRGPPGAAGAP----GPQGFQGPAGEPG 121
>gi|169172231 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 39.7 bits (91), Expect = 0.003
Identities = 47/158 (29%), Positives = 56/158 (35%), Gaps = 24/158 (15%)
Query: 150 GGERNVPAGPGGSAAANDLRRSRVS--------APVWQRARGRGPRRARRSGRGPRRGPE 201
GG + P+ PGG AA +R + A RA G SGR P
Sbjct: 8 GGVPSPPSAPGGGGAALAALSARAAQRGSTTFVAASLHRALTLGASSGEGSGRDNNTPPP 67
Query: 202 VWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSGGLAEVRGGPG--------G 253
PR P +A SG G P + PR+ G G A RG G G
Sbjct: 68 PPPRRRRRPPVVAATHRRRLGSGLGLTTTPGLGPRALCGPRGWAAGRGEAGATGLRLSVG 127
Query: 254 LAEVRGGPGGLAEVIIVKPRAMRGLCSVGQEAKSGTGP 291
A VRG GG + RG V + GTGP
Sbjct: 128 AATVRGWAGG-----YFRGDGGRG---VSESVAVGTGP 157
>gi|169170975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 39.7 bits (91), Expect = 0.003
Identities = 47/158 (29%), Positives = 56/158 (35%), Gaps = 24/158 (15%)
Query: 150 GGERNVPAGPGGSAAANDLRRSRVS--------APVWQRARGRGPRRARRSGRGPRRGPE 201
GG + P+ PGG AA +R + A RA G SGR P
Sbjct: 8 GGVPSPPSAPGGGGAALAALSARAAQRGSTTFVAASLHRALTLGASSGEGSGRDNNTPPP 67
Query: 202 VWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSGGLAEVRGGPG--------G 253
PR P +A SG G P + PR+ G G A RG G G
Sbjct: 68 PPPRRRRRPPVVAATHRRRLGSGLGLTTTPGLGPRALCGPRGWAAGRGEAGATGLRLSVG 127
Query: 254 LAEVRGGPGGLAEVIIVKPRAMRGLCSVGQEAKSGTGP 291
A VRG GG + RG V + GTGP
Sbjct: 128 AATVRGWAGG-----YFRGDGGRG---VSESVAVGTGP 157
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 39.7 bits (91), Expect = 0.003
Identities = 43/141 (30%), Positives = 53/141 (37%), Gaps = 30/141 (21%)
Query: 120 WRNRRSATTPNRGRGEQKRS-------------------GQLGDIKRGKGGERNVPAGPG 160
WR RSA R R Q+R G+ +RG+ R+ PA G
Sbjct: 513 WRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRS-PATRG 571
Query: 161 GSAAANDLR--RSRVSAPVWQRARGRGPRRARRSGRGP-RRG-------PEVWPRSEEGP 210
S + R RSR P +R+R R P R R R P RRG R+
Sbjct: 572 RSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPV 631
Query: 211 GGLAEVRGGARRSGRGPRRGP 231
+ R ARRSGR R P
Sbjct: 632 RRRSRSRSPARRSGRSRSRTP 652
Score = 36.2 bits (82), Expect = 0.035
Identities = 39/121 (32%), Positives = 50/121 (41%), Gaps = 12/121 (9%)
Query: 121 RNRRSATTPNRGRGE-----QKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSA 175
R R + TP R R ++RS +RG+ R PA + RRSR +
Sbjct: 581 RGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRT-PARRRSRTRSPVRRRSRSRS 639
Query: 176 PVWQ--RARGRGP-RRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRS---GRGPRR 229
P + R+R R P RR R R P R R+ G + R ARR R PRR
Sbjct: 640 PARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRR 699
Query: 230 G 230
G
Sbjct: 700 G 700
Score = 32.7 bits (73), Expect = 0.39
Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Query: 123 RRSATTPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRAR 182
RRS + +R + RS +RG+ R G S + RR R + +R R
Sbjct: 642 RRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGR 701
Query: 183 GRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPR 228
R RR GR R P+ RS G +E + +R S R R
Sbjct: 702 SRSRSLVRR-GRSHSRTPQRRGRS----GSSSERKNKSRTSQRRSR 742
Score = 30.8 bits (68), Expect = 1.5
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 121 RNRRSATTPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDL---RRSRVSAP- 176
R RS T+P R + R+ + R + R PA S + L +RSR +P
Sbjct: 1992 RRSRSRTSPVTRRRSRSRTSP---VTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPL 2048
Query: 177 -VWQRARGRGPRRARRSGRGPRRGPEVWPRSEEG 209
+ +R+R R PR AR R P + RS G
Sbjct: 2049 AIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASG 2082
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,644,138
Number of Sequences: 37866
Number of extensions: 881302
Number of successful extensions: 4415
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 561
Number of HSP's that attempted gapping in prelim test: 3383
Number of HSP's gapped (non-prelim): 1281
length of query: 296
length of database: 18,247,518
effective HSP length: 102
effective length of query: 194
effective length of database: 14,385,186
effective search space: 2790726084
effective search space used: 2790726084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.