Guide to the Human Genome
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Name: LOC100292150 Sequence: fasta or formatted (448aa) NCBI GI: 239753353
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         56           6
 C cysteine            1.1          5           2
 D aspartate           2.0          9           1
 E glutamate           5.8         26           2
 F phenylalanine       2.2         10           1
 G glycine            16.3         73           4
 H histidine           1.8          8           1
 I isoleucine          2.2         10           1
 K lysine              2.5         11           2
 L leucine            10.7         48           3
 M methionine          0.9          4           1
 N asparagine          1.6          7           1
 P proline             6.9         31           4
 Q glutamine           3.3         15           2
 R arginine           12.1         54           3
 S serine              6.5         29           1
 T threonine           2.5         11           1
 V valine              8.0         36           4
 W tryptophan          0.9          4           1
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290302          1.000   PREDICTED: hypothetical protein XP_002346480 
LOC100287337          1.000   PREDICTED: hypothetical protein XP_002342320 
COL3A1                0.024   collagen type III alpha 1 preproprotein 
LOC100292370          0.022   PREDICTED: hypothetical protein 
LOC338758             0.022   PREDICTED: hypothetical protein 
LOC338758             0.022   PREDICTED: hypothetical protein 
LOC338758             0.022   PREDICTED: hypothetical protein 
LOC100291147          0.020   PREDICTED: hypothetical protein XP_002347883 
LOC100289560          0.020   PREDICTED: hypothetical protein XP_002344188 
DACT3                 0.020   thymus expressed gene 3-like 
LOC100293371          0.020   PREDICTED: hypothetical protein 
LOC100131851          0.019   PREDICTED: hypothetical protein 
LOC100130751          0.019   PREDICTED: hypothetical protein 
LOC100291624          0.019   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.019   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.019   PREDICTED: hypothetical protein XP_002342583 
LOC100290946          0.017   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.017   PREDICTED: hypothetical protein XP_002344246 
SFRS16                0.017   splicing factor, arginine/serine-rich 16 
ELN                   0.017   elastin isoform d precursor 
ELN                   0.017   elastin isoform c precursor 
ELN                   0.017   elastin isoform b precursor 
LOC100291533          0.017   PREDICTED: hypothetical protein XP_002347080 
LOC100290274          0.017   PREDICTED: hypothetical protein XP_002346984 
LOC100288002          0.017   PREDICTED: hypothetical protein XP_002342946 
LOC100288645          0.017   PREDICTED: hypothetical protein XP_002342846 
LOC100131851          0.017   PREDICTED: hypothetical protein 
PAK4                  0.017   p21-activated kinase 4 isoform 1 
PAK4                  0.017   p21-activated kinase 4 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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