Guide to the Human Genome
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Name: LOC100128370 Sequence: fasta or formatted (237aa) NCBI GI: 169172231
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {237aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         29           2
 C cysteine            1.3          3           1
 D aspartate           1.3          3           1
 E glutamate           3.4          8           2
 F phenylalanine       2.5          6           1
 G glycine            15.6         37           4
 H histidine           1.7          4           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine            11.0         26           3
 M methionine          0.4          1           1
 N asparagine          2.1          5           2
 P proline            15.2         36           6
 Q glutamine           0.8          2           1
 R arginine           11.4         27           5
 S serine              8.9         21           2
 T threonine           5.5         13           3
 V valine              5.1         12           2
 W tryptophan          1.3          3           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128370          1.000   PREDICTED: hypothetical protein 
LOC100291634          0.062   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.062   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.062   PREDICTED: hypothetical protein 
LOC729370             0.056   PREDICTED: hypothetical protein 
C9orf75               0.045   hypothetical protein LOC286262 isoform 2 
C9orf75               0.045   hypothetical protein LOC286262 isoform 1 
RANBP9                0.043   RAN binding protein 9 
RUSC2                 0.043   RUN and SH3 domain containing 2 
RUSC2                 0.043   RUN and SH3 domain containing 2 
CTAG1B                0.043   cancer/testis antigen 1B 
LOC338758             0.043   PREDICTED: hypothetical protein 
LOC338758             0.043   PREDICTED: hypothetical protein 
LOC100287450          0.043   PREDICTED: hypothetical protein XP_002343550 
LOC100287417          0.043   PREDICTED: hypothetical protein XP_002343549 
LOC100287374          0.043   PREDICTED: hypothetical protein XP_002343548 
LOC338758             0.043   PREDICTED: hypothetical protein 
RBM15B                0.043   RNA binding motif protein 15B 
CTAG1A                0.043   cancer/testis antigen 1A 
LOC100130360          0.041   PREDICTED: hypothetical protein 
COL1A1                0.039   alpha 1 type I collagen preproprotein 
LOC100293055          0.039   PREDICTED: similar to COL22A1 protein 
COL22A1               0.039   collagen, type XXII, alpha 1 
DIAPH1                0.036   diaphanous 1 isoform 2 
DIAPH1                0.036   diaphanous 1 isoform 1 
ITPKB                 0.036   1D-myo-inositol-trisphosphate 3-kinase B 
LOC100293776          0.036   PREDICTED: hypothetical protein 
KIAA1543              0.036   NEZHA isoform 2 
KIAA1543              0.036   NEZHA isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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