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Search of human proteins with 239745936
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745936 PREDICTED: hypothetical protein XP_002343581 [Homo
sapiens]
(161 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756953 PREDICTED: hypothetical protein XP_002345113 [Homo ... 341 2e-94
gi|239751432 PREDICTED: hypothetical protein XP_002347870 [Homo ... 341 2e-94
gi|239745936 PREDICTED: hypothetical protein XP_002343581 [Homo ... 341 2e-94
gi|13994372 keratin associated protein 17-1 [Homo sapiens] 37 0.010
gi|169171347 PREDICTED: hypothetical protein [Homo sapiens] 32 0.18
gi|169172209 PREDICTED: hypothetical protein [Homo sapiens] 32 0.18
gi|169170953 PREDICTED: hypothetical protein [Homo sapiens] 32 0.18
gi|239508753 PREDICTED: hypothetical protein [Homo sapiens] 32 0.18
gi|6912602 ADP-ribosylation factor interacting protein 2 [Homo s... 32 0.18
gi|54400749 keratin associated protein 5-1 [Homo sapiens] 32 0.31
gi|30387648 late cornified envelope 1D [Homo sapiens] 30 0.69
gi|53292629 keratin associated protein 5-11 [Homo sapiens] 30 0.69
gi|60593040 keratin associated protein 5-10 [Homo sapiens] 30 1.2
gi|123173777 keratin associated protein 5-8 [Homo sapiens] 30 1.2
gi|60099478 keratin associated protein 5-6 [Homo sapiens] 30 1.2
gi|60593038 keratin associated protein 5-4 [Homo sapiens] 30 1.2
gi|239756124 PREDICTED: hypothetical protein [Homo sapiens] 29 1.5
gi|30387654 late cornified envelope 1A [Homo sapiens] 29 2.0
gi|239752912 PREDICTED: hypothetical protein [Homo sapiens] 28 2.6
gi|30387650 late cornified envelope 1E [Homo sapiens] 28 2.6
gi|30387656 late cornified envelope 1B [Homo sapiens] 28 2.6
gi|30387652 late cornified envelope 1C [Homo sapiens] 28 2.6
gi|60279697 keratin associated protein 5-7 [Homo sapiens] 28 2.6
gi|153945796 keratin associated protein 6-3 [Homo sapiens] 28 2.6
gi|22749303 hypothetical protein LOC196477 [Homo sapiens] 28 2.6
gi|229577180 MPN domain containing isoform 2 [Homo sapiens] 28 3.4
gi|31542699 MPN domain containing isoform 1 [Homo sapiens] 28 3.4
gi|26051237 nucleoporin 54kDa [Homo sapiens] 28 3.4
gi|122891874 keratin associated protein 5-5 [Homo sapiens] 28 3.4
gi|60593036 keratin associated protein 5-3 [Homo sapiens] 28 3.4
>gi|239756953 PREDICTED: hypothetical protein XP_002345113 [Homo
sapiens]
Length = 161
Score = 341 bits (874), Expect = 2e-94
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 MELMDVFESVMDFGHEQETVLGHYFEAETVLQLGAWMTVRGWVVLQKGHGMKQLFGSELQ 60
MELMDVFESVMDFGHEQETVLGHYFEAETVLQLGAWMTVRGWVVLQKGHGMKQLFGSELQ
Sbjct: 1 MELMDVFESVMDFGHEQETVLGHYFEAETVLQLGAWMTVRGWVVLQKGHGMKQLFGSELQ 60
Query: 61 AESELQAELGTGAGFGAGAELKAEQSVAGLLLDPHLMTELVAGFCLDVPASGVTVYSAFV 120
AESELQAELGTGAGFGAGAELKAEQSVAGLLLDPHLMTELVAGFCLDVPASGVTVYSAFV
Sbjct: 61 AESELQAELGTGAGFGAGAELKAEQSVAGLLLDPHLMTELVAGFCLDVPASGVTVYSAFV 120
Query: 121 HLSTCCCRGNSGGGGAGCGGCCCQWGKEESLNSTIWHCSLH 161
HLSTCCCRGNSGGGGAGCGGCCCQWGKEESLNSTIWHCSLH
Sbjct: 121 HLSTCCCRGNSGGGGAGCGGCCCQWGKEESLNSTIWHCSLH 161
>gi|239751432 PREDICTED: hypothetical protein XP_002347870 [Homo
sapiens]
Length = 161
Score = 341 bits (874), Expect = 2e-94
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 MELMDVFESVMDFGHEQETVLGHYFEAETVLQLGAWMTVRGWVVLQKGHGMKQLFGSELQ 60
MELMDVFESVMDFGHEQETVLGHYFEAETVLQLGAWMTVRGWVVLQKGHGMKQLFGSELQ
Sbjct: 1 MELMDVFESVMDFGHEQETVLGHYFEAETVLQLGAWMTVRGWVVLQKGHGMKQLFGSELQ 60
Query: 61 AESELQAELGTGAGFGAGAELKAEQSVAGLLLDPHLMTELVAGFCLDVPASGVTVYSAFV 120
AESELQAELGTGAGFGAGAELKAEQSVAGLLLDPHLMTELVAGFCLDVPASGVTVYSAFV
Sbjct: 61 AESELQAELGTGAGFGAGAELKAEQSVAGLLLDPHLMTELVAGFCLDVPASGVTVYSAFV 120
Query: 121 HLSTCCCRGNSGGGGAGCGGCCCQWGKEESLNSTIWHCSLH 161
HLSTCCCRGNSGGGGAGCGGCCCQWGKEESLNSTIWHCSLH
Sbjct: 121 HLSTCCCRGNSGGGGAGCGGCCCQWGKEESLNSTIWHCSLH 161
>gi|239745936 PREDICTED: hypothetical protein XP_002343581 [Homo
sapiens]
Length = 161
Score = 341 bits (874), Expect = 2e-94
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 MELMDVFESVMDFGHEQETVLGHYFEAETVLQLGAWMTVRGWVVLQKGHGMKQLFGSELQ 60
MELMDVFESVMDFGHEQETVLGHYFEAETVLQLGAWMTVRGWVVLQKGHGMKQLFGSELQ
Sbjct: 1 MELMDVFESVMDFGHEQETVLGHYFEAETVLQLGAWMTVRGWVVLQKGHGMKQLFGSELQ 60
Query: 61 AESELQAELGTGAGFGAGAELKAEQSVAGLLLDPHLMTELVAGFCLDVPASGVTVYSAFV 120
AESELQAELGTGAGFGAGAELKAEQSVAGLLLDPHLMTELVAGFCLDVPASGVTVYSAFV
Sbjct: 61 AESELQAELGTGAGFGAGAELKAEQSVAGLLLDPHLMTELVAGFCLDVPASGVTVYSAFV 120
Query: 121 HLSTCCCRGNSGGGGAGCGGCCCQWGKEESLNSTIWHCSLH 161
HLSTCCCRGNSGGGGAGCGGCCCQWGKEESLNSTIWHCSLH
Sbjct: 121 HLSTCCCRGNSGGGGAGCGGCCCQWGKEESLNSTIWHCSLH 161
>gi|13994372 keratin associated protein 17-1 [Homo sapiens]
Length = 105
Score = 36.6 bits (83), Expect = 0.010
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 124 TCCCRGNSGGGGAGCGGCCC 143
+CC G SG GG+GCGG CC
Sbjct: 34 SCCGCGGSGCGGSGCGGSCC 53
Score = 27.7 bits (60), Expect = 4.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 126 CCRGNSGGGGAGCGGCCC 143
CC G GG+GCGG C
Sbjct: 31 CCGSCCGCGGSGCGGSGC 48
Score = 27.7 bits (60), Expect = 4.5
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Query: 123 STCC------CRGNSGGGGAGCGGCCC 143
S+CC C G G GG CG CC
Sbjct: 55 SSCCGSGCGGCGGCGGCGGGCCGSSCC 81
Score = 26.6 bits (57), Expect = 9.9
Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 6/26 (23%)
Query: 124 TCCCRGNSGGGGAGCGGC------CC 143
+CC G G GCGGC CC
Sbjct: 51 SCCGSSCCGSGCGGCGGCGGCGGGCC 76
>gi|169171347 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1128
Score = 32.3 bits (72), Expect = 0.18
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 76 GAGAELKAEQSVAGLLLDPHLMTELVAGFCLDVPASGVTVYSAFVHLSTCCCRGNSGGGG 135
GAGA + QSV G P + + G P G+ ++ V + G GGGG
Sbjct: 465 GAGAAGRGAQSVRG----PGVERRVAEGAQQFGPRVGLRQHAERVERAQRAAEGRGGGGG 520
Query: 136 AGCG 139
GCG
Sbjct: 521 GGCG 524
>gi|169172209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 32.3 bits (72), Expect = 0.18
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 76 GAGAELKAEQSVAGLLLDPHLMTELVAGFCLDVPASGVTVYSAFVHLSTCCCRGNSGGGG 135
GAGA + QSV G P + + G P G+ ++ V + G GGGG
Sbjct: 138 GAGAAGRGAQSVRG----PGVERRVAEGAQQFGPRVGLRQHAERVERAQRAAEGRGGGGG 193
Query: 136 AGCG 139
GCG
Sbjct: 194 GGCG 197
>gi|169170953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 32.3 bits (72), Expect = 0.18
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 76 GAGAELKAEQSVAGLLLDPHLMTELVAGFCLDVPASGVTVYSAFVHLSTCCCRGNSGGGG 135
GAGA + QSV G P + + G P G+ ++ V + G GGGG
Sbjct: 138 GAGAAGRGAQSVRG----PGVERRVAEGAQQFGPRVGLRQHAERVERAQRAAEGRGGGGG 193
Query: 136 AGCG 139
GCG
Sbjct: 194 GGCG 197
>gi|239508753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 32.3 bits (72), Expect = 0.18
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 76 GAGAELKAEQSVAGLLLDPHLMTELVAGFCLDVPASGVTVYSAFVHLSTCCCRGNSGGGG 135
GAGA + QSV G P + + G P G+ ++ V + G GGGG
Sbjct: 138 GAGAAGRGAQSVRG----PGVERRVAEGAQQFGPRVGLRQHAERVERAQRAAEGRGGGGG 193
Query: 136 AGCG 139
GCG
Sbjct: 194 GGCG 197
>gi|6912602 ADP-ribosylation factor interacting protein 2 [Homo
sapiens]
Length = 341
Score = 32.3 bits (72), Expect = 0.18
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 28 ETVLQLGAWMTVRGWVVLQKGHGMKQLFGSELQAESELQAELGTGA 73
E+VLQLG +T + +LQ H + F Q ELQ E G A
Sbjct: 141 ESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNA 186
>gi|54400749 keratin associated protein 5-1 [Homo sapiens]
Length = 278
Score = 31.6 bits (70), Expect = 0.31
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 3/20 (15%)
Query: 127 CRGNSGGGGAGCGGC---CC 143
C G+ GG G+GCGGC CC
Sbjct: 112 CGGSKGGCGSGCGGCGSSCC 131
Score = 30.0 bits (66), Expect = 0.90
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 127 CRGNSGGGGAGCGGC 141
C G+ GG G+GCGGC
Sbjct: 190 CGGSKGGCGSGCGGC 204
Score = 28.1 bits (61), Expect = 3.4
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 5/22 (22%)
Query: 125 CC-----CRGNSGGGGAGCGGC 141
CC C + GG G+GCGGC
Sbjct: 3 CCGCSGGCGSSCGGCGSGCGGC 24
Score = 26.9 bits (58), Expect = 7.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 127 CRGNSGGGGAGCGGC 141
C GG G+GCGGC
Sbjct: 17 CGSGCGGCGSGCGGC 31
Score = 26.6 bits (57), Expect = 9.9
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 9/27 (33%)
Query: 127 CRGNSGGGGAGCGG---------CCCQ 144
C GG G+GCGG CCC+
Sbjct: 24 CGSGCGGCGSGCGGSGSSCCVPVCCCK 50
Score = 26.6 bits (57), Expect = 9.9
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 111 SGVTVYSAFVHLSTC-CCRGNSGGGGAGCGGCCC 143
SG V S+C C G+ GG G+ C C C
Sbjct: 206 SGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSC 239
>gi|30387648 late cornified envelope 1D [Homo sapiens]
Length = 114
Score = 30.4 bits (67), Expect = 0.69
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 122 LSTCC------CRGNSGGGGAG--CGGCCCQWG 146
+S+CC C G+S GGG G GGCC G
Sbjct: 36 VSSCCSVSSGGCCGSSSGGGCGSNSGGCCSSGG 68
>gi|53292629 keratin associated protein 5-11 [Homo sapiens]
Length = 156
Score = 30.4 bits (67), Expect = 0.69
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
Query: 127 CRGNSGGGGAGCGGC---CC 143
C SGG G+GCGGC CC
Sbjct: 17 CGSGSGGCGSGCGGCGSSCC 36
Score = 29.6 bits (65), Expect = 1.2
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 127 CRGNSGGGGAGCGGC 141
C G SGG G+GCGGC
Sbjct: 3 CCGCSGGCGSGCGGC 17
>gi|60593040 keratin associated protein 5-10 [Homo sapiens]
Length = 202
Score = 29.6 bits (65), Expect = 1.2
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 127 CRGNSGGGGAGCGGC 141
C G SGG G+GCGGC
Sbjct: 3 CCGCSGGCGSGCGGC 17
Score = 28.5 bits (62), Expect = 2.6
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Query: 127 CRGNSGGGGAGCGGC---CC 143
C GG G+GCGGC CC
Sbjct: 24 CGSGCGGYGSGCGGCGSSCC 43
Score = 27.7 bits (60), Expect = 4.5
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 5/22 (22%)
Query: 125 CC-----CRGNSGGGGAGCGGC 141
CC C GG G+GCGGC
Sbjct: 3 CCGCSGGCGSGCGGCGSGCGGC 24
>gi|123173777 keratin associated protein 5-8 [Homo sapiens]
Length = 187
Score = 29.6 bits (65), Expect = 1.2
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 127 CRGNSGGGGAGCGGC 141
C G SGG G+GCGGC
Sbjct: 3 CCGCSGGCGSGCGGC 17
Score = 29.3 bits (64), Expect = 1.5
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 8/27 (29%)
Query: 125 CC-----CRGNSGGGGAGCGGC---CC 143
CC C GG G+GCGGC CC
Sbjct: 3 CCGCSGGCGSGCGGCGSGCGGCGSSCC 29
>gi|60099478 keratin associated protein 5-6 [Homo sapiens]
Length = 129
Score = 29.6 bits (65), Expect = 1.2
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 127 CRGNSGGGGAGCGGC 141
C G SGG G+GCGGC
Sbjct: 3 CCGCSGGCGSGCGGC 17
Score = 29.3 bits (64), Expect = 1.5
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 8/27 (29%)
Query: 125 CC-----CRGNSGGGGAGCGGC---CC 143
CC C GG G+GCGGC CC
Sbjct: 3 CCGCSGGCGSGCGGCGSGCGGCGSSCC 29
Score = 28.9 bits (63), Expect = 2.0
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 105 CLDVPASGVTVYSAFVHLSTCC--CRGNSGGGGA------GCGGCCC 143
C VPA T + CC C G+ GG G+ GCG C C
Sbjct: 39 CCCVPACSCTSCGSCGGSKGCCGSCGGSKGGCGSCGGSKGGCGSCGC 85
>gi|60593038 keratin associated protein 5-4 [Homo sapiens]
Length = 288
Score = 29.6 bits (65), Expect = 1.2
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 127 CRGNSGGGGAGCGGC 141
C G SGG G+GCGGC
Sbjct: 3 CCGCSGGCGSGCGGC 17
Score = 28.5 bits (62), Expect = 2.6
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Query: 127 CRGNSGGGGAGCGGC---CC 143
C GG G+GCGGC CC
Sbjct: 31 CGSGCGGCGSGCGGCGSSCC 50
Score = 27.7 bits (60), Expect = 4.5
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 5/22 (22%)
Query: 125 CC-----CRGNSGGGGAGCGGC 141
CC C GG G+GCGGC
Sbjct: 3 CCGCSGGCGSGCGGCGSGCGGC 24
Score = 26.9 bits (58), Expect = 7.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 127 CRGNSGGGGAGCGGC 141
C GG G+GCGGC
Sbjct: 17 CGSGCGGCGSGCGGC 31
Score = 26.9 bits (58), Expect = 7.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 127 CRGNSGGGGAGCGGC 141
C GG G+GCGGC
Sbjct: 24 CGSGCGGCGSGCGGC 38
>gi|239756124 PREDICTED: hypothetical protein [Homo sapiens]
Length = 348
Score = 29.3 bits (64), Expect = 1.5
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 128 RGNSGGGGAGCGG---CCCQW 145
RG+ GGG CGG CC+W
Sbjct: 184 RGSGRGGGCNCGGGSCSCCRW 204
>gi|30387654 late cornified envelope 1A [Homo sapiens]
Length = 110
Score = 28.9 bits (63), Expect = 2.0
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 8/29 (27%)
Query: 122 LSTCC------CRGNSGGGG--AGCGGCC 142
+S+CC C G+S GGG +G GGCC
Sbjct: 40 VSSCCSVSSGGCCGSSSGGGCSSGGGGCC 68
>gi|239752912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 118
Score = 28.5 bits (62), Expect = 2.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 122 LSTCC------CRGNSGGG--GAGCGGCCCQWG 146
+S+CC C G+S GG G+ GGCC G
Sbjct: 40 VSSCCSVSSGGCCGSSSGGSCGSSSGGCCSSGG 72
>gi|30387650 late cornified envelope 1E [Homo sapiens]
Length = 118
Score = 28.5 bits (62), Expect = 2.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 122 LSTCC------CRGNSGGG--GAGCGGCCCQWG 146
+S+CC C G+S GG G+ GGCC G
Sbjct: 40 VSSCCSVSSGGCCGSSSGGSCGSSSGGCCSSGG 72
>gi|30387656 late cornified envelope 1B [Homo sapiens]
Length = 118
Score = 28.5 bits (62), Expect = 2.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 122 LSTCC------CRGNSGGG--GAGCGGCCCQWG 146
+S+CC C G+S GG G+ GGCC G
Sbjct: 40 VSSCCSVSSGGCCGSSSGGSCGSSSGGCCSSGG 72
>gi|30387652 late cornified envelope 1C [Homo sapiens]
Length = 118
Score = 28.5 bits (62), Expect = 2.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 122 LSTCC------CRGNSGGG--GAGCGGCCCQWG 146
+S+CC C G+S GG G+ GGCC G
Sbjct: 40 VSSCCSVSSGGCCGSSSGGSCGSSSGGCCSSGG 72
>gi|60279697 keratin associated protein 5-7 [Homo sapiens]
Length = 165
Score = 28.5 bits (62), Expect = 2.6
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Query: 127 CRGNSGGGGAGCGGC---CC 143
C GG G+GCGGC CC
Sbjct: 17 CGSGCGGCGSGCGGCGSSCC 36
Score = 27.7 bits (60), Expect = 4.5
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 5/22 (22%)
Query: 125 CC-----CRGNSGGGGAGCGGC 141
CC C GG G+GCGGC
Sbjct: 3 CCGCSEGCGSGCGGCGSGCGGC 24
>gi|153945796 keratin associated protein 6-3 [Homo sapiens]
Length = 110
Score = 28.5 bits (62), Expect = 2.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 125 CCCRGNSGGGGAGCGGCCCQWG 146
CC G G G GCG CC +G
Sbjct: 24 CCGYGGLGCGYGGCGYGCCGYG 45
>gi|22749303 hypothetical protein LOC196477 [Homo sapiens]
Length = 406
Score = 28.5 bits (62), Expect = 2.6
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 130 NSGGGGAGCGGCCCQWGKEESLNS 153
N GGGG GGC C W SL+S
Sbjct: 13 NLGGGGG--GGCGCGWAHSASLSS 34
>gi|229577180 MPN domain containing isoform 2 [Homo sapiens]
Length = 451
Score = 28.1 bits (61), Expect = 3.4
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 129 GNSGGGGAGCGGC 141
G GGGGAG GGC
Sbjct: 51 GGGGGGGAGAGGC 63
>gi|31542699 MPN domain containing isoform 1 [Homo sapiens]
Length = 471
Score = 28.1 bits (61), Expect = 3.4
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 129 GNSGGGGAGCGGC 141
G GGGGAG GGC
Sbjct: 51 GGGGGGGAGAGGC 63
>gi|26051237 nucleoporin 54kDa [Homo sapiens]
Length = 507
Score = 28.1 bits (61), Expect = 3.4
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 47 KGHGMKQLFGSELQAESELQAELGTGAGFGA-GAELKAEQSVAGLLLDP 94
KG G FG+ + L LGTG GFG + + + ++ GL P
Sbjct: 59 KGFGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFSQP 107
>gi|122891874 keratin associated protein 5-5 [Homo sapiens]
Length = 237
Score = 28.1 bits (61), Expect = 3.4
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 5/22 (22%)
Query: 125 CC-----CRGNSGGGGAGCGGC 141
CC C GG G+GCGGC
Sbjct: 3 CCGCSGGCGSGCGGRGSGCGGC 24
Score = 27.7 bits (60), Expect = 4.5
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 123 STCCCRGNSGGGGAGCGGC---CC 143
S C G G G AGCGGC CC
Sbjct: 40 SGCGGCGGCGSGCAGCGGCGSGCC 63
Score = 26.9 bits (58), Expect = 7.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 127 CRGNSGGGGAGCGGC 141
C GG G+GCGGC
Sbjct: 24 CGSGCGGCGSGCGGC 38
Score = 26.9 bits (58), Expect = 7.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 127 CRGNSGGGGAGCGGC 141
C GG G+GCGGC
Sbjct: 31 CGSGCGGCGSGCGGC 45
Score = 26.6 bits (57), Expect = 9.9
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 123 STCCCRGNSGGG-GAGCGGC 141
S C RG+ GG G+GCGGC
Sbjct: 12 SGCGGRGSGCGGCGSGCGGC 31
>gi|60593036 keratin associated protein 5-3 [Homo sapiens]
Length = 238
Score = 28.1 bits (61), Expect = 3.4
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 127 CRGNSGGGGAGCGGC 141
C G SGG G+ CGGC
Sbjct: 3 CSGCSGGCGSSCGGC 17
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,464,007
Number of Sequences: 37866
Number of extensions: 294938
Number of successful extensions: 2087
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1739
Number of HSP's gapped (non-prelim): 303
length of query: 161
length of database: 18,247,518
effective HSP length: 94
effective length of query: 67
effective length of database: 14,688,114
effective search space: 984103638
effective search space used: 984103638
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.