Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ARFIP2 Sequence: fasta or formatted (341aa) NCBI GI: 6912602
Description:

ADP-ribosylation factor interacting protein 2

Referenced in:

ADP-Ribosylation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         24           2
 C cysteine            0.6          2           1
 D aspartate           4.7         16           2
 E glutamate           9.1         31           2
 F phenylalanine       3.2         11           2
 G glycine             9.4         32           2
 H histidine           2.3          8           1
 I isoleucine          3.8         13           1
 K lysine              6.7         23           2
 L leucine            12.6         43           3
 M methionine          1.8          6           1
 N asparagine          3.5         12           1
 P proline             3.5         12           2
 Q glutamine           6.5         22           2
 R arginine            5.0         17           1
 S serine              5.9         20           2
 T threonine           6.7         23           2
 V valine              4.1         14           1
 W tryptophan          0.6          2           1
 Y tyrosine            2.9         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ADP-ribosylation factor interacting protein 2 
ARFIP1                0.596   ADP-ribosylation factor interacting protein 1 isofor...
ARFIP1                0.596   ADP-ribosylation factor interacting protein 1 isoform...
ARFIP1                0.573   ADP-ribosylation factor interacting protein 1 isofor...
PICK1                 0.058   protein interacting with C kinase 1 
PICK1                 0.058   protein interacting with C kinase 1 
PICK1                 0.058   protein interacting with C kinase 1 
ICA1L                 0.029   islet cell autoantigen 1,69kDa-like isoform 1 
ICA1                  0.021   islet cell autoantigen 1 
ICA1                  0.021   islet cell autoantigen 1 
ICA1                  0.021   islet cell autoantigen 1 
TACC2                 0.018   transforming, acidic coiled-coil containing protein...
GOLIM4                0.017   golgi integral membrane protein 4 
LOC100293149          0.017   PREDICTED: similar to protein phosphatase 1, regula...
PPP1R3F               0.017   protein phosphatase 1, regulatory (inhibitor) subuni...
PBRM1                 0.017   polybromo 1 isoform 2 
CCDC88A               0.015   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.015   coiled-coil domain containing 88A isoform 1 
SNIP                  0.015   SNAP25-interacting protein 
TBC1D4                0.014   TBC1 domain family, member 4 
SMC3                  0.012   structural maintenance of chromosomes 3 
EEA1                  0.012   early endosome antigen 1, 162kD 
PBRM1                 0.012   polybromo 1 isoform 1 
PBRM1                 0.012   polybromo 1 isoform 4 
LOC100292061          0.011   PREDICTED: hypothetical protein XP_002345113 
LOC100289864          0.011   PREDICTED: hypothetical protein XP_002347870 
LOC100289624          0.011   PREDICTED: hypothetical protein XP_002343581 
ECSCR                 0.011   endothelial cell-specific chemotaxis regulator [Hom...
KRT25                 0.009   keratin 25 
NR2F1                 0.009   nuclear receptor subfamily 2, group F, member 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press