Guide to the Human Genome
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Name: LOC100289864 Sequence: fasta or formatted (161aa) NCBI GI: 239751432
Description:

PREDICTED: hypothetical protein XP_002347870

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         13           1
 C cysteine            5.6          9           3
 D aspartate           2.5          4           1
 E glutamate           9.3         15           2
 F phenylalanine       4.3          7           1
 G glycine            14.9         24           4
 H histidine           4.3          7           1
 I isoleucine          0.6          1           1
 K lysine              2.5          4           1
 L leucine            11.8         19           3
 M methionine          3.7          6           1
 N asparagine          1.2          2           1
 P proline             1.2          2           1
 Q glutamine           5.0          8           1
 R arginine            1.2          2           1
 S serine              6.8         11           1
 T threonine           5.0          8           1
 V valine              8.1         13           2
 W tryptophan          2.5          4           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347870 
LOC100292061          1.000   PREDICTED: hypothetical protein XP_002345113 
LOC100289624          1.000   PREDICTED: hypothetical protein XP_002343581 
KRTAP17-1             0.038   keratin associated protein 17-1 
LOC100129463          0.022   PREDICTED: hypothetical protein 
LOC100129463          0.022   PREDICTED: hypothetical protein 
LOC100129463          0.022   PREDICTED: hypothetical protein 
LOC100129463          0.022   PREDICTED: hypothetical protein 
ARFIP2                0.022   ADP-ribosylation factor interacting protein 2 
KRTAP5-1              0.022   keratin associated protein 5-1 
LCE1D                 0.016   late cornified envelope 1D 
KRTAP5-11             0.016   keratin associated protein 5-11 
KRTAP5-10             0.016   keratin associated protein 5-10 
KRTAP5-8              0.016   keratin associated protein 5-8 
KRTAP5-6              0.016   keratin associated protein 5-6 
KRTAP5-4              0.016   keratin associated protein 5-4 
LOC100292541          0.013   PREDICTED: hypothetical protein 
LCE1A                 0.013   late cornified envelope 1A 
LOC100292632          0.009   PREDICTED: hypothetical protein 
LCE1E                 0.009   late cornified envelope 1E 
LCE1B                 0.009   late cornified envelope 1B 
LCE1C                 0.009   late cornified envelope 1C 
KRTAP5-7              0.009   keratin associated protein 5-7 
KRTAP6-3              0.009   keratin associated protein 6-3 
C12orf12              0.009   hypothetical protein LOC196477 
MPND                  0.009   MPN domain containing isoform 2 
MPND                  0.009   MPN domain containing isoform 1 
NUP54                 0.009   nucleoporin 54kDa 
KRTAP5-5              0.009   keratin associated protein 5-5 
KRTAP5-3              0.009   keratin associated protein 5-3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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