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Search of human proteins with 239745680
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745680 PREDICTED: hypothetical protein XP_002343542 [Homo
sapiens]
(141 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756697 PREDICTED: hypothetical protein [Homo sapiens] 276 3e-75
gi|239751192 PREDICTED: hypothetical protein XP_002347744 [Homo ... 276 3e-75
gi|239745680 PREDICTED: hypothetical protein XP_002343542 [Homo ... 276 3e-75
gi|19923084 polycystin-1L1 [Homo sapiens] 31 0.30
gi|4507229 aldehyde dehydrogenase 5A1 isoform 2 precursor [Homo ... 30 0.50
gi|25777721 aldehyde dehydrogenase 5A1 isoform 1 precursor [Homo... 30 0.50
gi|239756691 PREDICTED: hypothetical protein [Homo sapiens] 30 0.66
gi|239751188 PREDICTED: hypothetical protein XP_002347742 [Homo ... 30 0.66
gi|239745676 PREDICTED: hypothetical protein XP_002343540 [Homo ... 30 0.66
gi|226530908 protein-L-isoaspartate (D-aspartate) O-methyltransf... 30 0.66
gi|15529984 armadillo repeat containing 6 [Homo sapiens] 30 0.66
gi|188536004 zinc finger protein 469 [Homo sapiens] 29 1.1
gi|23308693 zinc finger and BTB domain containing 9 [Homo sapiens] 29 1.1
gi|84993742 tripartite motif-containing 71 [Homo sapiens] 29 1.5
gi|90193619 nuclear matrix transcription factor 4 isoform c [Hom... 28 1.9
gi|90193617 nuclear matrix transcription factor 4 isoform b [Hom... 28 1.9
gi|90193615 nuclear matrix transcription factor 4 isoform b [Hom... 28 1.9
gi|90193613 nuclear matrix transcription factor 4 isoform a [Hom... 28 1.9
gi|90193611 nuclear matrix transcription factor 4 isoform a [Hom... 28 1.9
gi|36054194 nuclear matrix transcription factor 4 isoform a [Hom... 28 1.9
gi|209180475 nuclear matrix transcription factor 4 isoform d [Ho... 28 1.9
gi|4507431 thyrotrophic embryonic factor isoform 1 [Homo sapiens] 28 1.9
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 28 1.9
gi|156564407 phospholipase D2 [Homo sapiens] 28 2.5
gi|46487911 zinc finger protein 406 isoform ZFAT-1 [Homo sapiens] 28 2.5
gi|110832843 TBP-associated factor 4 [Homo sapiens] 28 3.3
gi|25914749 ATP-binding cassette, sub-family C, member 10 [Homo ... 28 3.3
gi|157694487 CMT1A duplicated region transcript 1 [Homo sapiens] 28 3.3
gi|29826279 tubby isoform b [Homo sapiens] 27 4.3
gi|19923167 tubby isoform a [Homo sapiens] 27 4.3
>gi|239756697 PREDICTED: hypothetical protein [Homo sapiens]
Length = 141
Score = 276 bits (707), Expect = 3e-75
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MPGAAPGPGPAHLRARGHVAGVSASFLLLLCLMHAALSSVALQDPEQVERGVEVVEGGGG 60
MPGAAPGPGPAHLRARGHVAGVSASFLLLLCLMHAALSSVALQDPEQVERGVEVVEGGGG
Sbjct: 1 MPGAAPGPGPAHLRARGHVAGVSASFLLLLCLMHAALSSVALQDPEQVERGVEVVEGGGG 60
Query: 61 VGLAASLLHQPLHLGVQGPCALTQVVAVAPGTAQVVPVDARRLVQKVLLLFGAAAAQAAP 120
VGLAASLLHQPLHLGVQGPCALTQVVAVAPGTAQVVPVDARRLVQKVLLLFGAAAAQAAP
Sbjct: 61 VGLAASLLHQPLHLGVQGPCALTQVVAVAPGTAQVVPVDARRLVQKVLLLFGAAAAQAAP 120
Query: 121 DDAQQRLQQLQDQGILGLLGH 141
DDAQQRLQQLQDQGILGLLGH
Sbjct: 121 DDAQQRLQQLQDQGILGLLGH 141
>gi|239751192 PREDICTED: hypothetical protein XP_002347744 [Homo
sapiens]
Length = 141
Score = 276 bits (707), Expect = 3e-75
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MPGAAPGPGPAHLRARGHVAGVSASFLLLLCLMHAALSSVALQDPEQVERGVEVVEGGGG 60
MPGAAPGPGPAHLRARGHVAGVSASFLLLLCLMHAALSSVALQDPEQVERGVEVVEGGGG
Sbjct: 1 MPGAAPGPGPAHLRARGHVAGVSASFLLLLCLMHAALSSVALQDPEQVERGVEVVEGGGG 60
Query: 61 VGLAASLLHQPLHLGVQGPCALTQVVAVAPGTAQVVPVDARRLVQKVLLLFGAAAAQAAP 120
VGLAASLLHQPLHLGVQGPCALTQVVAVAPGTAQVVPVDARRLVQKVLLLFGAAAAQAAP
Sbjct: 61 VGLAASLLHQPLHLGVQGPCALTQVVAVAPGTAQVVPVDARRLVQKVLLLFGAAAAQAAP 120
Query: 121 DDAQQRLQQLQDQGILGLLGH 141
DDAQQRLQQLQDQGILGLLGH
Sbjct: 121 DDAQQRLQQLQDQGILGLLGH 141
>gi|239745680 PREDICTED: hypothetical protein XP_002343542 [Homo
sapiens]
Length = 141
Score = 276 bits (707), Expect = 3e-75
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MPGAAPGPGPAHLRARGHVAGVSASFLLLLCLMHAALSSVALQDPEQVERGVEVVEGGGG 60
MPGAAPGPGPAHLRARGHVAGVSASFLLLLCLMHAALSSVALQDPEQVERGVEVVEGGGG
Sbjct: 1 MPGAAPGPGPAHLRARGHVAGVSASFLLLLCLMHAALSSVALQDPEQVERGVEVVEGGGG 60
Query: 61 VGLAASLLHQPLHLGVQGPCALTQVVAVAPGTAQVVPVDARRLVQKVLLLFGAAAAQAAP 120
VGLAASLLHQPLHLGVQGPCALTQVVAVAPGTAQVVPVDARRLVQKVLLLFGAAAAQAAP
Sbjct: 61 VGLAASLLHQPLHLGVQGPCALTQVVAVAPGTAQVVPVDARRLVQKVLLLFGAAAAQAAP 120
Query: 121 DDAQQRLQQLQDQGILGLLGH 141
DDAQQRLQQLQDQGILGLLGH
Sbjct: 121 DDAQQRLQQLQDQGILGLLGH 141
>gi|19923084 polycystin-1L1 [Homo sapiens]
Length = 2849
Score = 31.2 bits (69), Expect = 0.30
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 18 HVAGVSASFLLLLCLMHAALSSVALQDPEQVERGVEVVEGGGGVGLAASLLHQPLHLGVQ 77
H ++ SF LL C+ + VA EQ V G VGL +LL P G Q
Sbjct: 1953 HTPRLTVSFSLL-CVYACLTALVAAGGQEQPHLDVSPTLGSFRVGLLCTLLASP---GAQ 2008
Query: 78 GPCALTQVVAVAPGTAQVVP 97
L ++ APG+A+V P
Sbjct: 2009 LLSLLFRLSKEAPGSARVEP 2028
>gi|4507229 aldehyde dehydrogenase 5A1 isoform 2 precursor [Homo
sapiens]
Length = 535
Score = 30.4 bits (67), Expect = 0.50
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 1 MPGAAPGPGPAHLRA-RGHVAGVSASFL 27
+P + P PGPA LR G +AG+SA+ L
Sbjct: 32 VPASGPAPGPAQLRCYAGRLAGLSAALL 59
>gi|25777721 aldehyde dehydrogenase 5A1 isoform 1 precursor [Homo
sapiens]
Length = 548
Score = 30.4 bits (67), Expect = 0.50
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 1 MPGAAPGPGPAHLRA-RGHVAGVSASFL 27
+P + P PGPA LR G +AG+SA+ L
Sbjct: 32 VPASGPAPGPAQLRCYAGRLAGLSAALL 59
>gi|239756691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 319
Score = 30.0 bits (66), Expect = 0.66
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 7 GPGPAHLRARGHVAGVSASFLLLLCLMHAALSSVALQDPEQVERGVEVVEGGGGVGLAAS 66
G G L G AG +A+ LL L+ + + LQ + +GGGG+ LA
Sbjct: 145 GDGLCQLLHLGQAAG-AATLLLTSRLLSWRILRLGLQGGRTT-----IFQGGGGLQLAGV 198
Query: 67 LLHQ----PLHL--GVQGPCALTQVVAVAPGTAQVVPVDA 100
LLHQ LH G P V + A++VPV A
Sbjct: 199 LLHQLQGGQLHKEEGRPSPVLHEGVHQLLAQAAELVPVGA 238
>gi|239751188 PREDICTED: hypothetical protein XP_002347742 [Homo
sapiens]
Length = 319
Score = 30.0 bits (66), Expect = 0.66
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 7 GPGPAHLRARGHVAGVSASFLLLLCLMHAALSSVALQDPEQVERGVEVVEGGGGVGLAAS 66
G G L G AG +A+ LL L+ + + LQ + +GGGG+ LA
Sbjct: 145 GDGLCQLLHLGQAAG-AATLLLTSRLLSWRILRLGLQGGRTT-----IFQGGGGLQLAGV 198
Query: 67 LLHQ----PLHL--GVQGPCALTQVVAVAPGTAQVVPVDA 100
LLHQ LH G P V + A++VPV A
Sbjct: 199 LLHQLQGGQLHKEEGRPSPVLHEGVHQLLAQAAELVPVGA 238
>gi|239745676 PREDICTED: hypothetical protein XP_002343540 [Homo
sapiens]
Length = 319
Score = 30.0 bits (66), Expect = 0.66
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 7 GPGPAHLRARGHVAGVSASFLLLLCLMHAALSSVALQDPEQVERGVEVVEGGGGVGLAAS 66
G G L G AG +A+ LL L+ + + LQ + +GGGG+ LA
Sbjct: 145 GDGLCQLLHLGQAAG-AATLLLTSRLLSWRILRLGLQGGRTT-----IFQGGGGLQLAGV 198
Query: 67 LLHQ----PLHL--GVQGPCALTQVVAVAPGTAQVVPVDA 100
LLHQ LH G P V + A++VPV A
Sbjct: 199 LLHQLQGGQLHKEEGRPSPVLHEGVHQLLAQAAELVPVGA 238
>gi|226530908 protein-L-isoaspartate (D-aspartate)
O-methyltransferase 1 [Homo sapiens]
Length = 285
Score = 30.0 bits (66), Expect = 0.66
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 32 LMHAALSSVALQDPEQVERG-VEVVEGGGGVGLAASLLHQPLHLGVQGPCALTQVV-AVA 89
L+ ++++V DP + G V++V G G +G A + +H+G P ++ +
Sbjct: 173 LVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLK 232
Query: 90 PGTAQVVPV 98
PG ++PV
Sbjct: 233 PGGRLILPV 241
>gi|15529984 armadillo repeat containing 6 [Homo sapiens]
Length = 476
Score = 30.0 bits (66), Expect = 0.66
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 35 AALSSVALQDPEQVERGVEVVEGGGGVGLAASLLHQPLHLGVQGPCALTQVVAVAPGTAQ 94
AAL +AL+ P+ +VEGGG V ++ P GVQ + VA G A
Sbjct: 367 AALCFLALRKPDNSRI---IVEGGGAVAALQAMKAHPQKAGVQKQACMLIRNLVAHGQAF 423
Query: 95 VVPVDARRLVQKVLLLFGAAAAQAAPDDAQQRLQQL 130
P+ L + L++ +A + D A+ L+ L
Sbjct: 424 SKPI--LDLGAEALIMQARSAHRDCEDVAKAALRDL 457
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 29.3 bits (64), Expect = 1.1
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 1 MPGAAPGPGPAHLRARGHVAGVS-ASFLLLLCLMHAALSSVALQDPEQVERGVEVV 55
MPG+APGPG RG +S S LL L S PE +ER V+ V
Sbjct: 3451 MPGSAPGPGEDRPPPRGSSPILSEGSLPALLHLCSEVAPSTTKGWPETLERPVDPV 3506
>gi|23308693 zinc finger and BTB domain containing 9 [Homo sapiens]
Length = 473
Score = 29.3 bits (64), Expect = 1.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 51 GVEVVEGGGGVGLAASLLHQPLHLGVQGP 79
G E++ GGGG G A +H P+ LG P
Sbjct: 350 GNEILSGGGGPGGAGQAVHGPVKLGGTPP 378
>gi|84993742 tripartite motif-containing 71 [Homo sapiens]
Length = 868
Score = 28.9 bits (63), Expect = 1.5
Identities = 32/97 (32%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 30 LCLMHAALSSVALQDPEQVERGVEVVEGGGGVGLAASLLH-QPLHLGVQGPCALTQVVAV 88
+C A LSS + + GGGG G AA LH P PC +
Sbjct: 18 MCGSPAPLSSNSSASSSSSQTSTSSGGGGGGPGAAARRLHVLPCLHAFCRPCLEAHRLPA 77
Query: 89 APGTAQVVPVDARRLV--QKVLLLFGAAAAQAAPDDA 123
A G A P+ R V QKV+L AA A P A
Sbjct: 78 AGGGAAGEPLKLRCPVCDQKVVLA-EAAGMDALPSSA 113
>gi|90193619 nuclear matrix transcription factor 4 isoform c [Homo
sapiens]
Length = 461
Score = 28.5 bits (62), Expect = 1.9
Identities = 20/61 (32%), Positives = 24/61 (39%)
Query: 73 HLGVQGPCALTQVVAVAPGTAQVVPVDARRLVQKVLLLFGAAAAQAAPDDAQQRLQQLQD 132
H+ P L Q V A A V A+ Q A AQA+ QQ+ QQ Q
Sbjct: 335 HMRKHNPPDLQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQ 394
Query: 133 Q 133
Q
Sbjct: 395 Q 395
>gi|90193617 nuclear matrix transcription factor 4 isoform b [Homo
sapiens]
Length = 500
Score = 28.5 bits (62), Expect = 1.9
Identities = 20/61 (32%), Positives = 24/61 (39%)
Query: 73 HLGVQGPCALTQVVAVAPGTAQVVPVDARRLVQKVLLLFGAAAAQAAPDDAQQRLQQLQD 132
H+ P L Q V A A V A+ Q A AQA+ QQ+ QQ Q
Sbjct: 374 HMRKHNPPDLQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQ 433
Query: 133 Q 133
Q
Sbjct: 434 Q 434
>gi|90193615 nuclear matrix transcription factor 4 isoform b [Homo
sapiens]
Length = 500
Score = 28.5 bits (62), Expect = 1.9
Identities = 20/61 (32%), Positives = 24/61 (39%)
Query: 73 HLGVQGPCALTQVVAVAPGTAQVVPVDARRLVQKVLLLFGAAAAQAAPDDAQQRLQQLQD 132
H+ P L Q V A A V A+ Q A AQA+ QQ+ QQ Q
Sbjct: 374 HMRKHNPPDLQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQ 433
Query: 133 Q 133
Q
Sbjct: 434 Q 434
>gi|90193613 nuclear matrix transcription factor 4 isoform a [Homo
sapiens]
Length = 516
Score = 28.5 bits (62), Expect = 1.9
Identities = 20/61 (32%), Positives = 24/61 (39%)
Query: 73 HLGVQGPCALTQVVAVAPGTAQVVPVDARRLVQKVLLLFGAAAAQAAPDDAQQRLQQLQD 132
H+ P L Q V A A V A+ Q A AQA+ QQ+ QQ Q
Sbjct: 390 HMRKHNPPDLQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQ 449
Query: 133 Q 133
Q
Sbjct: 450 Q 450
>gi|90193611 nuclear matrix transcription factor 4 isoform a [Homo
sapiens]
Length = 516
Score = 28.5 bits (62), Expect = 1.9
Identities = 20/61 (32%), Positives = 24/61 (39%)
Query: 73 HLGVQGPCALTQVVAVAPGTAQVVPVDARRLVQKVLLLFGAAAAQAAPDDAQQRLQQLQD 132
H+ P L Q V A A V A+ Q A AQA+ QQ+ QQ Q
Sbjct: 390 HMRKHNPPDLQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQ 449
Query: 133 Q 133
Q
Sbjct: 450 Q 450
>gi|36054194 nuclear matrix transcription factor 4 isoform a [Homo
sapiens]
Length = 516
Score = 28.5 bits (62), Expect = 1.9
Identities = 20/61 (32%), Positives = 24/61 (39%)
Query: 73 HLGVQGPCALTQVVAVAPGTAQVVPVDARRLVQKVLLLFGAAAAQAAPDDAQQRLQQLQD 132
H+ P L Q V A A V A+ Q A AQA+ QQ+ QQ Q
Sbjct: 390 HMRKHNPPDLQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQ 449
Query: 133 Q 133
Q
Sbjct: 450 Q 450
>gi|209180475 nuclear matrix transcription factor 4 isoform d [Homo
sapiens]
Length = 577
Score = 28.5 bits (62), Expect = 1.9
Identities = 20/61 (32%), Positives = 24/61 (39%)
Query: 73 HLGVQGPCALTQVVAVAPGTAQVVPVDARRLVQKVLLLFGAAAAQAAPDDAQQRLQQLQD 132
H+ P L Q V A A V A+ Q A AQA+ QQ+ QQ Q
Sbjct: 451 HMRKHNPPDLQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQ 510
Query: 133 Q 133
Q
Sbjct: 511 Q 511
>gi|4507431 thyrotrophic embryonic factor isoform 1 [Homo sapiens]
Length = 303
Score = 28.5 bits (62), Expect = 1.9
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 2 PGAAPGPGPAHLRARGHVAGVSASFLLLLCLMHAALSSVALQDPEQVERGVEVVEGGGGV 61
P A PGPGP RA G G+S SF L+L + A D E+ + +E E
Sbjct: 14 PQAGPGPGPG--RAAGE-RGLSGSFPLVLKKLMENPPREARLDKEKGKEKLEEDEAAAAS 70
Query: 62 GLAASLLHQP 71
+A S P
Sbjct: 71 TMAVSASLMP 80
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 28.5 bits (62), Expect = 1.9
Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 22/141 (15%)
Query: 1 MPGAAPGPGPAHLRARG------HVAGVSASFLLLLCLMHAALSSVALQDPEQVERGVEV 54
M G GPGP ++ A G V G+S + A + +Q G
Sbjct: 471 MTGGIQGPGPINIGAGGPPQGPRQVPGISG-----VGNPGAGMQGTGIQGTGMQGAG--- 522
Query: 55 VEGGG--GVGLAASLLHQP--LHLGVQGPCAL--TQVVAVAPGTAQVVPVDARR--LVQK 106
++GGG G G+ + G+QG +Q + +PG +QV P D + L+ +
Sbjct: 523 IQGGGMQGAGIQGVSIQGGGIQGGGIQGASKQGGSQPSSFSPGQSQVTPQDQEKAALIMQ 582
Query: 107 VLLLFGAAAAQAAPDDAQQRL 127
VL L A P+ Q L
Sbjct: 583 VLQLTADQIAMLPPEQRQSIL 603
>gi|156564407 phospholipase D2 [Homo sapiens]
Length = 933
Score = 28.1 bits (61), Expect = 2.5
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 22 VSASFLLLLCLMHAALSSVALQDPE-QVERGVEVVEGGGGVGLAAS 66
V SFLL +CL A+S V L DP +V+ G E GV + S
Sbjct: 240 VKDSFLLYMCLETGAISFVQLFDPGFEVQVGKRSTEARHGVRIDTS 285
>gi|46487911 zinc finger protein 406 isoform ZFAT-1 [Homo sapiens]
Length = 1243
Score = 28.1 bits (61), Expect = 2.5
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 64 AASLLHQPLHLGVQ--GPCALTQVVAVAPGTAQVV 96
A ++L Q + LG + AL VVA+APGT VV
Sbjct: 1128 AVNILQQIIELGAETHDATALASVVAMAPGTVTVV 1162
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 27.7 bits (60), Expect = 3.3
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 2 PGAAPGPGPAHLRARGHVAGVSASFLL-----LLCLMHAALSSVAL 42
PG PGPGP G AG A+ L LL HAA +V+L
Sbjct: 172 PGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSL 217
>gi|25914749 ATP-binding cassette, sub-family C, member 10 [Homo
sapiens]
Length = 1464
Score = 27.7 bits (60), Expect = 3.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 75 GVQGPCALTQVVAVAPGTAQVVPVDARRLVQKVLL 109
GV C L + V A GT Q RRL+ +VL+
Sbjct: 948 GVNSLCTLLRAVLFAAGTLQAAATLHRRLLHRVLM 982
>gi|157694487 CMT1A duplicated region transcript 1 [Homo sapiens]
Length = 752
Score = 27.7 bits (60), Expect = 3.3
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 59 GGVGLAASLLHQPLHLGVQGPCALTQVVAVAPGTAQVVPVDARRLVQKVLLLF 111
GG H LH+ P + V AV P T + P A V +L+LF
Sbjct: 697 GGNASLTECAHVRLHIAGHLPASRLPVAAVQPMTGGMAPTTAPTHVLAMLILF 749
>gi|29826279 tubby isoform b [Homo sapiens]
Length = 506
Score = 27.3 bits (59), Expect = 4.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 59 GGVGLAASLLHQPLHLGVQGPCALTQVVAVAPGTAQVVPV 98
GG G AA + H G GP AL + + A G Q++ V
Sbjct: 117 GGQGGAARKEKKGKHKGTSGPAALAEDKSEAQGPVQILTV 156
>gi|19923167 tubby isoform a [Homo sapiens]
Length = 561
Score = 27.3 bits (59), Expect = 4.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 59 GGVGLAASLLHQPLHLGVQGPCALTQVVAVAPGTAQVVPV 98
GG G AA + H G GP AL + + A G Q++ V
Sbjct: 172 GGQGGAARKEKKGKHKGTSGPAALAEDKSEAQGPVQILTV 211
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,022,564
Number of Sequences: 37866
Number of extensions: 251092
Number of successful extensions: 1150
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1119
Number of HSP's gapped (non-prelim): 56
length of query: 141
length of database: 18,247,518
effective HSP length: 92
effective length of query: 49
effective length of database: 14,763,846
effective search space: 723428454
effective search space used: 723428454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.