TUB 11617

Name: TUB	Sequence: fasta or formatted (561aa)		NCBI GI: 19923167
Description: tubby isoform a		Referenced in: Additional Genes in Development
Other entries for this name: alt prot [506aa] tubby isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.6 48 3 C cysteine 0.7 4 1 D aspartate 5.3 30 2 E glutamate 6.6 37 3 F phenylalanine 2.9 16 2 G glycine 7.8 44 3 H histidine 1.8 10 1 I isoleucine 3.0 17 2 K lysine 6.8 38 3 L leucine 7.0 39 2 M methionine 2.3 13 1 N asparagine 3.6 20 1 P proline 5.5 31 1 Q glutamine 6.1 34 2 R arginine 8.4 47 2 S serine 9.4 53 5 T threonine 5.9 33 2 V valine 5.2 29 1 W tryptophan 0.9 5 1 Y tyrosine 2.3 13 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tubby isoform a TUB 0.866 tubby isoform b TULP3 0.395 tubby like protein 3 isoform 1 TULP3 0.384 tubby like protein 3 isoform 2 TULP1 0.362 tubby like protein 1 TULP2 0.279 tubby like protein 2 TULP4 0.048 tubby like protein 4 isoform 1 NOLC1 0.023 nucleolar and coiled-body phosphoprotein 1 FLJ37078 0.022 hypothetical protein LOC222183 CDC2L1 0.022 cell division cycle 2-like 1 (PITSLRE proteins) isof... TCOF1 0.021 Treacher Collins-Franceschetti syndrome 1 isoform e... TCOF1 0.021 Treacher Collins-Franceschetti syndrome 1 isoform d... TCOF1 0.021 Treacher Collins-Franceschetti syndrome 1 isoform a ... TCOF1 0.021 Treacher Collins-Franceschetti syndrome 1 isoform c ... CDC2L2 0.021 cell division cycle 2-like 2 isoform 1 TCOF1 0.020 Treacher Collins-Franceschetti syndrome 1 isoform f... TCOF1 0.020 Treacher Collins-Franceschetti syndrome 1 isoform b ... CDC2L2 0.020 cell division cycle 2-like 2 isoform 4 LOC100288496 0.020 PREDICTED: hypothetical protein XP_002342747 CDC2L1 0.019 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.018 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.018 cell division cycle 2-like 1 (PITSLRE proteins) isof... SETD1A 0.018 SET domain containing 1A MARCKS 0.017 myristoylated alanine-rich protein kinase C substra... MLLT1 0.016 myeloid/lymphoid or mixed-lineage leukemia (trithora... MLLT3 0.016 myeloid/lymphoid or mixed-lineage leukemia (trithor... ZC3H18 0.016 zinc finger CCCH-type containing 18 CDC2L1 0.016 cell division cycle 2-like 1 (PITSLRE proteins) isof... SFRS12 0.016 splicing factor, arginine/serine-rich 12 isoform a ... SFRS12 0.016 splicing factor, arginine/serine-rich 12 isoform b [... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.