Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292419 Sequence: fasta or formatted (319aa) NCBI GI: 239756691
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         33           2
 C cysteine            1.9          6           1
 D aspartate           2.5          8           1
 E glutamate           6.3         20           2
 F phenylalanine       0.9          3           1
 G glycine            11.9         38           4
 H histidine           4.4         14           1
 I isoleucine          0.9          3           1
 K lysine              2.2          7           2
 L leucine            14.7         47           3
 M methionine          0.6          2           1
 N asparagine          1.3          4           1
 P proline             9.1         29           4
 Q glutamine           9.1         29           2
 R arginine            8.2         26           2
 S serine              3.8         12           1
 T threonine           3.4         11           2
 V valine              7.2         23           2
 W tryptophan          1.3          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288674          1.000   PREDICTED: hypothetical protein XP_002343540 
LOC100290297          0.997   PREDICTED: hypothetical protein XP_002347742 
LOC100292453          0.029   PREDICTED: hypothetical protein 
LOC100288612          0.029   PREDICTED: hypothetical protein 
LOC100288612          0.029   PREDICTED: hypothetical protein XP_002342081 
EN1                   0.024   engrailed homeobox 1 
GRIN2D                0.021   N-methyl-D-aspartate receptor subunit 2D precursor ...
SFPQ                  0.018   splicing factor proline/glutamine rich (polypyrimidin...
ZC3H3                 0.016   zinc finger CCCH-type containing 3 
PRB3                  0.016   proline-rich protein BstNI subfamily 3 precursor [H...
ADAMTS19              0.016   ADAM metallopeptidase with thrombospondin type 1 mo...
LOC401180             0.014   PREDICTED: similar to hCG1745223 
LOC401180             0.014   PREDICTED: similar to hCG1745223 
LOC401180             0.014   PREDICTED: similar to hCG1745223 
SPAST                 0.014   spastin isoform 2 
SPAST                 0.014   spastin isoform 1 
KIAA1949              0.014   phostensin 
KIAA1949              0.014   phostensin 
SLC4A2                0.013   solute carrier family 4, anion exchanger, member 2 ...
LOC730045             0.013   PREDICTED: hypothetical protein 
LOC100293668          0.013   PREDICTED: hypothetical protein 
LOC100290150          0.013   PREDICTED: hypothetical protein XP_002346609 
LOC730045             0.013   PREDICTED: hypothetical protein 
LOC100288275          0.013   PREDICTED: hypothetical protein XP_002342451 
SCAF1                 0.013   SR-related CTD-associated factor 1 
C11orf87              0.013   hypothetical protein LOC399947 
FOXJ3                 0.013   forkhead box J3 
LOC100288057          0.013   PREDICTED: hypothetical protein XP_002342282 
PITRM1                0.013   metalloprotease 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press