Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZNF384 Sequence: fasta or formatted (500aa) NCBI GI: 90193617
Description:

nuclear matrix transcription factor 4 isoform b

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [577aa] nuclear matrix transcription factor 4 isoform d
alt prot [516aa] nuclear matrix transcription factor 4 isoform a
alt prot [516aa] nuclear matrix transcription factor 4 isoform a
alt prot [516aa] nuclear matrix transcription factor 4 isoform a
alt mRNA [500aa] nuclear matrix transcription factor 4 isoform b
alt prot [461aa] nuclear matrix transcription factor 4 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         45           7
 C cysteine            3.0         15           1
 D aspartate           3.4         17           4
 E glutamate           3.6         18           2
 F phenylalanine       2.4         12           1
 G glycine             6.0         30           9
 H histidine           5.4         27           2
 I isoleucine          3.0         15           1
 K lysine              6.0         30           3
 L leucine             6.0         30           2
 M methionine          2.4         12           1
 N asparagine          2.8         14           1
 P proline             8.6         43           3
 Q glutamine          10.6         53          16
 R arginine            2.8         14           2
 S serine             10.4         52           2
 T threonine           7.4         37           2
 V valine              4.4         22           2
 W tryptophan          0.2          1           1
 Y tyrosine            2.6         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear matrix transcription factor 4 isoform b [Hom... 
ZNF384                1.000   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.989   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.989   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.989   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.952   nuclear matrix transcription factor 4 isoform d [Ho...
ZNF384                0.908   nuclear matrix transcription factor 4 isoform c [Hom...
ZNF362                0.355   zinc finger protein 362 
ZNF583                0.140   zinc finger protein 583 
ZNF583                0.140   zinc finger protein 583 
ZNF583                0.140   zinc finger protein 583 
ZNF83                 0.139   zinc finger protein 83 isoform b 
ZNF83                 0.139   zinc finger protein 83 isoform b 
ZNF852                0.139   PREDICTED: zinc finger protein 852 
ZNF852                0.139   PREDICTED: zinc finger protein 852 
ZNF852                0.139   PREDICTED: zinc finger protein 852 
ZNF468                0.138   zinc finger protein ZNF468 isoform 1 
ZNF468                0.138   zinc finger protein ZNF468 isoform 2 
ZNF226                0.138   zinc finger protein 226 isoform a 
ZNF226                0.138   zinc finger protein 226 isoform a 
ZNF83                 0.138   zinc finger protein 83 isoform a 
ZNF83                 0.138   zinc finger protein 83 isoform a 
ZNF83                 0.138   zinc finger protein 83 isoform a 
ZNF83                 0.138   zinc finger protein 83 isoform a 
ZNF83                 0.138   zinc finger protein 83 isoform a 
ZNF674                0.137   zinc finger family member 674 isoform 2 
ZNF674                0.137   zinc finger family member 674 isoform 1 
ZFP112                0.137   zinc finger protein 228 isoform 1 
ZFP112                0.137   zinc finger protein 228 isoform 2 
ZNF28                 0.137   zinc finger protein 28 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press